Wall clock time and date at job start Tue Mar 31 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47371 * 2 1 4 4 C 1.34774 * 120.00230 * 180.02562 * 3 2 1 5 5 O 1.21504 * 120.00167 * 359.97438 * 4 3 2 6 6 O 1.34644 * 120.00011 * 179.97438 * 4 3 2 7 7 C 1.45192 * 116.99907 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47137 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.58196 * 51.89159 * 8 7 6 10 10 C 1.53197 * 109.58663 * 172.31962 * 8 7 6 11 11 C 1.53040 * 109.31212 * 174.42711 * 10 8 7 12 12 C 1.53043 * 109.53634 * 298.63284 * 11 10 8 13 13 C 1.53200 * 109.31290 * 61.36628 * 12 11 10 14 14 N 1.46922 * 109.58753 * 291.60964 * 8 7 6 15 15 C 1.34777 * 120.63172 * 6.62294 * 14 8 7 16 16 O 1.21683 * 119.99816 * 353.87827 * 15 14 8 17 17 C 1.46371 * 120.00033 * 173.87155 * 15 14 8 18 18 H 1.08002 * 120.00443 * 351.27696 * 17 15 14 19 19 C 1.40046 * 120.00206 * 171.27050 * 17 15 14 20 20 N 1.30679 * 119.99904 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00600 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47227 * 59.99697 * 21 19 17 23 23 H 1.48495 * 109.47630 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46540 * 300.00049 * 21 19 17 25 25 H 1.09001 * 109.46939 * 300.00529 * 1 2 3 26 26 H 1.09003 * 109.46758 * 60.00278 * 1 2 3 27 27 H 1.08994 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47513 * 239.99966 * 2 1 3 29 29 H 1.09001 * 109.47334 * 119.99233 * 2 1 3 30 30 H 0.97012 * 119.99780 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47377 * 60.00001 * 7 6 4 32 32 H 1.09005 * 109.47516 * 300.00004 * 7 6 4 33 33 H 1.08999 * 109.49457 * 294.37227 * 10 8 7 34 34 H 1.08994 * 109.49909 * 54.44287 * 10 8 7 35 35 H 1.08996 * 109.46331 * 58.65096 * 11 10 8 36 36 H 1.08992 * 109.46328 * 178.62961 * 11 10 8 37 37 H 1.09000 * 109.49609 * 301.41653 * 12 11 10 38 38 H 1.09000 * 109.49808 * 181.31624 * 12 11 10 39 39 H 1.08997 * 109.58432 * 185.57876 * 13 12 11 40 40 H 1.09000 * 109.58304 * 65.15129 * 13 12 11 41 41 H 0.97000 * 120.00136 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1330 0.7040 -0.0005 6 8 3.7923 2.8969 -0.0010 7 6 5.2317 3.0871 -0.0010 8 6 5.5483 4.5840 -0.0023 9 1 5.0037 5.0733 0.8053 10 6 7.0540 4.7906 0.1906 11 6 7.3828 6.2786 0.0497 12 6 7.0060 6.7552 -1.3550 13 6 5.4997 6.5709 -1.5654 14 7 5.1517 5.1702 -1.2898 15 6 4.4809 4.4373 -2.2005 16 8 4.2956 3.2501 -2.0089 17 6 3.9754 5.0696 -3.4200 18 1 4.0137 6.1436 -3.5273 19 6 3.4420 4.2819 -4.4478 20 7 3.3952 2.9824 -4.3178 21 14 2.7974 5.0885 -6.0044 22 1 3.8950 5.8418 -6.6625 23 1 2.2893 4.0440 -6.9294 24 1 1.6949 6.0214 -5.6583 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.3880 2.1186 -0.0004 31 1 5.6593 2.6249 -0.8908 32 1 5.6592 2.6257 0.8892 33 1 7.3441 4.4464 1.1833 34 1 7.5987 4.2240 -0.5646 35 1 6.8189 6.8468 0.7894 36 1 8.4499 6.4315 0.2106 37 1 7.5511 6.1705 -2.0960 38 1 7.2620 7.8092 -1.4624 39 1 5.2422 6.8154 -2.5959 40 1 4.9532 7.2239 -0.8851 41 1 3.0261 2.4368 -5.0298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286105044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:22 Heat of formation + Delta-G solvation = -108.226347 kcal Electronic energy + Delta-G solvation = -24127.201166 eV Core-core repulsion = 20621.696337 eV Total energy + Delta-G solvation = -3505.504829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.59049 -38.64572 -35.96987 -35.65033 -34.39555 -32.61606 -31.72019 -31.36879 -30.01610 -26.72884 -25.75496 -23.74703 -22.77449 -21.60763 -20.64219 -20.16642 -18.87528 -17.75100 -16.44223 -16.05664 -15.82966 -15.33361 -14.84486 -14.50486 -14.39341 -14.09530 -13.84519 -13.73547 -13.15717 -12.88027 -12.63718 -12.36984 -11.98329 -11.84116 -11.62011 -11.61334 -11.38474 -11.19962 -11.14565 -10.98783 -10.58666 -10.54951 -10.47522 -10.24434 -10.16348 -9.76034 -9.58828 -9.38448 -8.80430 -8.53372 -7.22580 -7.09923 -6.12969 -4.60346 3.08125 3.14713 3.20296 3.21159 3.93059 4.07999 4.49518 4.57611 4.88588 5.18742 5.21076 5.26753 5.28737 5.37959 5.52740 5.71460 5.77543 5.79689 5.87438 5.95869 5.96901 6.07178 6.14448 6.14908 6.23129 6.24165 6.29241 6.43681 6.48598 6.58164 6.73927 6.93331 7.00949 7.43693 7.47024 7.63178 8.15011 8.22899 8.37245 9.05008 9.32557 9.46587 10.60657 10.79864 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.008068 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.396006 B = 3469.826767 C = 5601.523080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 N -0.718 5.718 4 C 0.668 3.332 5 O -0.594 6.594 6 O -0.334 6.334 7 C 0.114 3.886 8 C 0.154 3.846 9 H 0.055 0.945 10 C -0.125 4.125 11 C -0.111 4.111 12 C -0.137 4.137 13 C 0.124 3.876 14 N -0.638 5.638 15 C 0.560 3.440 16 O -0.548 6.548 17 C -0.543 4.543 18 H 0.069 0.931 19 C 0.090 3.910 20 N -0.766 5.766 21 Si 0.902 3.098 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.269 1.269 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.401 0.599 31 H 0.096 0.904 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 3.019 7.806 8.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 N -0.378 5.378 4 C 0.422 3.578 5 O -0.485 6.485 6 O -0.246 6.246 7 C 0.040 3.960 8 C 0.049 3.951 9 H 0.073 0.927 10 C -0.164 4.164 11 C -0.149 4.149 12 C -0.175 4.175 13 C 0.000 4.000 14 N -0.378 5.378 15 C 0.366 3.634 16 O -0.430 6.430 17 C -0.580 4.580 18 H 0.087 0.913 19 C -0.129 4.129 20 N -0.394 5.394 21 Si 0.727 3.273 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.194 1.194 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.235 0.765 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.058 0.942 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.029 1.748 7.815 8.009 hybrid contribution -0.501 0.840 -0.895 1.325 sum -0.531 2.588 6.921 7.408 Atomic orbital electron populations 1.21995 0.94654 1.02756 1.02637 1.21098 0.93548 0.81841 1.02045 1.44477 1.04533 1.08702 1.80092 1.17860 0.82992 0.82310 0.74592 1.90858 1.55397 1.45312 1.56944 1.86248 1.27241 1.26073 1.85068 1.22680 0.77485 0.94942 1.00937 1.20816 0.93393 0.92516 0.88391 0.92710 1.21841 0.96040 0.97007 1.01510 1.21426 1.00228 0.95695 0.97544 1.21975 0.98321 1.00306 0.96923 1.21394 0.92672 0.83899 1.02079 1.48205 1.61661 1.11671 1.16217 1.18149 0.77070 0.85853 0.82303 1.90570 1.60885 1.15532 1.76031 1.20893 1.42563 0.93769 1.00790 0.91314 1.25664 0.93901 0.94454 0.98924 1.69995 1.33546 1.04665 1.31209 0.86529 0.79671 0.79443 0.81653 1.19399 1.20715 1.19393 0.92172 0.91705 0.90966 0.91626 0.92097 0.76473 0.88559 0.94681 0.91786 0.91393 0.92304 0.92471 0.91724 0.92037 0.88923 0.94203 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.03 37.16 0.37 -1.46 16 2 C 0.14 2.15 6.39 -4.04 -0.03 2.12 16 3 N -0.72 -13.68 5.56 -65.28 -0.36 -14.04 16 4 C 0.67 15.79 8.04 54.05 0.43 16.23 16 5 O -0.59 -15.48 16.13 -19.27 -0.31 -15.80 16 6 O -0.33 -8.04 7.88 -48.74 -0.38 -8.42 16 7 C 0.11 2.54 4.02 37.16 0.15 2.69 16 8 C 0.15 2.99 3.18 -67.60 -0.22 2.78 16 9 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 10 C -0.13 -1.96 5.37 -26.61 -0.14 -2.10 16 11 C -0.11 -1.51 5.88 -26.69 -0.16 -1.66 16 12 C -0.14 -2.03 6.08 -26.61 -0.16 -2.20 16 13 C 0.12 2.25 6.29 -3.70 -0.02 2.22 16 14 N -0.64 -14.07 2.97 -166.86 -0.50 -14.56 16 15 C 0.56 15.21 7.31 -12.99 -0.09 15.11 16 16 O -0.55 -16.26 8.68 -20.07 -0.17 -16.43 16 17 C -0.54 -14.78 8.70 -35.63 -0.31 -15.09 16 18 H 0.07 1.72 5.95 -52.49 -0.31 1.41 16 19 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 20 N -0.77 -22.38 11.87 55.55 0.66 -21.72 16 21 Si 0.90 19.89 29.56 -169.99 -5.02 14.86 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.40 6.93 8.58 -40.81 -0.35 6.58 16 31 H 0.10 2.53 6.37 -51.93 -0.33 2.20 16 32 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.79 5.50 -51.93 -0.29 1.50 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -34.57 329.44 -7.73 -42.30 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.33 Total: 7.85 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: -0.27 Total: 20.99 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.20 Total: -50.33 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.87 Total: -40.65 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.57 -7.73 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286105044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.922 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds