Wall clock time and date at job start Tue Mar 31 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47371 * 2 1 4 4 C 1.34774 * 120.00230 * 180.02562 * 3 2 1 5 5 O 1.21504 * 120.00167 * 359.97438 * 4 3 2 6 6 O 1.34644 * 120.00011 * 179.97438 * 4 3 2 7 7 C 1.45192 * 116.99907 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47137 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.58196 * 51.89159 * 8 7 6 10 10 C 1.53197 * 109.58663 * 172.31962 * 8 7 6 11 11 C 1.53040 * 109.31212 * 174.42711 * 10 8 7 12 12 C 1.53043 * 109.53634 * 298.63284 * 11 10 8 13 13 C 1.53200 * 109.31290 * 61.36628 * 12 11 10 14 14 N 1.46922 * 109.58753 * 291.60964 * 8 7 6 15 15 C 1.34777 * 120.63172 * 6.62294 * 14 8 7 16 16 O 1.21683 * 119.99816 * 353.87827 * 15 14 8 17 17 C 1.46371 * 120.00033 * 173.87155 * 15 14 8 18 18 H 1.08002 * 120.00443 * 351.27696 * 17 15 14 19 19 C 1.40046 * 120.00206 * 171.27050 * 17 15 14 20 20 N 1.30679 * 119.99904 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 120.00600 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47227 * 59.99697 * 21 19 17 23 23 H 1.48495 * 109.47630 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46540 * 300.00049 * 21 19 17 25 25 H 1.09001 * 109.46939 * 300.00529 * 1 2 3 26 26 H 1.09003 * 109.46758 * 60.00278 * 1 2 3 27 27 H 1.08994 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47513 * 239.99966 * 2 1 3 29 29 H 1.09001 * 109.47334 * 119.99233 * 2 1 3 30 30 H 0.97012 * 119.99780 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47377 * 60.00001 * 7 6 4 32 32 H 1.09005 * 109.47516 * 300.00004 * 7 6 4 33 33 H 1.08999 * 109.49457 * 294.37227 * 10 8 7 34 34 H 1.08994 * 109.49909 * 54.44287 * 10 8 7 35 35 H 1.08996 * 109.46331 * 58.65096 * 11 10 8 36 36 H 1.08992 * 109.46328 * 178.62961 * 11 10 8 37 37 H 1.09000 * 109.49609 * 301.41653 * 12 11 10 38 38 H 1.09000 * 109.49808 * 181.31624 * 12 11 10 39 39 H 1.08997 * 109.58432 * 185.57876 * 13 12 11 40 40 H 1.09000 * 109.58304 * 65.15129 * 13 12 11 41 41 H 0.97000 * 120.00136 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 -0.0005 5 8 4.1330 0.7040 -0.0005 6 8 3.7923 2.8969 -0.0010 7 6 5.2317 3.0871 -0.0010 8 6 5.5483 4.5840 -0.0023 9 1 5.0037 5.0733 0.8053 10 6 7.0540 4.7906 0.1906 11 6 7.3828 6.2786 0.0497 12 6 7.0060 6.7552 -1.3550 13 6 5.4997 6.5709 -1.5654 14 7 5.1517 5.1702 -1.2898 15 6 4.4809 4.4373 -2.2005 16 8 4.2956 3.2501 -2.0089 17 6 3.9754 5.0696 -3.4200 18 1 4.0137 6.1436 -3.5273 19 6 3.4420 4.2819 -4.4478 20 7 3.3952 2.9824 -4.3178 21 14 2.7974 5.0885 -6.0044 22 1 3.8950 5.8418 -6.6625 23 1 2.2893 4.0440 -6.9294 24 1 1.6949 6.0214 -5.6583 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.3880 2.1186 -0.0004 31 1 5.6593 2.6249 -0.8908 32 1 5.6592 2.6257 0.8892 33 1 7.3441 4.4464 1.1833 34 1 7.5987 4.2240 -0.5646 35 1 6.8189 6.8468 0.7894 36 1 8.4499 6.4315 0.2106 37 1 7.5511 6.1705 -2.0960 38 1 7.2620 7.8092 -1.4624 39 1 5.2422 6.8154 -2.5959 40 1 4.9532 7.2239 -0.8851 41 1 3.0261 2.4368 -5.0298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286105044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:21 Heat of formation + Delta-G solvation = -133.114528 kcal Electronic energy + Delta-G solvation = -24128.280399 eV Core-core repulsion = 20621.696337 eV Total energy + Delta-G solvation = -3506.584062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36877 -40.33662 -37.57615 -37.46462 -36.11338 -34.62939 -33.30889 -32.93478 -31.31585 -28.52365 -27.55012 -25.21957 -24.06289 -23.24430 -22.28609 -21.72062 -20.57423 -19.47441 -18.26573 -17.94202 -17.57514 -17.13937 -16.40338 -16.06924 -15.99276 -15.50855 -15.33046 -15.18652 -14.71241 -14.45936 -14.32473 -13.71097 -13.58747 -13.37839 -13.20452 -12.99961 -12.92253 -12.73351 -12.72797 -12.42100 -12.36645 -12.08573 -11.95579 -11.75198 -11.62326 -11.40725 -11.26814 -11.21328 -10.81893 -10.12895 -9.25802 -8.87242 -8.16128 -6.72287 1.38833 1.40945 1.45469 1.51625 2.09920 2.24824 2.56956 2.84631 3.34637 3.73034 3.86594 4.03646 4.07196 4.16609 4.18707 4.31146 4.32119 4.39311 4.43253 4.47460 4.66222 4.86573 4.88524 4.97842 5.02509 5.05387 5.09051 5.17082 5.20637 5.23758 5.28182 5.43371 5.44080 5.56726 5.73771 5.88268 6.21151 6.50033 6.53340 6.97097 7.53183 7.55072 8.59120 8.78853 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.008068 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.396006 B = 3469.826767 C = 5601.523080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.131 3.869 3 N -0.705 5.705 4 C 0.654 3.346 5 O -0.629 6.629 6 O -0.345 6.345 7 C 0.118 3.882 8 C 0.153 3.847 9 H 0.072 0.928 10 C -0.120 4.120 11 C -0.105 4.105 12 C -0.130 4.130 13 C 0.117 3.883 14 N -0.643 5.643 15 C 0.542 3.458 16 O -0.584 6.584 17 C -0.568 4.568 18 H 0.084 0.916 19 C 0.036 3.964 20 N -0.819 5.819 21 Si 0.984 3.016 22 H -0.257 1.257 23 H -0.281 1.281 24 H -0.257 1.257 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.410 0.590 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.559 5.368 8.669 10.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 N -0.366 5.366 4 C 0.409 3.591 5 O -0.523 6.523 6 O -0.257 6.257 7 C 0.043 3.957 8 C 0.049 3.951 9 H 0.090 0.910 10 C -0.158 4.158 11 C -0.142 4.142 12 C -0.168 4.168 13 C -0.006 4.006 14 N -0.381 5.381 15 C 0.347 3.653 16 O -0.468 6.468 17 C -0.605 4.605 18 H 0.102 0.898 19 C -0.179 4.179 20 N -0.449 5.449 21 Si 0.805 3.195 22 H -0.181 1.181 23 H -0.206 1.206 24 H -0.181 1.181 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.245 0.755 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.263 4.154 8.709 9.653 hybrid contribution -0.403 0.097 -1.080 1.157 sum -0.666 4.251 7.629 8.759 Atomic orbital electron populations 1.21948 0.90745 1.04731 1.03245 1.21387 0.96646 0.79834 1.01247 1.44671 1.03027 1.10513 1.78384 1.18310 0.84245 0.81925 0.74639 1.90810 1.56612 1.46065 1.58806 1.86235 1.28156 1.26342 1.84989 1.22687 0.76663 0.97002 0.99303 1.21083 0.96278 0.90263 0.87519 0.90974 1.21855 0.92551 0.98965 1.02471 1.21435 1.02333 0.93611 0.96815 1.21924 0.95206 1.02194 0.97514 1.21610 0.95504 0.81821 1.01653 1.48097 1.60683 1.13007 1.16301 1.18472 0.77535 0.85885 0.83406 1.90565 1.62113 1.17026 1.77140 1.21389 1.42898 0.94751 1.01432 0.89766 1.26761 0.93608 0.94814 1.02700 1.70189 1.35303 1.06722 1.32646 0.85274 0.79365 0.78335 0.76570 1.18065 1.20571 1.18103 0.90282 0.92279 0.88268 0.94072 0.91274 0.75478 0.93504 0.92822 0.88872 0.93501 0.90406 0.89594 0.93744 0.88600 0.90645 0.92111 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 10.03 71.98 0.72 -2.41 16 2 C 0.13 4.13 6.39 86.38 0.55 4.68 16 3 N -0.71 -27.65 5.56 -590.85 -3.29 -30.93 16 4 C 0.65 32.32 8.04 129.79 1.04 33.36 16 5 O -0.63 -34.50 16.13 19.83 0.32 -34.18 16 6 O -0.35 -17.25 7.88 -47.49 -0.37 -17.63 16 7 C 0.12 5.45 4.02 71.98 0.29 5.74 16 8 C 0.15 5.87 3.18 44.98 0.14 6.01 16 9 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 10 C -0.12 -3.53 5.37 30.67 0.16 -3.36 16 11 C -0.10 -2.43 5.88 30.62 0.18 -2.25 16 12 C -0.13 -3.52 6.08 30.68 0.19 -3.33 16 13 C 0.12 4.08 6.29 86.36 0.54 4.62 16 14 N -0.64 -28.47 2.97 -800.06 -2.38 -30.85 16 15 C 0.54 30.47 7.31 86.36 0.63 31.10 16 16 O -0.58 -36.49 8.68 19.87 0.17 -36.32 16 17 C -0.57 -31.56 8.70 24.83 0.22 -31.35 16 18 H 0.08 4.25 5.95 -2.91 -0.02 4.23 16 19 C 0.04 1.99 5.50 85.30 0.47 2.46 16 20 N -0.82 -49.93 11.87 21.84 0.26 -49.67 16 21 Si 0.98 41.27 29.56 68.60 2.03 43.30 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.41 14.38 8.58 -92.70 -0.80 13.58 16 31 H 0.05 2.62 6.37 -2.38 -0.02 2.61 16 32 H 0.05 2.22 8.13 -2.38 -0.02 2.20 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 2.86 5.50 -2.39 -0.01 2.85 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.27 15.16 8.29 -92.71 -0.77 14.39 16 Total: -1.00 -80.73 329.44 2.12 -78.61 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.24 Total: 32.41 kcal Atomic # 6 Polarization: 40.13 SS G_CDS: 5.14 Total: 45.27 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -5.40 Total: -111.46 kcal Atomic # 8 Polarization: -88.25 SS G_CDS: 0.12 Total: -88.13 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -80.73 2.12 -78.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286105044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.503 kcal (2) G-P(sol) polarization free energy of solvation -80.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds