Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47076 * 2 1 4 4 C 1.34631 * 116.99994 * 180.02562 * 3 2 1 5 5 O 1.21503 * 120.00216 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00113 * 180.02562 * 4 3 2 7 7 C 1.47423 * 125.64708 * 359.96901 * 6 4 3 8 8 C 1.54909 * 104.83351 * 155.90981 * 7 6 4 9 9 C 1.55158 * 101.61642 * 36.99324 * 8 7 6 10 10 H 1.08999 * 110.72042 * 82.87870 * 9 8 7 11 11 N 1.46497 * 110.72259 * 206.15767 * 9 8 7 12 12 C 1.34772 * 119.99998 * 204.99892 * 11 9 8 13 13 O 1.21285 * 119.99933 * 359.97438 * 12 11 9 14 14 C 1.50694 * 120.00258 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.47590 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47252 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00067 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99891 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99743 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47061 * 59.99710 * 20 18 16 22 22 H 1.48492 * 109.47038 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46929 * 299.99761 * 20 18 16 24 24 C 1.47016 * 125.64850 * 180.02562 * 6 4 3 25 25 H 1.09000 * 109.47137 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47020 * 300.00137 * 1 2 3 27 27 H 1.09001 * 109.46824 * 60.00255 * 1 2 3 28 28 H 1.09000 * 109.47020 * 239.99863 * 2 1 3 29 29 H 1.09001 * 109.46824 * 119.99745 * 2 1 3 30 30 H 1.09000 * 110.36544 * 37.07402 * 7 6 4 31 31 H 1.09002 * 110.46474 * 274.79752 * 7 6 4 32 32 H 1.09002 * 111.00594 * 155.08642 * 8 7 6 33 33 H 1.09002 * 111.00655 * 278.89906 * 8 7 6 34 34 H 0.96994 * 120.00175 * 24.99235 * 11 9 8 35 35 H 1.08999 * 109.47463 * 300.00621 * 14 12 11 36 36 H 1.08998 * 109.46985 * 60.00108 * 14 12 11 37 37 H 1.09000 * 109.46920 * 300.00097 * 15 14 12 38 38 H 1.08998 * 109.46825 * 60.00063 * 15 14 12 39 39 H 0.96998 * 119.99747 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.88531 * 300.42930 * 24 6 4 41 41 H 1.08996 * 109.88671 * 61.44743 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0889 0.5818 -0.0005 6 7 3.8639 2.7908 0.0000 7 6 3.0853 4.0427 0.0004 8 6 4.0366 5.1012 0.6121 9 6 5.4061 4.6655 0.0272 10 1 5.5387 5.0608 -0.9799 11 7 6.5021 5.0913 0.9012 12 6 7.7356 5.2796 0.3920 13 8 7.9385 5.0962 -0.7896 14 6 8.8629 5.7181 1.2908 15 6 10.1462 5.8564 0.4692 16 6 11.2736 6.2943 1.3683 17 1 11.0930 6.4573 2.4204 18 6 12.5356 6.4869 0.8474 19 7 12.7556 6.2879 -0.4339 20 14 13.9329 7.0304 1.9616 21 1 14.1362 6.0191 3.0299 22 1 15.1781 7.1656 1.1639 23 1 13.5951 8.3392 2.5767 24 6 5.2953 3.1260 -0.0011 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1926 3.9339 0.6164 31 1 2.8115 4.3216 -1.0171 32 1 3.7708 6.1044 0.2789 33 1 4.0397 5.0413 1.7004 34 1 6.3399 5.2377 1.8462 35 1 8.6149 6.6787 1.7425 36 1 9.0122 4.9758 2.0749 37 1 10.3940 4.8956 0.0180 38 1 9.9972 6.5985 -0.3151 39 1 13.6433 6.4238 -0.8004 40 1 5.7755 2.7043 0.8820 41 1 5.7672 2.7342 -0.9021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292024457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = -152.508556 kcal Electronic energy + Delta-G solvation = -21943.358269 eV Core-core repulsion = 18435.933219 eV Total energy + Delta-G solvation = -3507.425050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79319 -40.84053 -39.22282 -37.51578 -35.60323 -35.34980 -33.14282 -32.64919 -31.53776 -29.77944 -27.66002 -25.44875 -23.88471 -23.58748 -22.26315 -21.57417 -21.17506 -19.37570 -18.78955 -18.26048 -17.95848 -17.50877 -17.10376 -16.57292 -16.39695 -15.99431 -15.46641 -15.17705 -14.78733 -14.51018 -14.30309 -14.13361 -14.04863 -13.61305 -13.52785 -13.23705 -13.00723 -12.89382 -12.80780 -12.71532 -12.52019 -12.49107 -11.93459 -11.88041 -11.82004 -11.61504 -11.57518 -11.30641 -10.75477 -10.54977 -10.20902 -9.95728 -8.16682 -6.30567 0.85807 1.42944 1.47389 1.55034 1.57503 1.69737 2.20083 2.45306 2.86152 3.16272 3.39415 3.50320 3.98748 4.00915 4.04772 4.08207 4.13315 4.25933 4.33181 4.51733 4.52813 4.59275 4.65285 4.70260 4.74953 4.92549 4.93081 5.01546 5.10000 5.10898 5.16167 5.34264 5.46394 5.53488 5.65899 5.87468 6.19160 6.22967 6.59684 6.88281 7.04987 7.33958 7.39713 8.95660 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041439 B = 0.002514 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.528357 B =11134.255280 C =11399.298138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 O -0.363 6.363 4 C 0.659 3.341 5 O -0.613 6.613 6 N -0.600 5.600 7 C 0.103 3.897 8 C -0.120 4.120 9 C 0.136 3.864 10 H 0.094 0.906 11 N -0.707 5.707 12 C 0.515 3.485 13 O -0.584 6.584 14 C -0.120 4.120 15 C 0.040 3.960 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.264 1.264 22 H -0.289 1.289 23 H -0.261 1.261 24 C 0.115 3.885 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.421 0.579 35 H 0.110 0.890 36 H 0.104 0.896 37 H -0.020 1.020 38 H -0.016 1.016 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.013 -5.084 6.228 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.003 4.003 3 O -0.276 6.276 4 C 0.414 3.586 5 O -0.505 6.505 6 N -0.341 5.341 7 C -0.019 4.019 8 C -0.159 4.159 9 C 0.029 3.971 10 H 0.112 0.888 11 N -0.360 5.360 12 C 0.303 3.697 13 O -0.463 6.463 14 C -0.159 4.159 15 C 0.003 3.997 16 C -0.581 4.581 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.009 4.009 25 H 0.121 0.879 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.140 0.860 33 H 0.123 0.877 34 H 0.260 0.740 35 H 0.128 0.872 36 H 0.122 0.878 37 H -0.002 1.002 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -28.636 -5.625 5.268 29.655 hybrid contribution 1.298 -0.248 0.145 1.330 sum -27.338 -5.873 5.413 28.480 Atomic orbital electron populations 1.21834 0.89568 1.04610 1.03935 1.23283 0.96921 0.77588 1.02484 1.86244 1.20090 1.34660 1.86639 1.17711 0.81705 0.82870 0.76287 1.90991 1.61067 1.40584 1.57900 1.47063 1.08065 1.03759 1.75240 1.22635 0.95436 0.80676 1.03127 1.23133 0.89880 1.00286 1.02553 1.21872 0.88035 0.90646 0.96538 0.88835 1.45789 1.07546 1.69439 1.13276 1.21383 0.84582 0.75162 0.88545 1.90679 1.83895 1.52421 1.19348 1.21644 0.92153 1.03800 0.98343 1.18701 0.91961 0.94667 0.94405 1.21707 0.94583 1.45774 0.96027 0.90486 1.26156 1.02334 0.95568 0.96570 1.70175 1.22888 1.50340 1.14393 0.85373 0.77180 0.79402 0.78280 1.18829 1.21507 1.18529 1.22317 0.79400 0.97290 1.01900 0.87886 0.90876 0.91109 0.91807 0.91490 0.87561 0.89509 0.86020 0.87735 0.74028 0.87182 0.87831 1.00203 0.99736 0.92921 0.91377 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 10.29 71.98 0.74 -0.44 16 2 C 0.07 1.15 6.19 71.98 0.45 1.60 16 3 O -0.36 -7.54 9.75 -55.40 -0.54 -8.08 16 4 C 0.66 17.70 8.62 129.79 1.12 18.82 16 5 O -0.61 -21.46 16.46 19.83 0.33 -21.14 16 6 N -0.60 -13.41 3.33 -942.01 -3.13 -16.54 16 7 C 0.10 1.30 6.92 86.86 0.60 1.90 16 8 C -0.12 -1.27 6.71 31.99 0.21 -1.06 16 9 C 0.14 2.85 3.32 46.20 0.15 3.01 16 10 H 0.09 2.36 7.55 -2.39 -0.02 2.34 16 11 N -0.71 -16.53 5.10 -436.83 -2.23 -18.76 16 12 C 0.51 18.67 7.83 87.66 0.69 19.36 16 13 O -0.58 -27.65 15.63 -3.05 -0.05 -27.70 16 14 C -0.12 -4.59 5.64 29.85 0.17 -4.42 16 15 C 0.04 2.22 4.26 29.85 0.13 2.35 16 16 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 18 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 19 N -0.94 -59.76 13.29 21.45 0.28 -59.48 16 20 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 C 0.11 2.94 6.62 86.75 0.57 3.51 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 0.97 8.04 -2.39 -0.02 0.95 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.77 8.01 -2.39 -0.02 0.75 16 34 H 0.42 6.53 8.56 -92.71 -0.79 5.74 16 35 H 0.11 3.58 8.14 -2.39 -0.02 3.57 16 36 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 37 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 38 H -0.02 -0.98 8.10 -2.39 -0.02 -1.00 16 39 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.07 1.86 8.03 -2.39 -0.02 1.84 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -85.07 349.24 2.44 -82.63 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.23 Total: 8.66 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.53 Total: 14.08 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -5.08 Total: -94.78 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -0.26 Total: -56.92 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -85.07 2.44 -82.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292024457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.874 kcal (2) G-P(sol) polarization free energy of solvation -85.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds