Wall clock time and date at job start Tue Mar 31 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47114 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00159 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.61692 * 34.99716 * 12 11 10 14 14 C 1.53259 * 109.61515 * 274.64421 * 12 11 10 15 15 C 1.53143 * 109.41416 * 190.00716 * 14 12 11 16 16 C 1.53322 * 109.31943 * 70.06714 * 15 14 12 17 17 C 1.50770 * 108.57445 * 310.32649 * 16 15 14 18 18 C 1.44822 * 128.49077 * 196.41515 * 17 16 15 19 19 C 1.39822 * 132.73232 * 359.91399 * 18 17 16 20 20 C 1.37309 * 116.87395 * 180.02562 * 19 18 17 21 21 C 1.38541 * 122.09233 * 359.97030 * 20 19 18 22 22 C 1.38401 * 122.25002 * 0.02899 * 21 20 19 23 23 C 1.39344 * 116.92647 * 359.97438 * 22 21 20 24 24 N 1.36509 * 132.09577 * 179.97438 * 23 22 21 25 25 H 0.97003 * 125.10845 * 0.12350 * 24 23 22 26 26 C 1.35307 * 124.47227 * 16.24968 * 17 16 15 27 27 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 29 29 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 30 30 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 31 31 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 32 32 H 1.00907 * 110.99931 * 56.04711 * 11 10 9 33 33 H 1.08996 * 109.48567 * 309.99338 * 14 12 11 34 34 H 1.09004 * 109.47945 * 70.02914 * 14 12 11 35 35 H 1.09000 * 109.49426 * 190.01611 * 15 14 12 36 36 H 1.08996 * 109.50146 * 310.10921 * 15 14 12 37 37 H 1.09000 * 109.61867 * 70.04587 * 16 15 14 38 38 H 1.08994 * 109.61991 * 190.59647 * 16 15 14 39 39 H 1.07998 * 121.57069 * 359.97438 * 19 18 17 40 40 H 1.07995 * 118.95671 * 180.02562 * 20 19 18 41 41 H 1.08003 * 118.87427 * 180.02562 * 21 20 19 42 42 H 1.08002 * 121.53784 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5107 -4.9342 -0.0020 12 6 2.4351 -6.0759 -0.0024 13 1 3.3191 -5.8312 0.5866 14 6 2.8498 -6.4016 -1.4414 15 6 3.6062 -7.7330 -1.4642 16 6 2.6284 -8.8770 -1.1711 17 6 1.8359 -8.5272 0.0629 18 6 1.0440 -9.4011 0.9034 19 6 0.7671 -10.7707 0.8532 20 6 -0.0440 -11.2765 1.8389 21 6 -0.5689 -10.4780 2.8420 22 6 -0.3113 -9.1202 2.9159 23 6 0.5091 -8.5789 1.9283 24 7 0.9561 -7.3086 1.7047 25 1 0.7453 -6.5380 2.2549 26 6 1.7491 -7.2842 0.5905 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5575 0.8880 29 1 0.6246 -2.5563 -0.8919 30 1 2.8725 -3.6039 -0.8910 31 1 2.8713 -3.6047 0.8890 32 1 0.8746 -4.9842 -0.7837 33 1 1.9609 -6.4778 -2.0675 34 1 3.4957 -5.6101 -1.8216 35 1 4.0541 -7.8801 -2.4469 36 1 4.3887 -7.7200 -0.7056 37 1 1.9519 -9.0058 -2.0160 38 1 3.1842 -9.7988 -1.0000 39 1 1.1714 -11.4012 0.0751 40 1 -0.2795 -12.3305 1.8327 41 1 -1.2009 -10.9306 3.5919 42 1 -0.7270 -8.5083 3.7029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343801847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:39 Heat of formation + Delta-G solvation = 30.676344 kcal Electronic energy + Delta-G solvation = -21545.442619 eV Core-core repulsion = 18489.103077 eV Total energy + Delta-G solvation = -3056.339542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43826 -38.04040 -36.13905 -34.99952 -33.01662 -31.62675 -30.37423 -28.85746 -28.32888 -27.27637 -24.47131 -23.27340 -22.00775 -21.75330 -20.83557 -20.66935 -18.53040 -17.50657 -16.58356 -16.35733 -15.48790 -15.09754 -14.63757 -14.46559 -14.25459 -14.04285 -13.91386 -13.68151 -13.25579 -13.23654 -12.89111 -12.46866 -12.17975 -11.94037 -11.57436 -11.47133 -11.35738 -11.16339 -11.00491 -10.99493 -10.75613 -10.62699 -10.42234 -10.10874 -9.47942 -9.45278 -9.21491 -8.41612 -8.01410 -7.99346 -7.41249 -6.05414 -4.08543 1.13386 1.72441 2.75008 3.28158 3.30317 3.34718 3.37630 3.95828 4.36449 4.54732 4.68720 4.78877 4.88147 4.96148 5.04386 5.13734 5.24749 5.30751 5.34260 5.46365 5.49781 5.56092 5.59970 5.80391 5.81661 5.92490 6.01214 6.04388 6.07232 6.17976 6.25042 6.28469 6.31518 6.53990 6.65724 6.81809 6.85998 6.96059 7.28505 7.33141 7.63610 7.70268 7.72418 7.83114 7.99372 8.35853 8.98557 9.55783 11.05892 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.003330 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.471049 B = 8406.506694 C = 9320.290286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.689 5.689 12 C 0.144 3.856 13 H 0.090 0.910 14 C -0.141 4.141 15 C -0.115 4.115 16 C -0.039 4.039 17 C -0.186 4.186 18 C -0.098 4.098 19 C -0.072 4.072 20 C -0.155 4.155 21 C -0.110 4.110 22 C -0.128 4.128 23 C 0.094 3.906 24 N -0.565 5.565 25 H 0.422 0.578 26 C 0.106 3.894 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.014 0.986 30 H 0.021 0.979 31 H 0.058 0.942 32 H 0.342 0.658 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -21.256 0.869 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.319 5.319 12 C 0.033 3.967 13 H 0.108 0.892 14 C -0.181 4.181 15 C -0.153 4.153 16 C -0.077 4.077 17 C -0.193 4.193 18 C -0.103 4.103 19 C -0.091 4.091 20 C -0.175 4.175 21 C -0.129 4.129 22 C -0.149 4.149 23 C -0.016 4.016 24 N -0.164 5.164 25 H 0.260 0.740 26 C -0.005 4.005 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.900 -20.969 1.633 21.231 hybrid contribution 0.511 1.412 -0.545 1.597 sum 3.411 -19.557 1.088 19.882 Atomic orbital electron populations 1.69974 1.06050 1.26673 1.50477 1.25004 0.94848 0.99270 0.95219 0.86581 0.79827 0.83400 0.78110 1.20653 1.21172 1.19869 1.21150 0.92974 0.90945 1.51112 0.92729 1.19062 0.93975 0.90416 0.97709 1.22224 0.97065 0.88025 0.98893 1.60666 1.19176 1.01801 1.50261 1.20334 0.94245 0.87451 0.94704 0.89192 1.22264 1.01167 0.97927 0.96717 1.21563 0.97936 0.94183 1.01664 1.19929 0.96048 0.97881 0.93829 1.19947 1.06942 0.91754 1.00694 1.18901 1.01541 0.93436 0.96437 1.20542 0.97673 0.92690 0.98172 1.20567 1.00951 0.99523 0.96409 1.20727 1.00535 0.92866 0.98798 1.20415 1.00708 0.95248 0.98526 1.18456 1.00203 0.84762 0.98159 1.41358 1.41922 1.08272 1.24816 0.74016 1.20600 0.95741 0.95532 0.88586 0.92937 0.95791 0.96757 0.96103 0.92302 0.83910 0.91223 0.90907 0.91577 0.91721 0.91516 0.91492 0.85800 0.86932 0.86596 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.30 5.43 -3.83 -0.02 1.28 16 11 N -0.69 -11.45 6.25 -107.62 -0.67 -12.12 16 12 C 0.14 2.01 2.81 -68.55 -0.19 1.82 16 13 H 0.09 1.28 7.81 -51.93 -0.41 0.87 16 14 C -0.14 -1.71 5.20 -26.52 -0.14 -1.85 16 15 C -0.12 -1.19 5.92 -26.49 -0.16 -1.35 16 16 C -0.04 -0.43 6.28 -27.68 -0.17 -0.60 16 17 C -0.19 -2.53 6.13 -103.03 -0.63 -3.16 16 18 C -0.10 -1.37 6.27 -105.32 -0.66 -2.03 16 19 C -0.07 -0.86 10.26 -39.33 -0.40 -1.26 16 20 C -0.16 -1.68 9.89 -39.81 -0.39 -2.08 16 21 C -0.11 -1.20 9.93 -39.41 -0.39 -1.59 16 22 C -0.13 -1.55 10.29 -39.11 -0.40 -1.96 16 23 C 0.09 1.31 7.19 -83.99 -0.60 0.70 16 24 N -0.56 -7.93 6.02 -6.54 -0.04 -7.97 16 25 H 0.42 5.62 8.96 -40.82 -0.37 5.25 16 26 C 0.11 1.51 6.61 -81.25 -0.54 0.97 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.40 7.70 -51.93 -0.40 0.00 16 31 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 32 H 0.34 5.73 8.35 -39.29 -0.33 5.40 16 33 H 0.07 0.87 7.91 -51.93 -0.41 0.45 16 34 H 0.07 0.89 7.78 -51.93 -0.40 0.49 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -30.25 342.08 -11.60 -41.86 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.50 Total: 6.45 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -5.26 Total: -23.88 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.02 Total: -45.97 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.25 -11.60 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343801847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.535 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds