Wall clock time and date at job start Tue Mar 31 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47244 * 2 1 4 4 C 1.53002 * 109.46999 * 239.99624 * 2 1 3 5 5 O 1.45201 * 109.46545 * 120.00083 * 2 1 3 6 6 C 1.34630 * 117.00211 * 59.99915 * 5 2 1 7 7 O 1.21507 * 120.00191 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00058 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00190 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.91648 * 322.55086 * 9 8 6 11 11 C 1.55154 * 111.00473 * 198.64917 * 9 8 6 12 12 C 1.54322 * 102.94204 * 206.42028 * 11 9 8 13 13 N 1.47019 * 107.27223 * 22.19795 * 12 11 9 14 14 C 1.34777 * 125.65061 * 181.07843 * 13 12 11 15 15 O 1.21687 * 120.00082 * 179.97438 * 14 13 12 16 16 C 1.46377 * 120.00013 * 359.97158 * 14 13 12 17 17 H 1.08000 * 119.99375 * 359.97438 * 16 14 13 18 18 C 1.40045 * 119.99888 * 180.02562 * 16 14 13 19 19 N 1.30673 * 120.00457 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99645 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47195 * 59.99772 * 20 18 16 22 22 H 1.48508 * 109.46909 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46812 * 299.99715 * 20 18 16 24 24 C 1.47426 * 108.70209 * 1.05519 * 13 12 11 25 25 H 1.09002 * 109.47197 * 300.00286 * 1 2 3 26 26 H 1.09005 * 109.46828 * 59.99834 * 1 2 3 27 27 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47326 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47343 * 299.99850 * 3 2 1 30 30 H 1.09002 * 109.47257 * 59.99750 * 3 2 1 31 31 H 1.08995 * 109.47176 * 300.00707 * 4 2 1 32 32 H 1.08998 * 109.47037 * 60.00263 * 4 2 1 33 33 H 1.08995 * 109.47190 * 179.97438 * 4 2 1 34 34 H 0.97003 * 120.00036 * 359.97438 * 8 6 5 35 35 H 1.08999 * 110.71557 * 88.06123 * 11 9 8 36 36 H 1.08995 * 110.87338 * 324.85942 * 11 9 8 37 37 H 1.09001 * 109.88768 * 262.77536 * 12 11 9 38 38 H 1.09004 * 110.00812 * 141.67871 * 12 11 9 39 39 H 0.97002 * 120.00223 * 180.02562 * 19 18 16 40 40 H 1.08998 * 110.36718 * 94.71247 * 24 13 12 41 41 H 1.09005 * 110.36600 * 217.03808 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0678 -2.6657 2.4168 9 6 1.6746 -4.0672 2.5827 10 1 0.6515 -4.2271 2.2426 11 6 1.8486 -4.5229 4.0556 12 6 2.0692 -6.0445 3.9228 13 7 2.5479 -6.2985 2.5561 14 6 2.8372 -7.5083 2.0373 15 8 3.2273 -7.6001 0.8883 16 6 2.6822 -8.7118 2.8559 17 1 2.3364 -8.6302 3.8758 18 6 2.9834 -9.9688 2.3170 19 7 3.4023 -10.0675 1.0832 20 14 2.7850 -11.5048 3.3616 21 1 1.3700 -11.6296 3.7944 22 1 3.1665 -12.6982 2.5644 23 1 3.6613 -11.4073 4.5564 24 6 2.6584 -5.0108 1.8469 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7210 -1.2495 34 1 2.6280 -2.2370 3.0826 35 1 0.9484 -4.3127 4.6331 36 1 2.7168 -4.0455 4.5098 37 1 1.1299 -6.5714 4.0905 38 1 2.8150 -6.3776 4.6446 39 1 3.6106 -10.9382 0.7098 40 1 3.6759 -4.6261 1.9154 41 1 2.3648 -5.1259 0.8035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274740898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:12 Heat of formation + Delta-G solvation = -146.891670 kcal Electronic energy + Delta-G solvation = -22917.125834 eV Core-core repulsion = 19409.944351 eV Total energy + Delta-G solvation = -3507.181483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88705 -40.33135 -38.59073 -37.47922 -35.55564 -34.72220 -34.55891 -31.30208 -29.86492 -28.36769 -28.27826 -28.00718 -24.81605 -23.37067 -22.06905 -21.13867 -21.01813 -19.36654 -18.57632 -17.86789 -17.62866 -17.21399 -16.90875 -16.21421 -15.66894 -15.65135 -15.34395 -15.11650 -14.74298 -14.41293 -14.36780 -13.78093 -13.52237 -13.33093 -13.14671 -13.07662 -12.90873 -12.85311 -12.79344 -12.70468 -12.61105 -12.39877 -12.37860 -12.22920 -12.05123 -11.79513 -11.39360 -11.14266 -10.93582 -10.37141 -9.91945 -9.15326 -8.31804 -6.88422 1.07170 1.39868 1.43987 1.56122 1.72446 2.22949 2.42293 2.75750 3.20577 3.48864 3.55076 3.72164 3.76232 3.80718 3.95481 4.03894 4.29045 4.42199 4.52217 4.61413 4.68998 4.70820 4.76893 4.83176 4.86254 4.89490 4.93720 4.96699 5.10739 5.19579 5.28735 5.29481 5.31000 5.37923 5.56034 5.62076 5.99968 6.34495 6.39759 6.83551 7.33722 7.43282 8.41558 8.64350 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036734 B = 0.003329 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.044138 B = 8408.966445 C = 8859.498212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.184 4.184 5 O -0.363 6.363 6 C 0.645 3.355 7 O -0.595 6.595 8 N -0.684 5.684 9 C 0.165 3.835 10 H 0.089 0.911 11 C -0.112 4.112 12 C 0.112 3.888 13 N -0.652 5.652 14 C 0.548 3.452 15 O -0.637 6.637 16 C -0.561 4.561 17 H 0.094 0.906 18 C 0.024 3.976 19 N -0.825 5.825 20 Si 1.003 2.997 21 H -0.252 1.252 22 H -0.276 1.276 23 H -0.250 1.250 24 C 0.104 3.896 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.423 0.577 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.275 0.725 40 H 0.049 0.951 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 21.304 7.099 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.398 3.602 7 O -0.485 6.485 8 N -0.344 5.344 9 C 0.060 3.940 10 H 0.107 0.893 11 C -0.149 4.149 12 C -0.011 4.011 13 N -0.391 5.391 14 C 0.356 3.644 15 O -0.524 6.524 16 C -0.597 4.597 17 H 0.112 0.888 18 C -0.191 4.191 19 N -0.454 5.454 20 Si 0.821 3.179 21 H -0.176 1.176 22 H -0.201 1.201 23 H -0.174 1.174 24 C -0.021 4.021 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.261 0.739 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.541 20.921 5.850 22.193 hybrid contribution 0.355 -0.845 -0.194 0.937 sum -4.186 20.076 5.657 21.274 Atomic orbital electron populations 1.22470 0.93790 1.03520 1.03865 1.22437 0.94776 0.92823 0.81147 1.21873 1.02400 0.90128 1.04577 1.22504 1.01565 1.02020 0.98046 1.86298 1.71517 1.22633 1.47353 1.18324 0.78677 0.80945 0.82208 1.90939 1.42473 1.71142 1.43988 1.44435 1.55341 1.11018 1.23601 1.21842 0.97500 0.77251 0.97428 0.89281 1.22915 1.05855 0.93166 0.93008 1.21914 0.99450 0.96044 0.83717 1.48452 1.71538 1.04678 1.14396 1.18552 0.77059 0.82427 0.86410 1.90560 1.53818 1.86354 1.21676 1.21371 1.47987 0.90021 1.00324 0.88785 1.27115 0.91450 1.04417 0.96083 1.70211 1.32825 1.26414 1.15976 0.85003 0.80289 0.74467 0.78111 1.17571 1.20078 1.17378 1.22201 0.98487 0.85536 0.95901 0.91240 0.89094 0.92476 0.91284 0.87952 0.90590 0.92834 0.88904 0.92193 0.73890 0.86070 0.87348 0.92049 0.91385 0.91517 0.93253 0.95798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 2 C 0.12 2.58 1.13 -10.79 -0.01 2.56 16 3 C -0.13 -1.71 8.85 71.98 0.64 -1.07 16 4 C -0.18 -4.27 8.37 71.98 0.60 -3.66 16 5 O -0.36 -8.99 9.94 -55.40 -0.55 -9.54 16 6 C 0.64 19.05 8.05 129.79 1.05 20.10 16 7 O -0.59 -21.92 11.63 19.82 0.23 -21.69 16 8 N -0.68 -16.91 5.23 -563.50 -2.95 -19.86 16 9 C 0.17 4.91 3.31 46.38 0.15 5.06 16 10 H 0.09 2.96 7.73 -2.39 -0.02 2.94 16 11 C -0.11 -2.44 6.57 31.78 0.21 -2.23 16 12 C 0.11 3.73 6.05 86.73 0.52 4.25 16 13 N -0.65 -31.04 3.33 -816.86 -2.72 -33.76 16 14 C 0.55 33.56 7.78 86.36 0.67 34.23 16 15 O -0.64 -45.61 15.27 -4.31 -0.07 -45.68 16 16 C -0.56 -32.32 9.06 24.83 0.23 -32.10 16 17 H 0.09 4.76 7.16 -2.91 -0.02 4.74 16 18 C 0.02 1.37 5.50 85.30 0.47 1.84 16 19 N -0.82 -52.00 11.83 21.83 0.26 -51.75 16 20 Si 1.00 41.11 29.56 68.60 2.03 43.13 16 21 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 22 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 23 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 24 C 0.10 4.41 6.60 86.86 0.57 4.98 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.67 5.88 -2.39 -0.01 1.65 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.42 7.35 8.63 -92.71 -0.80 6.55 16 35 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.11 1.78 8.00 -2.39 -0.02 1.76 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.27 15.69 8.29 -92.71 -0.77 14.92 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.02 1.21 8.04 -2.38 -0.02 1.19 16 Total: -1.00 -86.96 336.94 2.17 -84.79 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.23 Total: 23.37 kcal Atomic # 6 Polarization: 25.27 SS G_CDS: 5.70 Total: 30.97 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -5.41 Total: -105.37 kcal Atomic # 8 Polarization: -76.52 SS G_CDS: -0.39 Total: -76.90 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -86.96 2.17 -84.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274740898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.099 kcal (2) G-P(sol) polarization free energy of solvation -86.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds