Wall clock time and date at job start Tue Mar 31 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47244 * 2 1 4 4 C 1.53002 * 109.46999 * 239.99624 * 2 1 3 5 5 O 1.45201 * 109.46545 * 120.00083 * 2 1 3 6 6 C 1.34630 * 117.00211 * 59.99915 * 5 2 1 7 7 O 1.21507 * 120.00191 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00058 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00190 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.91648 * 322.55086 * 9 8 6 11 11 C 1.55154 * 111.00473 * 198.64917 * 9 8 6 12 12 C 1.54322 * 102.94204 * 206.42028 * 11 9 8 13 13 N 1.47019 * 107.27223 * 22.19795 * 12 11 9 14 14 C 1.34777 * 125.65061 * 181.07843 * 13 12 11 15 15 O 1.21687 * 120.00082 * 179.97438 * 14 13 12 16 16 C 1.46377 * 120.00013 * 359.97158 * 14 13 12 17 17 H 1.08000 * 119.99375 * 359.97438 * 16 14 13 18 18 C 1.40045 * 119.99888 * 180.02562 * 16 14 13 19 19 N 1.30673 * 120.00457 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99645 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47195 * 59.99772 * 20 18 16 22 22 H 1.48508 * 109.46909 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46812 * 299.99715 * 20 18 16 24 24 C 1.47426 * 108.70209 * 1.05519 * 13 12 11 25 25 H 1.09002 * 109.47197 * 300.00286 * 1 2 3 26 26 H 1.09005 * 109.46828 * 59.99834 * 1 2 3 27 27 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47326 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47343 * 299.99850 * 3 2 1 30 30 H 1.09002 * 109.47257 * 59.99750 * 3 2 1 31 31 H 1.08995 * 109.47176 * 300.00707 * 4 2 1 32 32 H 1.08998 * 109.47037 * 60.00263 * 4 2 1 33 33 H 1.08995 * 109.47190 * 179.97438 * 4 2 1 34 34 H 0.97003 * 120.00036 * 359.97438 * 8 6 5 35 35 H 1.08999 * 110.71557 * 88.06123 * 11 9 8 36 36 H 1.08995 * 110.87338 * 324.85942 * 11 9 8 37 37 H 1.09001 * 109.88768 * 262.77536 * 12 11 9 38 38 H 1.09004 * 110.00812 * 141.67871 * 12 11 9 39 39 H 0.97002 * 120.00223 * 180.02562 * 19 18 16 40 40 H 1.08998 * 110.36718 * 94.71247 * 24 13 12 41 41 H 1.09005 * 110.36600 * 217.03808 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0678 -2.6657 2.4168 9 6 1.6746 -4.0672 2.5827 10 1 0.6515 -4.2271 2.2426 11 6 1.8486 -4.5229 4.0556 12 6 2.0692 -6.0445 3.9228 13 7 2.5479 -6.2985 2.5561 14 6 2.8372 -7.5083 2.0373 15 8 3.2273 -7.6001 0.8883 16 6 2.6822 -8.7118 2.8559 17 1 2.3364 -8.6302 3.8758 18 6 2.9834 -9.9688 2.3170 19 7 3.4023 -10.0675 1.0832 20 14 2.7850 -11.5048 3.3616 21 1 1.3700 -11.6296 3.7944 22 1 3.1665 -12.6982 2.5644 23 1 3.6613 -11.4073 4.5564 24 6 2.6584 -5.0108 1.8469 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7210 -1.2495 34 1 2.6280 -2.2370 3.0826 35 1 0.9484 -4.3127 4.6331 36 1 2.7168 -4.0455 4.5098 37 1 1.1299 -6.5714 4.0905 38 1 2.8150 -6.3776 4.6446 39 1 3.6106 -10.9382 0.7098 40 1 3.6759 -4.6261 1.9154 41 1 2.3648 -5.1259 0.8035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274740898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:13 Heat of formation + Delta-G solvation = -118.942739 kcal Electronic energy + Delta-G solvation = -22915.913878 eV Core-core repulsion = 19409.944351 eV Total energy + Delta-G solvation = -3505.969527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76752 -38.78542 -37.14307 -35.78169 -34.35741 -33.42908 -32.48446 -29.72710 -28.25771 -27.56619 -27.47263 -26.02688 -23.29828 -22.07506 -20.74452 -20.03208 -19.15698 -18.21500 -16.87319 -16.56749 -16.11047 -15.73660 -15.51363 -14.57604 -14.52333 -14.38212 -13.89891 -13.61147 -13.30678 -13.15408 -12.91490 -12.65655 -12.37559 -12.03167 -12.00047 -11.94265 -11.78616 -11.49195 -11.38651 -11.25898 -11.12900 -11.12504 -10.83451 -10.54679 -10.42426 -10.37202 -10.20392 -10.00959 -9.10266 -8.85420 -7.65742 -7.22767 -6.20436 -4.65879 2.15488 2.90599 3.15497 3.20199 3.22211 4.00943 4.14347 4.54283 4.58449 4.61599 4.62463 4.76495 4.78571 5.08555 5.20074 5.29759 5.38880 5.45478 5.53336 5.60609 5.64533 5.73293 5.74630 5.76209 5.82709 5.90966 6.10595 6.20302 6.31088 6.35220 6.43761 6.51293 6.59539 6.61769 7.34014 7.42656 7.47842 8.07533 8.38025 8.44995 9.00548 9.46450 10.56668 10.75332 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036734 B = 0.003329 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.044138 B = 8408.966445 C = 8859.498212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.368 6.368 6 C 0.649 3.351 7 O -0.562 6.562 8 N -0.699 5.699 9 C 0.147 3.853 10 H 0.103 0.897 11 C -0.137 4.137 12 C 0.123 3.877 13 N -0.644 5.644 14 C 0.571 3.429 15 O -0.573 6.573 16 C -0.538 4.538 17 H 0.070 0.930 18 C 0.086 3.914 19 N -0.767 5.767 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.268 1.268 24 C 0.106 3.894 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.404 0.596 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.270 0.730 40 H 0.047 0.953 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 19.755 4.037 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.243 4.243 5 O -0.283 6.283 6 C 0.402 3.598 7 O -0.450 6.450 8 N -0.358 5.358 9 C 0.043 3.957 10 H 0.121 0.879 11 C -0.175 4.175 12 C -0.002 4.002 13 N -0.385 5.385 14 C 0.378 3.622 15 O -0.455 6.455 16 C -0.575 4.575 17 H 0.088 0.912 18 C -0.134 4.134 19 N -0.396 5.396 20 Si 0.734 3.266 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.193 1.193 24 C -0.019 4.019 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.950 19.278 2.715 19.865 hybrid contribution 0.166 -0.469 0.842 0.978 sum -3.784 18.809 3.557 19.512 Atomic orbital electron populations 1.22520 0.94072 1.05214 1.02253 1.22039 0.94311 0.91396 0.82295 1.21852 1.02252 0.92648 1.02936 1.22529 1.01669 1.03787 0.96266 1.86277 1.71725 1.23888 1.46417 1.18099 0.79023 0.80316 0.82380 1.90931 1.41016 1.70299 1.42776 1.44673 1.55386 1.12129 1.23565 1.22218 1.00058 0.77158 0.96276 0.87895 1.22944 1.02481 0.97199 0.94903 1.21554 0.99387 0.92238 0.87003 1.48685 1.72800 1.05324 1.11735 1.18065 0.77200 0.80131 0.86828 1.90622 1.51051 1.84684 1.19178 1.20838 1.47755 0.89603 0.99298 0.91212 1.25742 0.92827 1.00070 0.94740 1.70012 1.31436 1.24987 1.13159 0.86402 0.79412 0.80506 0.80254 1.19212 1.20533 1.19251 1.22125 0.96875 0.85147 0.97781 0.92308 0.91252 0.89222 0.91489 0.90236 0.91601 0.89086 0.91256 0.92112 0.76081 0.90068 0.90509 0.92291 0.92281 0.91950 0.93488 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 2 C 0.14 1.49 1.13 -90.62 -0.10 1.39 16 3 C -0.14 -1.09 8.85 37.15 0.33 -0.76 16 4 C -0.19 -2.14 8.37 37.16 0.31 -1.83 16 5 O -0.37 -4.74 9.94 -40.30 -0.40 -5.14 16 6 C 0.65 9.61 8.05 54.06 0.44 10.04 16 7 O -0.56 -9.90 11.63 -19.28 -0.22 -10.12 16 8 N -0.70 -9.12 5.23 -56.63 -0.30 -9.41 16 9 C 0.15 2.24 3.31 -65.78 -0.22 2.02 16 10 H 0.10 1.71 7.73 -51.93 -0.40 1.30 16 11 C -0.14 -1.74 6.57 -24.90 -0.16 -1.91 16 12 C 0.12 2.16 6.05 -3.07 -0.02 2.14 16 13 N -0.64 -14.93 3.33 -172.18 -0.57 -15.50 16 14 C 0.57 16.70 7.78 -12.99 -0.10 16.60 16 15 O -0.57 -19.22 15.27 5.20 0.08 -19.14 16 16 C -0.54 -15.26 9.06 -35.63 -0.32 -15.58 16 17 H 0.07 1.79 7.16 -52.49 -0.38 1.42 16 18 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 19 N -0.77 -23.25 11.83 55.55 0.66 -22.59 16 20 Si 0.91 20.12 29.56 -169.99 -5.02 15.10 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C 0.11 2.15 6.60 -2.53 -0.02 2.13 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.19 5.88 -51.93 -0.31 0.89 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 4.10 8.63 -40.82 -0.35 3.75 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.67 8.04 -51.93 -0.42 1.25 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -36.17 336.94 -6.71 -42.88 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.36 Total: 3.92 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 0.35 Total: 14.94 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.21 Total: -47.50 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.55 Total: -34.41 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.17 -6.71 -42.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274740898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.060 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds