Wall clock time and date at job start Tue Mar 31 2020 06:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47114 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00159 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.61692 * 34.99716 * 12 11 10 14 14 C 1.53259 * 109.61515 * 274.64421 * 12 11 10 15 15 C 1.53143 * 109.41416 * 190.00716 * 14 12 11 16 16 C 1.53322 * 109.31943 * 70.06714 * 15 14 12 17 17 C 1.50770 * 108.57445 * 310.32649 * 16 15 14 18 18 C 1.44822 * 128.49077 * 196.41515 * 17 16 15 19 19 C 1.39822 * 132.73232 * 359.91399 * 18 17 16 20 20 C 1.37309 * 116.87395 * 180.02562 * 19 18 17 21 21 C 1.38541 * 122.09233 * 359.97030 * 20 19 18 22 22 C 1.38401 * 122.25002 * 0.02899 * 21 20 19 23 23 C 1.39344 * 116.92647 * 359.97438 * 22 21 20 24 24 N 1.36509 * 132.09577 * 179.97438 * 23 22 21 25 25 H 0.97003 * 125.10845 * 0.12350 * 24 23 22 26 26 C 1.35307 * 124.47227 * 16.24968 * 17 16 15 27 27 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 29 29 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 30 30 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 31 31 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 32 32 H 1.00907 * 110.99931 * 56.04711 * 11 10 9 33 33 H 1.08996 * 109.48567 * 309.99338 * 14 12 11 34 34 H 1.09004 * 109.47945 * 70.02914 * 14 12 11 35 35 H 1.09000 * 109.49426 * 190.01611 * 15 14 12 36 36 H 1.08996 * 109.50146 * 310.10921 * 15 14 12 37 37 H 1.09000 * 109.61867 * 70.04587 * 16 15 14 38 38 H 1.08994 * 109.61991 * 190.59647 * 16 15 14 39 39 H 1.07998 * 121.57069 * 359.97438 * 19 18 17 40 40 H 1.07995 * 118.95671 * 180.02562 * 20 19 18 41 41 H 1.08003 * 118.87427 * 180.02562 * 21 20 19 42 42 H 1.08002 * 121.53784 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5107 -4.9342 -0.0020 12 6 2.4351 -6.0759 -0.0024 13 1 3.3191 -5.8312 0.5866 14 6 2.8498 -6.4016 -1.4414 15 6 3.6062 -7.7330 -1.4642 16 6 2.6284 -8.8770 -1.1711 17 6 1.8359 -8.5272 0.0629 18 6 1.0440 -9.4011 0.9034 19 6 0.7671 -10.7707 0.8532 20 6 -0.0440 -11.2765 1.8389 21 6 -0.5689 -10.4780 2.8420 22 6 -0.3113 -9.1202 2.9159 23 6 0.5091 -8.5789 1.9283 24 7 0.9561 -7.3086 1.7047 25 1 0.7453 -6.5380 2.2549 26 6 1.7491 -7.2842 0.5905 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5575 0.8880 29 1 0.6246 -2.5563 -0.8919 30 1 2.8725 -3.6039 -0.8910 31 1 2.8713 -3.6047 0.8890 32 1 0.8746 -4.9842 -0.7837 33 1 1.9609 -6.4778 -2.0675 34 1 3.4957 -5.6101 -1.8216 35 1 4.0541 -7.8801 -2.4469 36 1 4.3887 -7.7200 -0.7056 37 1 1.9519 -9.0058 -2.0160 38 1 3.1842 -9.7988 -1.0000 39 1 1.1714 -11.4012 0.0751 40 1 -0.2795 -12.3305 1.8327 41 1 -1.2009 -10.9306 3.5919 42 1 -0.7270 -8.5083 3.7029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343801847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:39 Heat of formation + Delta-G solvation = 13.653973 kcal Electronic energy + Delta-G solvation = -21546.180765 eV Core-core repulsion = 18489.103077 eV Total energy + Delta-G solvation = -3057.077688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.41392 -39.09949 -37.21731 -36.27541 -34.90509 -32.73905 -31.77964 -30.03304 -29.27968 -28.59026 -26.11143 -24.52381 -22.92602 -22.70226 -22.54419 -21.77645 -19.50425 -18.60957 -18.41646 -17.53110 -16.59999 -16.48154 -16.23828 -15.78757 -15.23485 -15.13406 -14.90983 -14.80438 -14.48020 -14.32174 -14.16986 -13.88197 -13.53429 -13.24574 -12.96938 -12.85603 -12.52566 -12.41422 -12.36828 -12.27889 -12.01799 -11.88715 -11.62977 -11.53100 -11.38629 -11.15992 -10.58684 -10.39497 -9.38005 -8.97044 -8.37899 -8.22392 -6.33944 0.20535 0.80362 1.39390 1.40556 1.51634 1.73655 2.30872 2.38826 3.04242 3.11435 3.24345 3.70153 3.84038 3.93040 4.03710 4.13969 4.29006 4.30582 4.37661 4.46795 4.51406 4.56896 4.62589 4.68005 4.70329 4.90431 4.95701 5.00801 5.03848 5.15063 5.17601 5.23274 5.34648 5.39630 5.43691 5.62768 5.65598 5.74476 5.77120 5.91734 5.96391 6.08830 6.22153 6.33904 6.44570 6.70117 6.83613 7.35728 8.89569 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024632 B = 0.003330 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.471049 B = 8406.506694 C = 9320.290286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.033 3.967 10 C 0.087 3.913 11 N -0.692 5.692 12 C 0.149 3.851 13 H 0.087 0.913 14 C -0.137 4.137 15 C -0.108 4.108 16 C -0.038 4.038 17 C -0.186 4.186 18 C -0.126 4.126 19 C -0.077 4.077 20 C -0.158 4.158 21 C -0.108 4.108 22 C -0.145 4.145 23 C 0.071 3.929 24 N -0.572 5.572 25 H 0.419 0.581 26 C 0.081 3.919 27 H 0.263 0.737 28 H -0.008 1.008 29 H -0.010 1.010 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.341 0.659 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -22.748 0.531 23.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.005 4.005 10 C -0.041 4.041 11 N -0.322 5.322 12 C 0.039 3.961 13 H 0.105 0.895 14 C -0.176 4.176 15 C -0.146 4.146 16 C -0.076 4.076 17 C -0.193 4.193 18 C -0.130 4.130 19 C -0.096 4.096 20 C -0.177 4.177 21 C -0.127 4.127 22 C -0.166 4.166 23 C -0.038 4.038 24 N -0.171 5.171 25 H 0.257 0.743 26 C -0.030 4.030 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.106 -22.486 1.291 22.895 hybrid contribution 0.055 1.747 -0.388 1.791 sum 4.161 -20.739 0.903 21.172 Atomic orbital electron populations 1.70113 1.07851 1.27780 1.51487 1.25972 0.95738 1.03396 0.94665 0.85434 0.78655 0.78355 0.78524 1.19696 1.20884 1.18651 1.21607 0.93584 0.92158 1.50797 0.91984 1.18907 0.94290 0.92327 0.94959 1.21801 0.95536 0.87632 0.99164 1.60524 1.19689 1.01507 1.50431 1.20321 0.93426 0.86307 0.96084 0.89508 1.22210 1.01242 0.99193 0.94995 1.21535 0.97528 0.92644 1.02941 1.20016 0.96091 0.98677 0.92780 1.20349 1.06458 0.91390 1.01122 1.19247 1.02401 0.94545 0.96851 1.20888 0.97637 0.92076 0.98975 1.20957 1.00040 1.00979 0.95702 1.21130 1.00016 0.92385 0.99193 1.20724 1.00890 0.96219 0.98727 1.18850 1.01005 0.84797 0.99101 1.41409 1.42314 1.08440 1.24986 0.74335 1.20658 0.97092 0.95837 0.89372 0.92785 0.98926 0.99138 0.95378 0.92294 0.84084 0.91597 0.90936 0.89398 0.91620 0.90916 0.89912 0.83704 0.84118 0.83955 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.01 5.46 84.65 0.46 0.48 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.71 5.23 29.85 0.16 1.87 16 10 C 0.09 3.50 5.43 86.30 0.47 3.97 16 11 N -0.69 -23.62 6.25 -494.40 -3.09 -26.71 16 12 C 0.15 4.19 2.81 44.37 0.12 4.31 16 13 H 0.09 2.47 7.81 -2.39 -0.02 2.45 16 14 C -0.14 -3.20 5.20 30.73 0.16 -3.04 16 15 C -0.11 -2.03 5.92 30.75 0.18 -1.84 16 16 C -0.04 -0.76 6.28 29.98 0.19 -0.57 16 17 C -0.19 -4.91 6.13 -18.83 -0.12 -5.02 16 18 C -0.13 -3.40 6.27 -20.31 -0.13 -3.53 16 19 C -0.08 -1.69 10.26 22.43 0.23 -1.46 16 20 C -0.16 -3.03 9.89 22.12 0.22 -2.81 16 21 C -0.11 -2.15 9.93 22.38 0.22 -1.93 16 22 C -0.14 -3.43 10.29 22.58 0.23 -3.20 16 23 C 0.07 2.01 7.19 39.58 0.28 2.29 16 24 N -0.57 -16.58 6.02 -174.59 -1.05 -17.63 16 25 H 0.42 11.83 8.96 -92.71 -0.83 11.00 16 26 C 0.08 2.31 6.61 41.23 0.27 2.59 16 27 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.03 1.08 7.70 -2.39 -0.02 1.07 16 31 H 0.06 2.36 8.06 -2.38 -0.02 2.34 16 32 H 0.34 11.81 8.35 -89.69 -0.75 11.06 16 33 H 0.07 1.59 7.91 -2.39 -0.02 1.57 16 34 H 0.07 1.70 7.78 -2.38 -0.02 1.68 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.23 8.11 -2.39 -0.02 1.21 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -65.88 342.08 0.81 -65.08 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.56 Total: 28.06 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 3.19 Total: -38.24 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -3.85 Total: -100.87 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.88 0.81 -65.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343801847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.729 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds