Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47076 * 2 1 4 4 C 1.34631 * 116.99994 * 180.02562 * 3 2 1 5 5 O 1.21503 * 120.00216 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00113 * 180.02562 * 4 3 2 7 7 C 1.47423 * 125.64708 * 359.96901 * 6 4 3 8 8 C 1.54909 * 104.83351 * 155.90981 * 7 6 4 9 9 C 1.55158 * 101.61642 * 36.99324 * 8 7 6 10 10 H 1.08999 * 110.72042 * 82.87870 * 9 8 7 11 11 N 1.46497 * 110.72259 * 206.15767 * 9 8 7 12 12 C 1.34772 * 119.99998 * 204.99892 * 11 9 8 13 13 O 1.21285 * 119.99933 * 359.97438 * 12 11 9 14 14 C 1.50694 * 120.00258 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.47590 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47252 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00067 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99891 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99743 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47061 * 59.99710 * 20 18 16 22 22 H 1.48492 * 109.47038 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46929 * 299.99761 * 20 18 16 24 24 C 1.47016 * 125.64850 * 180.02562 * 6 4 3 25 25 H 1.09000 * 109.47137 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47020 * 300.00137 * 1 2 3 27 27 H 1.09001 * 109.46824 * 60.00255 * 1 2 3 28 28 H 1.09000 * 109.47020 * 239.99863 * 2 1 3 29 29 H 1.09001 * 109.46824 * 119.99745 * 2 1 3 30 30 H 1.09000 * 110.36544 * 37.07402 * 7 6 4 31 31 H 1.09002 * 110.46474 * 274.79752 * 7 6 4 32 32 H 1.09002 * 111.00594 * 155.08642 * 8 7 6 33 33 H 1.09002 * 111.00655 * 278.89906 * 8 7 6 34 34 H 0.96994 * 120.00175 * 24.99235 * 11 9 8 35 35 H 1.08999 * 109.47463 * 300.00621 * 14 12 11 36 36 H 1.08998 * 109.46985 * 60.00108 * 14 12 11 37 37 H 1.09000 * 109.46920 * 300.00097 * 15 14 12 38 38 H 1.08998 * 109.46825 * 60.00063 * 15 14 12 39 39 H 0.96998 * 119.99747 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.88531 * 300.42930 * 24 6 4 41 41 H 1.08996 * 109.88671 * 61.44743 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0889 0.5818 -0.0005 6 7 3.8639 2.7908 0.0000 7 6 3.0853 4.0427 0.0004 8 6 4.0366 5.1012 0.6121 9 6 5.4061 4.6655 0.0272 10 1 5.5387 5.0608 -0.9799 11 7 6.5021 5.0913 0.9012 12 6 7.7356 5.2796 0.3920 13 8 7.9385 5.0962 -0.7896 14 6 8.8629 5.7181 1.2908 15 6 10.1462 5.8564 0.4692 16 6 11.2736 6.2943 1.3683 17 1 11.0930 6.4573 2.4204 18 6 12.5356 6.4869 0.8474 19 7 12.7556 6.2879 -0.4339 20 14 13.9329 7.0304 1.9616 21 1 14.1362 6.0191 3.0299 22 1 15.1781 7.1656 1.1639 23 1 13.5951 8.3392 2.5767 24 6 5.2953 3.1260 -0.0011 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1926 3.9339 0.6164 31 1 2.8115 4.3216 -1.0171 32 1 3.7708 6.1044 0.2789 33 1 4.0397 5.0413 1.7004 34 1 6.3399 5.2377 1.8462 35 1 8.6149 6.6787 1.7425 36 1 9.0122 4.9758 2.0749 37 1 10.3940 4.8956 0.0180 38 1 9.9972 6.5985 -0.3151 39 1 13.6433 6.4238 -0.8004 40 1 5.7755 2.7043 0.8820 41 1 5.7672 2.7342 -0.9021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292024457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = -125.570426 kcal Electronic energy + Delta-G solvation = -21942.190144 eV Core-core repulsion = 18435.933219 eV Total energy + Delta-G solvation = -3506.256925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81410 -39.57753 -38.13619 -36.50118 -34.20542 -33.45972 -32.11163 -31.20791 -30.53687 -28.74480 -25.80140 -24.44922 -23.10641 -22.08644 -21.25360 -20.50552 -19.74618 -18.43630 -17.33668 -17.01303 -16.90586 -16.26481 -15.63917 -15.21800 -14.86814 -14.58711 -14.40405 -14.30731 -13.57537 -13.44501 -13.16885 -13.08197 -12.82783 -12.49697 -12.30932 -12.15308 -12.07368 -11.90646 -11.73519 -11.17745 -11.13993 -10.91037 -10.80486 -10.76645 -10.61984 -9.96599 -9.68929 -9.23489 -9.08940 -9.03838 -8.93940 -8.31823 -5.95940 -4.00535 1.76752 2.61207 3.14229 3.34425 3.34759 3.39829 3.41885 3.65801 4.15862 4.38223 4.47642 4.58937 4.63018 4.73354 4.91930 4.94712 5.04276 5.15436 5.27211 5.38897 5.40175 5.46048 5.47545 5.55794 5.57437 5.73155 5.80457 5.95500 6.10370 6.19973 6.21478 6.60601 6.86864 7.17023 7.73377 7.77663 7.85355 8.04920 8.06733 8.37782 8.69179 9.07667 9.62967 11.14916 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041439 B = 0.002514 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.528357 B =11134.255280 C =11399.298138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.664 3.336 5 O -0.569 6.569 6 N -0.602 5.602 7 C 0.106 3.894 8 C -0.140 4.140 9 C 0.136 3.864 10 H 0.109 0.891 11 N -0.735 5.735 12 C 0.511 3.489 13 O -0.529 6.529 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.401 0.599 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.024 0.976 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.077 0.923 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.867 -6.267 3.525 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.419 3.581 5 O -0.457 6.457 6 N -0.344 5.344 7 C -0.017 4.017 8 C -0.179 4.179 9 C 0.029 3.971 10 H 0.127 0.873 11 N -0.389 5.389 12 C 0.300 3.700 13 O -0.404 6.404 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.011 4.011 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.235 0.765 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.399 -6.833 2.500 27.383 hybrid contribution 0.719 0.181 1.022 1.262 sum -25.680 -6.653 3.522 26.760 Atomic orbital electron populations 1.21825 0.92491 1.03094 1.03504 1.22965 0.94775 0.78698 1.02904 1.86220 1.21905 1.33209 1.87112 1.17469 0.81128 0.82838 0.76693 1.91027 1.59914 1.38935 1.55848 1.46996 1.08174 1.02997 1.76217 1.22326 0.95044 0.82560 1.01731 1.23116 0.93777 0.99395 1.01569 1.21815 0.86468 0.91803 0.96968 0.87260 1.46170 1.09059 1.71589 1.12062 1.21677 0.83177 0.75441 0.89674 1.90687 1.82821 1.49701 1.17172 1.21881 0.94809 1.01367 0.98923 1.18903 0.88212 0.98371 0.94603 1.21178 0.94054 1.46518 0.94922 0.92641 1.25032 0.98818 0.95559 0.95009 1.69988 1.22143 1.48783 1.11872 0.86641 0.81539 0.79126 0.80545 1.20250 1.21300 1.20265 1.22493 0.78509 0.96268 1.03782 0.89956 0.91492 0.91453 0.91112 0.91147 0.89748 0.90632 0.88627 0.89748 0.76481 0.90082 0.90097 0.95786 0.95793 0.92879 0.90463 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.40 16 2 C 0.08 0.68 6.19 37.16 0.23 0.91 16 3 O -0.37 -4.03 9.75 -40.30 -0.39 -4.43 16 4 C 0.66 8.94 8.62 54.06 0.47 9.41 16 5 O -0.57 -9.60 16.46 -19.27 -0.32 -9.92 16 6 N -0.60 -6.97 3.33 -176.27 -0.59 -7.56 16 7 C 0.11 0.83 6.92 -2.53 -0.02 0.81 16 8 C -0.14 -1.00 6.71 -24.58 -0.16 -1.17 16 9 C 0.14 1.52 3.32 -66.07 -0.22 1.30 16 10 H 0.11 1.39 7.55 -51.93 -0.39 0.99 16 11 N -0.73 -9.23 5.10 -52.00 -0.27 -9.49 16 12 C 0.51 9.27 7.83 -10.99 -0.09 9.18 16 13 O -0.53 -11.94 15.63 5.55 0.09 -11.86 16 14 C -0.13 -2.54 5.64 -27.88 -0.16 -2.69 16 15 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 16 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.39 13.29 55.43 0.74 -26.66 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.11 1.42 6.62 -3.04 -0.02 1.40 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 34 H 0.40 3.80 8.56 -40.82 -0.35 3.45 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -36.44 349.24 -7.21 -43.66 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.60 Total: -1.61 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.12 Total: 5.98 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.12 Total: -43.71 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.62 Total: -26.20 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.44 -7.21 -43.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292024457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.915 kcal (2) G-P(sol) polarization free energy of solvation -36.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds