Wall clock time and date at job start Tue Mar 31 2020 06:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00216 * 2 1 4 4 H 1.48491 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47223 * 300.00855 * 3 2 1 6 6 H 1.48499 * 109.46651 * 60.00152 * 3 2 1 7 7 C 1.37874 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00034 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47125 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47283 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47286 * 180.02562 * 11 10 9 13 13 C 1.46904 * 111.00031 * 179.97438 * 12 11 10 14 14 H 1.09008 * 110.84893 * 31.23284 * 13 12 11 15 15 C 1.54391 * 110.99414 * 267.43981 * 13 12 11 16 16 C 1.51673 * 105.02291 * 216.13314 * 15 13 12 17 17 N 1.37519 * 140.30517 * 196.72988 * 16 15 13 18 18 H 0.96996 * 124.97128 * 0.02562 * 17 16 15 19 19 C 1.37508 * 110.05112 * 179.97438 * 17 16 15 20 20 C 1.39175 * 133.56144 * 180.12408 * 19 17 16 21 21 C 1.37741 * 119.75828 * 180.36476 * 20 19 17 22 22 C 1.38835 * 120.69151 * 359.97438 * 21 20 19 23 23 C 1.36642 * 120.50893 * 359.97438 * 22 21 20 24 24 C 1.39614 * 119.72457 * 0.02562 * 23 22 21 25 25 C 1.34075 * 110.15170 * 17.01812 * 16 15 13 26 26 C 1.51303 * 110.64799 * 359.93021 * 25 16 15 27 27 H 0.96996 * 119.99752 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47148 * 60.00128 * 9 7 2 29 29 H 1.08993 * 109.47157 * 300.00323 * 9 7 2 30 30 H 1.08996 * 109.46902 * 60.00244 * 10 9 7 31 31 H 1.09003 * 109.47416 * 300.00053 * 10 9 7 32 32 H 1.09005 * 109.47085 * 60.00042 * 11 10 9 33 33 H 1.09003 * 109.46921 * 300.00335 * 11 10 9 34 34 H 1.00899 * 111.00542 * 56.04654 * 12 11 10 35 35 H 1.08996 * 110.33180 * 335.02481 * 15 13 12 36 36 H 1.09001 * 110.33081 * 97.14561 * 15 13 12 37 37 H 1.07999 * 120.11862 * 0.38218 * 20 19 17 38 38 H 1.07999 * 119.65374 * 179.97438 * 21 20 19 39 39 H 1.07992 * 119.74566 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.13970 * 180.02562 * 23 22 21 41 41 H 1.09003 * 110.34864 * 101.96374 * 26 25 16 42 42 H 1.08994 * 110.35459 * 224.24781 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4349 -6.1036 -0.0006 13 6 1.7346 -7.3950 -0.0005 14 1 0.7841 -7.3209 -0.5291 15 6 1.5269 -7.9116 1.4395 16 6 1.6896 -9.4166 1.3445 17 7 1.4139 -10.5580 2.0604 18 1 0.9768 -10.5793 2.9260 19 6 1.8477 -11.6645 1.3688 20 6 1.8171 -13.0313 1.6295 21 6 2.3544 -13.9133 0.7181 22 6 2.9269 -13.4536 -0.4602 23 6 2.9667 -12.1160 -0.7364 24 6 2.4277 -11.2049 0.1738 25 6 2.3023 -9.7435 0.1977 26 6 2.6204 -8.5039 -0.6095 27 1 -0.4849 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8719 -3.6043 0.8894 31 1 2.8720 -3.6044 -0.8905 32 1 0.8539 -5.0446 -0.8914 33 1 0.8533 -5.0451 0.8886 34 1 3.0692 -6.0367 0.7812 35 1 2.2802 -7.4905 2.1052 36 1 0.5270 -7.6587 1.7920 37 1 1.3733 -13.3990 2.5429 38 1 2.3300 -14.9735 0.9223 39 1 3.3434 -14.1587 -1.1642 40 1 3.4132 -11.7650 -1.6551 41 1 3.6745 -8.2456 -0.5080 42 1 2.3665 -8.6588 -1.6581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281958801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:32 Heat of formation + Delta-G solvation = 32.446498 kcal Electronic energy + Delta-G solvation = -20644.657598 eV Core-core repulsion = 17588.394815 eV Total energy + Delta-G solvation = -3056.262783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.50103 -39.26716 -37.59538 -36.15307 -34.68489 -32.79966 -31.70935 -30.60308 -28.58088 -28.25866 -26.95592 -24.34628 -23.41770 -22.56232 -21.99985 -21.27869 -20.11288 -18.52579 -18.40009 -17.44390 -16.85768 -16.53772 -16.41789 -15.98983 -15.49651 -15.18981 -14.93762 -14.70855 -14.48804 -14.02196 -13.98056 -13.71751 -13.35343 -13.27989 -12.90219 -12.79488 -12.63824 -12.43929 -12.38631 -12.28665 -12.12866 -12.09643 -11.76120 -11.50574 -11.34496 -11.04942 -10.54332 -10.43236 -9.37018 -9.09632 -8.50032 -8.19145 -6.29545 0.18529 0.69776 1.40630 1.41232 1.54641 1.65751 1.89646 2.41894 2.97904 3.08014 3.14139 3.51087 3.71436 3.87635 3.98545 4.12085 4.25178 4.27677 4.34761 4.41586 4.46950 4.58533 4.66313 4.71927 4.76119 4.76864 4.88801 4.98353 5.00614 5.08586 5.14373 5.21700 5.24905 5.28710 5.55299 5.58663 5.70876 5.78747 5.81384 5.85616 5.88824 6.08714 6.24779 6.29363 6.49064 6.65464 6.88130 7.39607 8.92852 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.056857 B = 0.002232 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.341395 B =12543.187944 C =12798.017724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.094 4.094 11 C 0.072 3.928 12 N -0.676 5.676 13 C 0.098 3.902 14 H 0.090 0.910 15 C -0.069 4.069 16 C 0.044 3.956 17 N -0.577 5.577 18 H 0.422 0.578 19 C 0.088 3.912 20 C -0.138 4.138 21 C -0.101 4.101 22 C -0.151 4.151 23 C -0.089 4.089 24 C -0.115 4.115 25 C -0.207 4.207 26 C -0.032 4.032 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.008 1.008 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.030 0.970 34 H 0.349 0.651 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.230 -28.337 3.694 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.057 4.057 12 N -0.307 5.307 13 C -0.013 4.013 14 H 0.108 0.892 15 C -0.109 4.109 16 C -0.065 4.065 17 N -0.180 5.180 18 H 0.261 0.739 19 C -0.019 4.019 20 C -0.158 4.158 21 C -0.120 4.120 22 C -0.170 4.170 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.215 4.215 26 C -0.070 4.070 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.168 0.832 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.121 -28.163 3.125 28.634 hybrid contribution -0.535 1.052 1.344 1.789 sum 3.586 -27.111 4.469 27.710 Atomic orbital electron populations 1.70103 1.07747 1.27640 1.51948 1.25995 0.95807 1.03395 0.94880 0.85399 0.79104 0.78809 0.77740 1.18596 1.20453 1.20370 1.21749 0.93571 0.92459 1.50089 0.92237 1.18983 0.94473 0.93089 0.94825 1.21385 0.98030 0.92926 1.00853 1.21886 0.93942 0.89827 1.00049 1.60475 1.19309 1.00498 1.50374 1.22214 0.97142 0.88559 0.93355 0.89219 1.21651 1.03681 0.85886 0.99642 1.21196 1.01648 0.90361 0.93321 1.41161 1.53852 1.02718 1.20274 0.73933 1.18409 1.01239 0.89228 0.93036 1.20362 1.04965 0.88286 1.02222 1.21197 0.97145 1.00359 0.93314 1.20977 1.02270 0.95052 0.98707 1.20577 0.98628 0.93029 0.98518 1.18985 1.04772 0.91777 0.96465 1.21349 1.08512 0.92409 0.99189 1.20426 1.00134 0.88192 0.98272 0.92827 0.99030 0.98923 0.92921 0.92919 0.91841 0.95183 0.83151 0.88826 0.89904 0.84045 0.82889 0.83777 0.85483 0.90310 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.79 5.41 30.59 0.17 -3.62 16 11 C 0.07 2.32 5.55 86.30 0.48 2.80 16 12 N -0.68 -17.78 6.36 -486.60 -3.10 -20.88 16 13 C 0.10 2.26 3.45 45.88 0.16 2.42 16 14 H 0.09 2.14 7.83 -2.38 -0.02 2.12 16 15 C -0.07 -1.38 6.48 30.63 0.20 -1.18 16 16 C 0.04 0.97 7.98 41.03 0.33 1.30 16 17 N -0.58 -11.24 6.08 -174.77 -1.06 -12.30 16 18 H 0.42 5.69 8.96 -92.71 -0.83 4.86 16 19 C 0.09 1.89 7.28 39.04 0.28 2.17 16 20 C -0.14 -2.27 10.08 22.38 0.23 -2.05 16 21 C -0.10 -1.46 10.01 22.30 0.22 -1.24 16 22 C -0.15 -2.43 9.98 22.04 0.22 -2.21 16 23 C -0.09 -1.84 10.05 22.23 0.22 -1.62 16 24 C -0.12 -2.81 6.37 -20.17 -0.13 -2.94 16 25 C -0.21 -5.12 7.14 -18.41 -0.13 -5.25 16 26 C -0.03 -0.74 6.52 30.53 0.20 -0.54 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.14 8.09 -2.38 -0.02 2.12 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.35 8.34 8.08 -89.69 -0.72 7.61 16 35 H 0.09 1.73 7.56 -2.39 -0.02 1.72 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.08 1.83 8.08 -2.39 -0.02 1.81 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -68.19 346.30 0.91 -67.28 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -0.53 Total: 17.15 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 3.29 Total: -41.01 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -3.87 Total: -89.98 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.19 0.91 -67.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281958801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.731 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds