Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.70710 * 2 1 4 4 C 1.53292 * 109.68032 * 239.46145 * 2 1 3 5 5 O 1.42960 * 109.22314 * 187.97315 * 4 2 1 6 6 C 1.42965 * 114.16736 * 62.57930 * 5 4 2 7 7 C 1.53712 * 109.14809 * 297.29487 * 6 5 4 8 8 N 1.47147 * 108.16307 * 52.53169 * 7 6 5 9 9 C 1.34780 * 120.98054 * 129.43277 * 8 7 6 10 10 O 1.21351 * 120.00115 * 187.77846 * 9 8 7 11 11 C 1.49455 * 119.99915 * 7.78207 * 9 8 7 12 12 O 1.21350 * 119.99875 * 6.36789 * 11 9 8 13 13 N 1.34775 * 119.99928 * 186.36434 * 11 9 8 14 14 C 1.46505 * 119.99704 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.46965 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47042 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.47138 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99943 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47343 * 59.99645 * 21 19 17 23 23 H 1.48493 * 109.47348 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47334 * 299.99780 * 21 19 17 25 25 H 1.09000 * 109.46956 * 305.90677 * 1 2 3 26 26 H 1.08994 * 109.47314 * 65.91617 * 1 2 3 27 27 H 1.09001 * 109.46889 * 185.91281 * 1 2 3 28 28 H 1.09002 * 109.51783 * 307.90012 * 4 2 1 29 29 H 1.09004 * 109.51433 * 67.99698 * 4 2 1 30 30 H 1.09000 * 109.50930 * 57.34642 * 6 5 4 31 31 H 1.08999 * 109.51029 * 177.44615 * 6 5 4 32 32 H 1.09003 * 109.83121 * 292.85452 * 7 6 5 33 33 H 1.08999 * 109.74745 * 172.16239 * 7 6 5 34 34 H 0.97002 * 120.00040 * 0.02562 * 13 11 9 35 35 H 1.08991 * 109.46998 * 59.99865 * 14 13 11 36 36 H 1.08999 * 109.46736 * 299.99938 * 14 13 11 37 37 H 1.09002 * 109.47318 * 59.99580 * 15 14 13 38 38 H 1.09007 * 109.46905 * 300.00230 * 15 14 13 39 39 H 1.09004 * 109.47055 * 60.00128 * 16 15 14 40 40 H 1.08998 * 109.47236 * 299.99375 * 16 15 14 41 41 H 0.97003 * 119.99532 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0463 -0.7334 -1.2432 5 8 3.4636 -0.8911 -1.1420 6 6 3.8860 -1.6895 -0.0338 7 6 3.4648 -1.0001 1.2739 8 7 2.0257 -0.7040 1.1934 9 6 1.1871 -1.0620 2.1859 10 8 -0.0114 -0.9378 2.0421 11 6 1.7334 -1.6118 3.4638 12 8 2.9318 -1.6287 3.6539 13 7 0.8950 -2.0888 4.4051 14 6 1.4305 -2.6273 5.6580 15 6 0.2764 -3.0987 6.5449 16 6 0.8356 -3.6616 7.8530 17 6 -0.3012 -4.1255 8.7270 18 1 -1.3206 -4.0280 8.3838 19 6 -0.0399 -4.6732 9.9650 20 7 1.2015 -4.7913 10.3830 21 14 -1.4489 -5.2474 11.0485 22 1 -2.2166 -6.3049 10.3432 23 1 -0.9062 -5.7938 12.3181 24 1 -2.3443 -4.1004 11.3455 25 1 -0.3633 0.6027 0.8324 26 1 -0.3633 0.4193 -0.9381 27 1 -0.3633 -1.0222 0.1059 28 1 1.5747 -1.7139 -1.3096 29 1 1.8065 -0.1530 -2.1341 30 1 3.4211 -2.6734 -0.0958 31 1 4.9705 -1.7972 -0.0552 32 1 4.0239 -0.0729 1.3998 33 1 3.6566 -1.6626 2.1179 34 1 -0.0630 -2.0756 4.2530 35 1 1.9935 -1.8509 6.1758 36 1 2.0880 -3.4688 5.4400 37 1 -0.2864 -3.8753 6.0268 38 1 -0.3816 -2.2574 6.7628 39 1 1.3985 -2.8853 8.3714 40 1 1.4932 -4.5031 7.6348 41 1 1.3852 -5.1763 11.2542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286368592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = -120.574768 kcal Electronic energy + Delta-G solvation = -22506.192728 eV Core-core repulsion = 19000.152431 eV Total energy + Delta-G solvation = -3506.040297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.28082 -40.39324 -39.27244 -37.29793 -36.05258 -35.16807 -33.89169 -33.06337 -30.03211 -28.87014 -27.45717 -26.21953 -24.52877 -23.99338 -22.42976 -22.37758 -20.74490 -18.83626 -18.50483 -17.97900 -17.46924 -17.32630 -17.02563 -16.52805 -16.42284 -16.34135 -16.01832 -15.86024 -15.28760 -15.03004 -14.35882 -14.25515 -13.86747 -13.80263 -13.72691 -13.56523 -13.08621 -12.75459 -12.73272 -12.57105 -12.43936 -12.25086 -11.99917 -11.73239 -11.61892 -11.50107 -11.31405 -11.23190 -10.54685 -10.34114 -10.05965 -9.67838 -8.19929 -6.30903 0.23499 1.13469 1.41919 1.44228 1.52165 2.00990 2.28095 2.42474 2.82151 3.14065 3.20113 3.61086 3.84464 3.99404 4.01037 4.06959 4.15644 4.17457 4.29416 4.51472 4.54728 4.62090 4.75415 4.78028 4.82444 4.90776 4.97471 5.02982 5.06551 5.14473 5.29310 5.46096 5.51052 5.70299 5.83981 5.85559 6.05059 6.11742 6.23227 6.61179 6.85039 6.86122 7.38578 8.91774 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.002720 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.024846 B =10291.112055 C =10807.486689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.102 3.898 3 H 0.094 0.906 4 C 0.053 3.947 5 O -0.392 6.392 6 C 0.049 3.951 7 C 0.040 3.960 8 N -0.584 5.584 9 C 0.513 3.487 10 O -0.524 6.524 11 C 0.499 3.501 12 O -0.535 6.535 13 N -0.683 5.683 14 C 0.128 3.872 15 C -0.106 4.106 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.064 0.936 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.267 1.267 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.133 0.867 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.419 0.581 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.065 0.935 39 H -0.004 1.004 40 H -0.003 1.003 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 9.030 -24.570 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.000 4.000 3 H 0.112 0.888 4 C -0.024 4.024 5 O -0.311 6.311 6 C -0.028 4.028 7 C -0.081 4.081 8 N -0.318 5.318 9 C 0.295 3.705 10 O -0.402 6.402 11 C 0.280 3.720 12 O -0.415 6.415 13 N -0.335 5.335 14 C 0.005 3.995 15 C -0.144 4.144 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.192 1.192 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.101 0.899 33 H 0.151 0.849 34 H 0.256 0.744 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.244 9.103 -24.496 26.229 hybrid contribution -0.889 -0.456 1.224 1.579 sum 1.355 8.647 -23.273 24.864 Atomic orbital electron populations 1.22047 0.91540 1.03228 1.02187 1.22361 0.96882 0.96676 0.84084 0.88829 1.23210 0.80950 1.00639 0.97598 1.87949 1.22572 1.72176 1.48374 1.23223 1.02368 0.93128 0.84084 1.23577 0.78580 1.03905 1.02073 1.48148 1.09425 1.55888 1.18377 1.19988 0.86407 0.79570 0.84522 1.90819 1.15018 1.53832 1.80481 1.20473 0.86638 0.79266 0.85620 1.90522 1.15280 1.56760 1.78920 1.45916 1.11536 1.59227 1.16835 1.21488 0.97145 0.98318 0.82587 1.21639 0.96592 1.00587 0.95579 1.18920 0.95564 0.94764 0.91939 1.21661 0.94084 1.40454 1.02012 0.91806 1.25967 0.98235 0.96004 0.99640 1.70087 1.20592 1.46052 1.20594 0.85513 0.79035 0.78920 0.77657 1.19138 1.21058 1.19187 0.92408 0.90242 0.92280 0.92509 0.84925 0.92574 0.85372 0.89865 0.84909 0.74382 0.91731 0.91433 0.91449 0.91598 0.98580 0.98454 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 7.62 71.98 0.55 -1.69 16 2 C 0.10 1.67 3.68 44.97 0.17 1.84 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.05 0.72 6.29 72.08 0.45 1.17 16 5 O -0.39 -6.62 10.74 -148.98 -1.60 -8.22 16 6 C 0.05 0.75 7.00 72.22 0.51 1.25 16 7 C 0.04 0.76 6.16 86.50 0.53 1.29 16 8 N -0.58 -12.26 3.01 -794.29 -2.39 -14.65 16 9 C 0.51 12.94 7.67 87.27 0.67 13.61 16 10 O -0.52 -14.17 12.04 -3.25 -0.04 -14.21 16 11 C 0.50 14.02 7.75 87.27 0.68 14.70 16 12 O -0.54 -16.63 13.20 -3.25 -0.04 -16.67 16 13 N -0.68 -19.17 5.55 -464.41 -2.58 -21.74 16 14 C 0.13 4.19 5.67 86.38 0.49 4.68 16 15 C -0.11 -3.99 5.27 30.59 0.16 -3.83 16 16 C 0.03 1.31 4.97 29.85 0.15 1.45 16 17 C -0.54 -30.07 9.11 25.60 0.23 -29.84 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 19 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 20 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 21 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H 0.06 1.20 6.84 -2.39 -0.02 1.19 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 1.20 6.75 -2.39 -0.02 1.19 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.13 3.00 4.48 -35.91 -0.16 2.84 16 34 H 0.42 10.55 7.96 -92.71 -0.74 9.81 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 40 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -66.09 333.26 0.85 -65.25 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.14 Total: 15.50 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.05 Total: 5.07 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -4.69 Total: -92.28 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.68 Total: -39.10 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -66.09 0.85 -65.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286368592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.330 kcal (2) G-P(sol) polarization free energy of solvation -66.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds