Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48501 * 109.47109 * 239.99904 * 3 2 1 5 5 H 1.48498 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47029 * 120.00087 * 3 2 1 7 7 C 1.37875 * 119.99494 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53116 * 109.52529 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.28163 * 182.37589 * 10 9 7 12 12 N 1.46853 * 109.52263 * 59.18066 * 11 10 9 13 13 C 1.46892 * 110.99916 * 174.16401 * 12 11 10 14 14 C 1.50702 * 109.47030 * 170.00074 * 13 12 11 15 15 C 1.36670 * 120.11628 * 259.97366 * 14 13 12 16 16 C 1.38788 * 120.52797 * 180.02562 * 15 14 13 17 17 C 1.37789 * 120.66660 * 359.95958 * 16 15 14 18 18 C 1.39089 * 119.77888 * 0.04206 * 17 16 15 19 19 N 1.37694 * 133.51326 * 180.02562 * 18 17 16 20 20 H 0.97000 * 125.06246 * 359.93571 * 19 18 17 21 21 C 1.36837 * 109.87181 * 179.97438 * 19 18 17 22 22 C 1.34233 * 109.93996 * 0.26491 * 21 19 18 23 23 C 1.39586 * 120.11960 * 79.99729 * 14 13 12 24 24 C 1.46846 * 111.19409 * 298.25757 * 12 11 10 25 25 C 1.53041 * 109.52545 * 61.74659 * 24 12 11 26 26 H 0.97000 * 119.99602 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.52103 * 300.12352 * 9 7 2 28 28 H 1.08997 * 109.50336 * 62.43028 * 10 9 7 29 29 H 1.09000 * 109.53343 * 302.33682 * 10 9 7 30 30 H 1.08996 * 109.45981 * 299.16351 * 11 10 9 31 31 H 1.09002 * 109.45409 * 179.18750 * 11 10 9 32 32 H 1.08994 * 109.47479 * 49.99698 * 13 12 11 33 33 H 1.09000 * 109.47061 * 289.99522 * 13 12 11 34 34 H 1.08000 * 119.73253 * 0.02562 * 15 14 13 35 35 H 1.07996 * 119.66250 * 179.97438 * 16 15 14 36 36 H 1.07998 * 120.11182 * 180.02562 * 17 16 15 37 37 H 1.08002 * 125.02608 * 179.97438 * 21 19 18 38 38 H 1.07997 * 126.50049 * 179.70970 * 22 21 19 39 39 H 1.08999 * 109.46091 * 181.75694 * 24 12 11 40 40 H 1.08999 * 109.46731 * 301.72377 * 24 12 11 41 41 H 1.08994 * 109.50761 * 180.88002 * 25 24 12 42 42 H 1.08994 * 109.53596 * 60.77670 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9851 -0.0593 12 7 0.6531 -5.0195 -1.2759 13 6 0.0067 -6.3286 -1.4376 14 6 -1.0112 -6.2527 -2.5463 15 6 -2.3377 -6.1084 -2.2507 16 6 -3.2825 -6.0381 -3.2650 17 6 -2.9010 -6.1115 -4.5870 18 6 -1.5564 -6.2584 -4.9109 19 7 -0.8737 -6.3590 -6.1024 20 1 -1.2823 -6.3400 -6.9820 21 6 0.4667 -6.4905 -5.8609 22 6 0.6961 -6.4862 -4.5383 23 6 -0.6026 -6.3299 -3.8788 24 6 -0.3406 -3.9384 -1.2760 25 6 0.3751 -2.5858 -1.2525 26 1 -0.4849 0.8401 0.0004 27 1 0.6220 -2.5566 0.8889 28 1 2.8428 -3.6321 0.9113 29 1 2.8994 -3.5845 -0.8674 30 1 0.8314 -5.0704 0.8162 31 1 2.1803 -5.8160 -0.0740 32 1 -0.4891 -6.6065 -0.5076 33 1 0.7591 -7.0772 -1.6859 34 1 -2.6533 -6.0487 -1.2195 35 1 -4.3270 -5.9245 -3.0154 36 1 -3.6437 -6.0553 -5.3691 37 1 1.2270 -6.5885 -6.6217 38 1 1.6563 -6.5783 -4.0526 39 1 -0.9540 -4.0090 -2.1742 40 1 -0.9757 -4.0286 -0.3948 41 1 -0.3628 -1.7838 -1.2368 42 1 0.9996 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334891120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = 54.911365 kcal Electronic energy + Delta-G solvation = -22361.210944 eV Core-core repulsion = 19305.922311 eV Total energy + Delta-G solvation = -3055.288633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11713 -38.39182 -36.68994 -34.05938 -32.25961 -30.80246 -29.70449 -29.25440 -28.74438 -26.33080 -24.27988 -22.22874 -21.82155 -21.68614 -21.03729 -20.04212 -18.44864 -17.40027 -16.29398 -16.09634 -15.29168 -15.22342 -14.52273 -14.42190 -14.14650 -14.09294 -13.39695 -13.02145 -12.82923 -12.77511 -12.45454 -12.34343 -11.96430 -11.76966 -11.59263 -11.30848 -11.04938 -10.87370 -10.66099 -10.62707 -10.33691 -10.10225 -9.86380 -9.45657 -9.31555 -8.85173 -8.59967 -8.20762 -8.05926 -7.67551 -7.42441 -5.89154 -3.94271 1.25049 1.79577 2.88767 3.21809 3.37619 3.41830 3.44786 4.00128 4.51406 4.73116 4.81933 4.95182 5.12923 5.28493 5.36844 5.40912 5.52718 5.71296 5.76406 5.82596 5.86789 6.00242 6.02261 6.15060 6.25054 6.27972 6.37632 6.46122 6.62710 6.74253 6.76918 6.80554 6.83634 6.95890 6.99000 7.18516 7.29240 7.30972 7.57071 7.60773 7.73710 7.83233 7.94338 8.15861 8.27220 8.57590 9.09278 9.69455 11.16932 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.004296 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.224667 B = 6516.566013 C = 6649.330149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.525 5.525 13 C 0.092 3.908 14 C -0.020 4.020 15 C -0.146 4.146 16 C -0.095 4.095 17 C -0.139 4.139 18 C 0.092 3.908 19 N -0.601 5.601 20 H 0.411 0.589 21 C 0.035 3.965 22 C -0.180 4.180 23 C -0.089 4.089 24 C 0.058 3.942 25 C -0.102 4.102 26 H 0.259 0.741 27 H 0.019 0.981 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.166 0.834 38 H 0.147 0.853 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.090 0.910 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -15.207 -9.912 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.068 4.068 12 N -0.249 5.249 13 C -0.035 4.035 14 C -0.021 4.021 15 C -0.166 4.166 16 C -0.115 4.115 17 C -0.160 4.160 18 C -0.015 4.015 19 N -0.204 5.204 20 H 0.247 0.753 21 C -0.090 4.090 22 C -0.205 4.205 23 C -0.094 4.094 24 C -0.069 4.069 25 C -0.140 4.140 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.108 0.892 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.909 -15.001 -10.419 18.678 hybrid contribution -0.305 0.912 0.205 0.983 sum -4.214 -14.090 -10.214 17.905 Atomic orbital electron populations 1.69881 1.05843 1.26276 1.51130 1.24963 0.94814 0.98911 0.95310 0.86716 0.79629 0.83449 0.78520 1.20356 1.21422 1.20406 1.21183 0.92801 0.90756 1.50034 0.92880 1.18680 0.92702 0.91659 0.94012 1.21662 0.98677 0.93795 1.00161 1.22130 0.95814 0.99217 0.89605 1.62147 1.23395 1.01429 1.37974 1.21042 0.94768 0.93288 0.94413 1.18975 0.93707 0.96862 0.92510 1.20559 0.92431 1.04350 0.99221 1.20715 0.99198 0.99901 0.91650 1.19926 0.91877 1.07424 0.96778 1.18256 0.93475 1.04105 0.85619 1.41720 1.06279 1.65590 1.06858 0.75289 1.21754 0.84412 1.05228 0.97618 1.21725 0.96995 1.09704 0.92092 1.18935 0.92981 1.05565 0.91887 1.22304 0.93125 0.92736 0.98753 1.21632 1.00057 0.93201 0.99146 0.93136 0.96261 0.93306 0.92523 0.95898 0.92507 0.94818 0.90585 0.86371 0.85992 0.86734 0.81653 0.83554 0.92090 0.96345 0.89206 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 11.37 55.43 0.63 -25.42 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.35 8.56 -34.44 -0.29 -14.65 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.23 2.16 -91.65 -0.20 1.04 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.06 1.12 5.42 -3.83 -0.02 1.10 16 12 N -0.52 -9.81 4.80 -236.12 -1.13 -10.94 16 13 C 0.09 1.45 5.32 -4.98 -0.03 1.43 16 14 C -0.02 -0.31 3.69 -104.69 -0.39 -0.69 16 15 C -0.15 -2.11 8.55 -39.94 -0.34 -2.45 16 16 C -0.10 -1.23 10.01 -39.54 -0.40 -1.62 16 17 C -0.14 -1.75 10.08 -39.43 -0.40 -2.15 16 18 C 0.09 1.27 7.28 -83.98 -0.61 0.66 16 19 N -0.60 -6.55 6.07 -10.65 -0.06 -6.61 16 20 H 0.41 3.08 8.96 -40.82 -0.37 2.71 16 21 C 0.03 0.38 11.81 -16.73 -0.20 0.19 16 22 C -0.18 -2.48 10.94 -37.67 -0.41 -2.89 16 23 C -0.09 -1.36 6.16 -105.14 -0.65 -2.01 16 24 C 0.06 1.22 4.80 -3.83 -0.02 1.20 16 25 C -0.10 -2.54 5.13 -26.65 -0.14 -2.67 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.03 0.51 7.92 -51.93 -0.41 0.10 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.12 1.60 8.02 -52.49 -0.42 1.18 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.06 1.27 6.02 -51.93 -0.31 0.96 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 2.48 6.17 -51.93 -0.32 2.16 16 42 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -31.23 334.15 -11.32 -42.55 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.45 Total: 3.00 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -4.32 Total: -24.33 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.57 Total: -42.98 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.23 -11.32 -42.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334891120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.460 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds