Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.70710 * 2 1 4 4 C 1.53292 * 109.68032 * 239.46145 * 2 1 3 5 5 O 1.42960 * 109.22314 * 187.97315 * 4 2 1 6 6 C 1.42965 * 114.16736 * 62.57930 * 5 4 2 7 7 C 1.53712 * 109.14809 * 297.29487 * 6 5 4 8 8 N 1.47147 * 108.16307 * 52.53169 * 7 6 5 9 9 C 1.34780 * 120.98054 * 129.43277 * 8 7 6 10 10 O 1.21351 * 120.00115 * 187.77846 * 9 8 7 11 11 C 1.49455 * 119.99915 * 7.78207 * 9 8 7 12 12 O 1.21350 * 119.99875 * 6.36789 * 11 9 8 13 13 N 1.34775 * 119.99928 * 186.36434 * 11 9 8 14 14 C 1.46505 * 119.99704 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.46965 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47042 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.47138 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99943 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47343 * 59.99645 * 21 19 17 23 23 H 1.48493 * 109.47348 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47334 * 299.99780 * 21 19 17 25 25 H 1.09000 * 109.46956 * 305.90677 * 1 2 3 26 26 H 1.08994 * 109.47314 * 65.91617 * 1 2 3 27 27 H 1.09001 * 109.46889 * 185.91281 * 1 2 3 28 28 H 1.09002 * 109.51783 * 307.90012 * 4 2 1 29 29 H 1.09004 * 109.51433 * 67.99698 * 4 2 1 30 30 H 1.09000 * 109.50930 * 57.34642 * 6 5 4 31 31 H 1.08999 * 109.51029 * 177.44615 * 6 5 4 32 32 H 1.09003 * 109.83121 * 292.85452 * 7 6 5 33 33 H 1.08999 * 109.74745 * 172.16239 * 7 6 5 34 34 H 0.97002 * 120.00040 * 0.02562 * 13 11 9 35 35 H 1.08991 * 109.46998 * 59.99865 * 14 13 11 36 36 H 1.08999 * 109.46736 * 299.99938 * 14 13 11 37 37 H 1.09002 * 109.47318 * 59.99580 * 15 14 13 38 38 H 1.09007 * 109.46905 * 300.00230 * 15 14 13 39 39 H 1.09004 * 109.47055 * 60.00128 * 16 15 14 40 40 H 1.08998 * 109.47236 * 299.99375 * 16 15 14 41 41 H 0.97003 * 119.99532 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0463 -0.7334 -1.2432 5 8 3.4636 -0.8911 -1.1420 6 6 3.8860 -1.6895 -0.0338 7 6 3.4648 -1.0001 1.2739 8 7 2.0257 -0.7040 1.1934 9 6 1.1871 -1.0620 2.1859 10 8 -0.0114 -0.9378 2.0421 11 6 1.7334 -1.6118 3.4638 12 8 2.9318 -1.6287 3.6539 13 7 0.8950 -2.0888 4.4051 14 6 1.4305 -2.6273 5.6580 15 6 0.2764 -3.0987 6.5449 16 6 0.8356 -3.6616 7.8530 17 6 -0.3012 -4.1255 8.7270 18 1 -1.3206 -4.0280 8.3838 19 6 -0.0399 -4.6732 9.9650 20 7 1.2015 -4.7913 10.3830 21 14 -1.4489 -5.2474 11.0485 22 1 -2.2166 -6.3049 10.3432 23 1 -0.9062 -5.7938 12.3181 24 1 -2.3443 -4.1004 11.3455 25 1 -0.3633 0.6027 0.8324 26 1 -0.3633 0.4193 -0.9381 27 1 -0.3633 -1.0222 0.1059 28 1 1.5747 -1.7139 -1.3096 29 1 1.8065 -0.1530 -2.1341 30 1 3.4211 -2.6734 -0.0958 31 1 4.9705 -1.7972 -0.0552 32 1 4.0239 -0.0729 1.3998 33 1 3.6566 -1.6626 2.1179 34 1 -0.0630 -2.0756 4.2530 35 1 1.9935 -1.8509 6.1758 36 1 2.0880 -3.4688 5.4400 37 1 -0.2864 -3.8753 6.0268 38 1 -0.3816 -2.2574 6.7628 39 1 1.3985 -2.8853 8.3714 40 1 1.4932 -4.5031 7.6348 41 1 1.3852 -5.1763 11.2542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286368592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = -98.619783 kcal Electronic energy + Delta-G solvation = -22505.240688 eV Core-core repulsion = 19000.152431 eV Total energy + Delta-G solvation = -3505.088257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30624 -39.40388 -38.33741 -35.99519 -35.01106 -33.40083 -33.10521 -31.30382 -29.18571 -27.20531 -26.74489 -24.85253 -23.36005 -22.91314 -21.43083 -20.81383 -19.60429 -17.80247 -17.08777 -16.68122 -16.43302 -16.34278 -15.96656 -15.56139 -15.24760 -15.12396 -14.91592 -14.48088 -14.08130 -13.86690 -13.34829 -13.05139 -12.96713 -12.38267 -12.28724 -12.08947 -11.92001 -11.82885 -11.54447 -11.20739 -10.92212 -10.83329 -10.69495 -10.63849 -10.56973 -9.94131 -9.60082 -9.22237 -9.12653 -8.98335 -8.82570 -8.40491 -6.05395 -4.08652 1.31025 2.12174 3.08957 3.29104 3.30514 3.35301 3.37618 3.47747 4.23881 4.34679 4.42186 4.56628 4.66411 4.74032 4.86304 5.01472 5.22127 5.26304 5.30600 5.39700 5.48542 5.53028 5.63133 5.65692 5.77861 5.86476 6.02159 6.20664 6.29374 6.48770 6.65477 6.71594 6.80761 6.90762 7.22410 7.57913 7.63840 7.69501 7.92440 7.96653 8.33663 8.97592 9.55885 11.05855 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.002720 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.024846 B =10291.112055 C =10807.486689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.106 3.894 3 H 0.084 0.916 4 C 0.052 3.948 5 O -0.382 6.382 6 C 0.046 3.954 7 C 0.040 3.960 8 N -0.587 5.587 9 C 0.511 3.489 10 O -0.513 6.513 11 C 0.499 3.501 12 O -0.520 6.520 13 N -0.688 5.688 14 C 0.113 3.887 15 C -0.123 4.123 16 C 0.025 3.975 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.411 0.589 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 8.592 -22.998 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.003 3.997 3 H 0.102 0.898 4 C -0.026 4.026 5 O -0.300 6.300 6 C -0.032 4.032 7 C -0.081 4.081 8 N -0.322 5.322 9 C 0.294 3.706 10 O -0.388 6.388 11 C 0.280 3.720 12 O -0.399 6.399 13 N -0.338 5.338 14 C -0.009 4.009 15 C -0.161 4.161 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.190 8.651 -22.885 24.672 hybrid contribution -1.235 -0.354 0.789 1.508 sum 1.955 8.297 -22.096 23.683 Atomic orbital electron populations 1.22175 0.91567 1.04488 1.01522 1.22144 0.96857 0.96217 0.84502 0.89778 1.23089 0.81722 1.00363 0.97391 1.87955 1.21730 1.72065 1.48285 1.23178 1.01161 0.93574 0.85248 1.23589 0.79121 1.03848 1.01582 1.48009 1.09151 1.56660 1.18390 1.20280 0.86407 0.79207 0.84663 1.90809 1.14687 1.53017 1.80330 1.20154 0.86915 0.79740 0.85194 1.90506 1.14621 1.56333 1.78454 1.46114 1.11075 1.59117 1.17532 1.21876 0.98370 0.98661 0.82012 1.21932 0.95978 1.00290 0.97887 1.19023 0.96556 0.96148 0.89519 1.21162 0.93043 1.40714 1.01349 0.92624 1.25019 0.95587 0.95840 0.97947 1.69950 1.18320 1.44991 1.20042 0.86630 0.82367 0.79080 0.79760 1.20217 1.21253 1.20208 0.90528 0.92994 0.90635 0.92428 0.87547 0.92591 0.87317 0.90347 0.83434 0.75256 0.90988 0.90988 0.92434 0.92411 0.96201 0.96201 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.62 37.16 0.28 -1.01 16 2 C 0.11 0.97 3.68 -67.42 -0.25 0.72 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.05 0.42 6.29 37.31 0.23 0.65 16 5 O -0.38 -3.67 10.74 -35.23 -0.38 -4.05 16 6 C 0.05 0.39 7.00 37.53 0.26 0.65 16 7 C 0.04 0.40 6.16 -3.32 -0.02 0.38 16 8 N -0.59 -6.49 3.01 -165.00 -0.50 -6.99 16 9 C 0.51 6.62 7.67 -11.58 -0.09 6.53 16 10 O -0.51 -7.09 12.04 5.50 0.07 -7.02 16 11 C 0.50 7.11 7.75 -11.58 -0.09 7.02 16 12 O -0.52 -8.10 13.20 5.50 0.07 -8.03 16 13 N -0.69 -9.81 5.55 -60.73 -0.34 -10.15 16 14 C 0.11 1.85 5.67 -4.04 -0.02 1.83 16 15 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 16 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.08 0.84 6.84 -51.93 -0.36 0.48 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.81 6.75 -51.93 -0.35 0.46 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.15 1.70 4.48 -54.05 -0.24 1.46 16 34 H 0.41 5.36 7.96 -40.82 -0.32 5.04 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 333.26 15.07 5.02 5.02 Total: -1.00 -30.88 333.26 -7.03 -37.91 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.31 Total: 1.18 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -0.38 Total: 1.56 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -0.10 Total: -42.85 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.24 Total: -19.11 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.88 -7.03 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286368592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.710 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds