Wall clock time and date at job start Tue Mar 31 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00140 * 2 1 4 4 H 1.48501 * 109.47109 * 239.99904 * 3 2 1 5 5 H 1.48498 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47029 * 120.00087 * 3 2 1 7 7 C 1.37875 * 119.99494 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00365 * 0.02562 * 7 2 1 10 10 C 1.53116 * 109.52529 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.28163 * 182.37589 * 10 9 7 12 12 N 1.46853 * 109.52263 * 59.18066 * 11 10 9 13 13 C 1.46892 * 110.99916 * 174.16401 * 12 11 10 14 14 C 1.50702 * 109.47030 * 170.00074 * 13 12 11 15 15 C 1.36670 * 120.11628 * 259.97366 * 14 13 12 16 16 C 1.38788 * 120.52797 * 180.02562 * 15 14 13 17 17 C 1.37789 * 120.66660 * 359.95958 * 16 15 14 18 18 C 1.39089 * 119.77888 * 0.04206 * 17 16 15 19 19 N 1.37694 * 133.51326 * 180.02562 * 18 17 16 20 20 H 0.97000 * 125.06246 * 359.93571 * 19 18 17 21 21 C 1.36837 * 109.87181 * 179.97438 * 19 18 17 22 22 C 1.34233 * 109.93996 * 0.26491 * 21 19 18 23 23 C 1.39586 * 120.11960 * 79.99729 * 14 13 12 24 24 C 1.46846 * 111.19409 * 298.25757 * 12 11 10 25 25 C 1.53041 * 109.52545 * 61.74659 * 24 12 11 26 26 H 0.97000 * 119.99602 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.52103 * 300.12352 * 9 7 2 28 28 H 1.08997 * 109.50336 * 62.43028 * 10 9 7 29 29 H 1.09000 * 109.53343 * 302.33682 * 10 9 7 30 30 H 1.08996 * 109.45981 * 299.16351 * 11 10 9 31 31 H 1.09002 * 109.45409 * 179.18750 * 11 10 9 32 32 H 1.08994 * 109.47479 * 49.99698 * 13 12 11 33 33 H 1.09000 * 109.47061 * 289.99522 * 13 12 11 34 34 H 1.08000 * 119.73253 * 0.02562 * 15 14 13 35 35 H 1.07996 * 119.66250 * 179.97438 * 16 15 14 36 36 H 1.07998 * 120.11182 * 180.02562 * 17 16 15 37 37 H 1.08002 * 125.02608 * 179.97438 * 21 19 18 38 38 H 1.07997 * 126.50049 * 179.70970 * 22 21 19 39 39 H 1.08999 * 109.46091 * 181.75694 * 24 12 11 40 40 H 1.08999 * 109.46731 * 301.72377 * 24 12 11 41 41 H 1.08994 * 109.50761 * 180.88002 * 25 24 12 42 42 H 1.08994 * 109.53596 * 60.77670 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9851 -0.0593 12 7 0.6531 -5.0195 -1.2759 13 6 0.0067 -6.3286 -1.4376 14 6 -1.0112 -6.2527 -2.5463 15 6 -2.3377 -6.1084 -2.2507 16 6 -3.2825 -6.0381 -3.2650 17 6 -2.9010 -6.1115 -4.5870 18 6 -1.5564 -6.2584 -4.9109 19 7 -0.8737 -6.3590 -6.1024 20 1 -1.2823 -6.3400 -6.9820 21 6 0.4667 -6.4905 -5.8609 22 6 0.6961 -6.4862 -4.5383 23 6 -0.6026 -6.3299 -3.8788 24 6 -0.3406 -3.9384 -1.2760 25 6 0.3751 -2.5858 -1.2525 26 1 -0.4849 0.8401 0.0004 27 1 0.6220 -2.5566 0.8889 28 1 2.8428 -3.6321 0.9113 29 1 2.8994 -3.5845 -0.8674 30 1 0.8314 -5.0704 0.8162 31 1 2.1803 -5.8160 -0.0740 32 1 -0.4891 -6.6065 -0.5076 33 1 0.7591 -7.0772 -1.6859 34 1 -2.6533 -6.0487 -1.2195 35 1 -4.3270 -5.9245 -3.0154 36 1 -3.6437 -6.0553 -5.3691 37 1 1.2270 -6.5885 -6.6217 38 1 1.6563 -6.5783 -4.0526 39 1 -0.9540 -4.0090 -2.1742 40 1 -0.9757 -4.0286 -0.3948 41 1 -0.3628 -1.7838 -1.2368 42 1 0.9996 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334891120.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:59 Heat of formation + Delta-G solvation = 36.830110 kcal Electronic energy + Delta-G solvation = -22361.995006 eV Core-core repulsion = 19305.922311 eV Total energy + Delta-G solvation = -3056.072695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.08327 -39.91036 -37.86105 -35.77777 -33.85144 -32.27764 -31.43971 -30.38376 -29.79497 -27.99240 -25.92005 -23.78937 -23.39349 -22.71571 -22.36995 -21.07527 -20.28541 -18.48480 -18.32395 -17.08184 -16.90526 -16.31270 -16.27175 -15.79375 -15.41412 -15.19542 -14.88101 -14.61031 -14.41919 -14.18425 -13.90793 -13.61871 -13.31879 -13.14016 -13.08176 -12.81706 -12.59192 -12.42529 -12.34439 -12.17613 -12.00444 -11.85669 -11.59053 -11.30644 -10.79589 -10.64057 -10.43361 -10.35459 -9.12901 -9.05323 -8.46998 -8.05817 -6.19525 0.24467 0.75943 1.41534 1.43463 1.50906 1.94917 2.37848 2.45070 2.87873 3.20471 3.33536 3.76305 4.10584 4.11672 4.25811 4.29588 4.34613 4.40697 4.46116 4.49792 4.57349 4.70001 4.74169 4.82178 4.88902 4.93719 5.00550 5.03155 5.12615 5.15867 5.26140 5.30265 5.36066 5.59525 5.61643 5.64314 5.77218 5.85403 5.95181 6.02297 6.05560 6.31018 6.33422 6.39905 6.42660 6.84002 6.92187 7.47967 8.98708 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.004296 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.224667 B = 6516.566013 C = 6649.330149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.045 3.955 10 C -0.098 4.098 11 C 0.065 3.935 12 N -0.529 5.529 13 C 0.098 3.902 14 C -0.046 4.046 15 C -0.156 4.156 16 C -0.107 4.107 17 C -0.135 4.135 18 C 0.073 3.927 19 N -0.589 5.589 20 H 0.429 0.571 21 C 0.058 3.942 22 C -0.222 4.222 23 C -0.114 4.114 24 C 0.079 3.921 25 C -0.091 4.091 26 H 0.259 0.741 27 H -0.013 1.013 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.021 0.979 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.207 0.793 38 H 0.144 0.856 39 H 0.062 0.938 40 H 0.009 0.991 41 H 0.057 0.943 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 -16.097 -11.490 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.136 4.136 11 C -0.063 4.063 12 N -0.254 5.254 13 C -0.029 4.029 14 C -0.047 4.047 15 C -0.176 4.176 16 C -0.126 4.126 17 C -0.156 4.156 18 C -0.034 4.034 19 N -0.194 5.194 20 H 0.268 0.732 21 C -0.068 4.068 22 C -0.246 4.246 23 C -0.119 4.119 24 C -0.049 4.049 25 C -0.129 4.129 26 H 0.068 0.932 27 H 0.005 0.995 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.223 0.777 38 H 0.161 0.839 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.075 0.925 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.583 -15.911 -12.013 20.256 hybrid contribution -0.425 1.161 0.627 1.386 sum -4.008 -14.750 -11.386 19.060 Atomic orbital electron populations 1.70032 1.07230 1.27047 1.51562 1.25766 0.95670 1.02413 0.94866 0.85683 0.78433 0.79136 0.78832 1.19731 1.20959 1.19533 1.21569 0.93006 0.92252 1.50320 0.93003 1.18652 0.93149 0.92783 0.92781 1.21526 0.97902 0.93908 1.00225 1.22087 0.96124 0.98469 0.89578 1.62062 1.23053 1.02311 1.37929 1.21044 0.95308 0.91490 0.95042 1.19030 0.94002 0.98955 0.92737 1.20744 0.92643 1.04376 0.99868 1.21024 1.00147 0.99828 0.91606 1.20295 0.92163 1.05698 0.97425 1.18506 0.93888 1.04691 0.86361 1.41775 1.06214 1.64366 1.07045 0.73199 1.22338 0.85000 1.01822 0.97611 1.21875 0.96592 1.12733 0.93444 1.19282 0.94324 1.05970 0.92343 1.21930 0.92948 0.91681 0.98336 1.21385 0.98974 0.94635 0.97952 0.93154 0.99463 0.92616 0.93055 0.96054 0.89151 0.94214 0.89214 0.86308 0.83656 0.83906 0.77673 0.83857 0.91987 0.97272 0.92469 0.95723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.15 11.37 21.45 0.24 -54.91 16 2 C 0.01 0.64 5.31 84.65 0.45 1.08 16 3 Si 0.95 45.00 29.54 68.60 2.03 47.02 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.53 -30.73 8.56 25.60 0.22 -30.51 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.04 2.38 2.16 -11.46 -0.02 2.36 16 10 C -0.10 -4.25 5.32 30.65 0.16 -4.09 16 11 C 0.06 2.36 5.42 86.32 0.47 2.83 16 12 N -0.53 -19.66 4.80 -900.94 -4.32 -23.98 16 13 C 0.10 3.02 5.32 85.56 0.46 3.48 16 14 C -0.05 -1.43 3.69 -19.91 -0.07 -1.51 16 15 C -0.16 -4.48 8.55 22.03 0.19 -4.29 16 16 C -0.11 -2.62 10.01 22.29 0.22 -2.40 16 17 C -0.14 -3.14 10.08 22.37 0.23 -2.92 16 18 C 0.07 1.89 7.28 39.03 0.28 2.17 16 19 N -0.59 -11.28 6.07 -187.60 -1.14 -12.42 16 20 H 0.43 5.02 8.96 -92.71 -0.83 4.19 16 21 C 0.06 1.13 11.81 83.00 0.98 2.11 16 22 C -0.22 -5.86 10.94 23.51 0.26 -5.60 16 23 C -0.11 -3.43 6.16 -20.20 -0.12 -3.55 16 24 C 0.08 3.39 4.80 86.33 0.41 3.80 16 25 C -0.09 -4.70 5.13 30.65 0.16 -4.54 16 26 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 27 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 2.72 8.12 -2.39 -0.02 2.70 16 32 H 0.04 1.17 7.92 -2.39 -0.02 1.15 16 33 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.12 3.24 8.02 -2.91 -0.02 3.22 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 39 H 0.06 2.65 6.02 -2.39 -0.01 2.64 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.06 3.30 6.17 -2.39 -0.01 3.29 16 42 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -69.18 334.15 1.25 -67.93 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.18 Total: 17.92 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 4.26 Total: -41.56 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -5.22 Total: -91.31 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -69.18 1.25 -67.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334891120.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.760 kcal (2) G-P(sol) polarization free energy of solvation -69.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds