Wall clock time and date at job start Tue Mar 31 2020 06:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47137 * 358.67819 * 3 2 1 5 5 N 1.46905 * 109.46991 * 181.11434 * 4 3 2 6 6 C 1.46902 * 110.99859 * 299.43370 * 5 4 3 7 7 C 1.50702 * 109.47058 * 294.03877 * 6 5 4 8 8 H 1.08000 * 119.99871 * 355.07487 * 7 6 5 9 9 C 1.37879 * 119.99590 * 175.08158 * 7 6 5 10 10 N 1.31507 * 120.00272 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99466 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47342 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.46776 * 119.99942 * 11 9 7 14 14 H 1.48504 * 109.47002 * 239.99405 * 11 9 7 15 15 C 1.46902 * 111.00115 * 63.39120 * 5 4 3 16 16 C 1.50697 * 109.47209 * 66.04684 * 15 5 4 17 17 C 1.38257 * 119.99790 * 269.72735 * 16 15 5 18 18 C 1.38222 * 119.99872 * 179.78887 * 17 16 15 19 19 C 1.38252 * 119.99796 * 0.46024 * 18 17 16 20 20 C 1.38215 * 119.99989 * 359.77246 * 19 18 17 21 21 C 1.50698 * 120.00008 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.49733 * 8.64101 * 21 20 19 23 23 C 1.52989 * 60.00005 * 252.50796 * 22 21 20 24 24 C 1.38209 * 120.00349 * 90.00084 * 16 15 5 25 25 H 1.08995 * 109.47250 * 238.67763 * 3 2 1 26 26 H 1.08994 * 109.47010 * 118.67772 * 3 2 1 27 27 H 1.08996 * 109.47358 * 61.10976 * 4 3 2 28 28 H 1.09001 * 109.47145 * 301.10952 * 4 3 2 29 29 H 1.08999 * 109.47013 * 54.03547 * 6 5 4 30 30 H 1.08993 * 109.46708 * 174.03681 * 6 5 4 31 31 H 0.97001 * 120.00066 * 179.97438 * 10 9 7 32 32 H 1.08999 * 109.46553 * 306.04468 * 15 5 4 33 33 H 1.08996 * 109.46755 * 186.04542 * 15 5 4 34 34 H 1.07998 * 120.00101 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.99606 * 180.24909 * 18 17 16 36 36 H 1.08005 * 119.99966 * 179.78996 * 19 18 17 37 37 H 1.08996 * 115.55103 * 154.34370 * 21 20 19 38 38 H 1.09004 * 117.50245 * 0.02562 * 22 21 20 39 39 H 1.09005 * 117.49895 * 145.02011 * 22 21 20 40 40 H 1.08999 * 117.50553 * 252.50923 * 23 22 21 41 41 H 1.09009 * 117.51745 * 107.48017 * 23 22 21 42 42 H 1.08007 * 119.99814 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4413 0.0333 5 7 4.5875 -1.4400 0.0602 6 6 5.1353 -0.7855 -1.1354 7 6 4.7980 -1.6038 -2.3551 8 1 4.3031 -2.5575 -2.2456 9 6 5.1213 -1.1349 -3.6108 10 7 5.7236 0.0265 -3.7441 11 14 4.7038 -2.1495 -5.1226 12 1 4.0340 -3.4074 -4.7051 13 1 3.7951 -1.3733 -6.0041 14 1 5.9509 -2.4746 -5.8605 15 6 5.0910 -0.8051 1.2855 16 6 4.7113 -1.6439 2.4785 17 6 3.5156 -1.4133 3.1331 18 6 3.1653 -2.1855 4.2247 19 6 4.0150 -3.1821 4.6676 20 6 5.2126 -3.4094 4.0161 21 6 6.1390 -4.4953 4.4992 22 6 5.6147 -5.4415 5.5813 23 6 6.6674 -4.3879 5.9310 24 6 5.5609 -2.6398 2.9216 25 1 2.9711 0.5350 0.8778 26 1 2.9711 0.4940 -0.9016 27 1 2.7719 -1.9701 -0.8545 28 1 2.7394 -1.9405 0.9249 29 1 4.7030 0.2101 -1.2349 30 1 6.2181 -0.7037 -1.0408 31 1 5.9514 0.3562 -4.6274 32 1 4.6539 0.1884 1.3858 33 1 6.1764 -0.7208 1.2312 34 1 2.8539 -0.6319 2.7898 35 1 2.2294 -2.0081 4.7336 36 1 3.7428 -3.7833 5.5227 37 1 6.8073 -4.9126 3.7461 38 1 4.5996 -5.2788 5.9434 39 1 5.9381 -6.4816 5.5400 40 1 7.6834 -4.7347 6.1199 41 1 6.3453 -3.5314 6.5234 42 1 6.4969 -2.8173 2.4126 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421345055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:09 Heat of formation + Delta-G solvation = 62.971038 kcal Electronic energy + Delta-G solvation = -21558.596224 eV Core-core repulsion = 18503.657085 eV Total energy + Delta-G solvation = -3054.939139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.79608 -39.22496 -37.62168 -37.10392 -34.70263 -32.77524 -31.60384 -31.44137 -28.81001 -26.59769 -25.25670 -24.50672 -23.35474 -22.79797 -21.59650 -20.26696 -18.82536 -18.21652 -17.68604 -17.02848 -16.63054 -16.33260 -15.98131 -15.55585 -15.43508 -15.18769 -14.78841 -14.68314 -14.34731 -13.89491 -13.62633 -13.53117 -13.38288 -13.11193 -13.00364 -12.86335 -12.67016 -12.57054 -12.46582 -12.29486 -12.04585 -11.77836 -11.74503 -11.54306 -11.38012 -11.25093 -11.08227 -10.53515 -9.59393 -9.31117 -8.87057 -8.13185 -6.19702 0.49911 0.59971 1.42263 1.46033 1.56231 1.75246 1.78524 2.44635 2.72673 3.01324 3.21121 3.23687 3.59645 3.69834 3.96564 4.07849 4.09996 4.15552 4.22559 4.26024 4.29186 4.34519 4.51327 4.56287 4.65547 4.78179 4.84312 4.89215 4.95493 5.03613 5.17933 5.20222 5.25111 5.29895 5.31699 5.40076 5.42440 5.67632 5.74755 5.78542 5.86628 6.14777 6.22108 6.36572 6.57670 6.69663 6.97039 7.49400 8.96431 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.004314 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.068908 B = 6488.540790 C = 7671.415761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.245 3.755 3 C -0.062 4.062 4 C 0.076 3.924 5 N -0.529 5.529 6 C 0.199 3.801 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.012 3.988 10 N -0.928 5.928 11 Si 0.949 3.051 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.085 3.915 16 C -0.070 4.070 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.131 4.131 20 C -0.058 4.058 21 C -0.136 4.136 22 C -0.170 4.170 23 C -0.162 4.162 24 C -0.110 4.110 25 H 0.129 0.871 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.084 0.916 29 H -0.001 1.001 30 H 0.006 0.994 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 -5.309 19.170 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.104 4.104 4 C -0.054 4.054 5 N -0.251 5.251 6 C 0.073 3.927 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.187 4.187 10 N -0.569 5.569 11 Si 0.776 3.224 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.208 1.208 15 C -0.042 4.042 16 C -0.070 4.070 17 C -0.147 4.147 18 C -0.138 4.138 19 C -0.149 4.149 20 C -0.058 4.058 21 C -0.154 4.154 22 C -0.206 4.206 23 C -0.199 4.199 24 C -0.129 4.129 25 H 0.147 0.853 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.016 0.984 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.174 -5.688 19.024 19.890 hybrid contribution 0.264 0.606 -1.449 1.592 sum -0.911 -5.082 17.575 18.317 Atomic orbital electron populations 1.81160 1.14059 1.10639 1.11083 1.29316 0.95161 0.91470 0.91281 1.20164 0.80684 1.02990 1.06530 1.21985 0.88159 0.92626 1.02675 1.62248 1.06068 1.54927 1.01845 1.19544 0.93942 0.92650 0.86521 1.21468 1.37629 1.04993 0.91186 0.92393 1.25627 0.95404 0.95976 1.01656 1.70033 1.42648 1.20229 1.23963 0.85630 0.77798 0.79141 0.79848 1.19260 1.20950 1.20814 1.21136 1.00471 0.95006 0.87630 1.19773 0.94931 0.96769 0.95553 1.21202 0.96178 1.00781 0.96507 1.21314 1.00099 0.95672 0.96739 1.21202 0.93970 0.98823 1.00924 1.19284 0.95075 0.96033 0.95426 1.21061 1.01996 0.99162 0.93177 1.23144 0.99682 0.96363 1.01450 1.23064 0.99701 1.01492 0.95657 1.20911 0.99990 0.95514 0.96499 0.85315 0.87461 0.91578 0.89810 0.98361 0.97552 0.92909 0.92592 0.90844 0.85503 0.84328 0.84522 0.87364 0.87874 0.87485 0.87439 0.88642 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.28 18.54 20.01 0.37 -16.91 16 2 C 0.24 7.61 15.43 89.44 1.38 8.99 16 3 C -0.06 -1.79 4.97 28.79 0.14 -1.64 16 4 C 0.08 2.49 4.76 86.30 0.41 2.90 16 5 N -0.53 -19.45 4.69 -905.36 -4.25 -23.70 16 6 C 0.20 9.15 4.49 85.56 0.38 9.53 16 7 C -0.51 -26.68 8.40 25.60 0.22 -26.47 16 8 H 0.06 3.04 7.29 -2.91 -0.02 3.01 16 9 C 0.01 0.63 5.46 84.66 0.46 1.09 16 10 N -0.93 -52.17 13.29 21.45 0.28 -51.89 16 11 Si 0.95 42.90 29.54 68.60 2.03 44.92 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 C 0.08 2.54 4.93 85.56 0.42 2.96 16 16 C -0.07 -1.88 4.88 -19.87 -0.10 -1.98 16 17 C -0.13 -3.03 7.92 22.27 0.18 -2.85 16 18 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 19 C -0.13 -2.73 9.30 22.27 0.21 -2.53 16 20 C -0.06 -1.35 5.61 -19.87 -0.11 -1.47 16 21 C -0.14 -2.62 6.04 -11.54 -0.07 -2.69 16 22 C -0.17 -2.50 9.86 30.59 0.30 -2.20 16 23 C -0.16 -2.44 10.16 30.59 0.31 -2.13 16 24 C -0.11 -2.98 9.39 22.27 0.21 -2.77 16 25 H 0.13 2.93 5.72 -2.39 -0.01 2.92 16 26 H 0.11 3.57 6.35 -2.39 -0.02 3.55 16 27 H 0.07 2.51 6.94 -2.39 -0.02 2.49 16 28 H 0.08 2.50 5.95 -2.39 -0.01 2.48 16 29 H 0.00 -0.06 6.04 -2.39 -0.01 -0.07 16 30 H 0.01 0.32 7.93 -2.39 -0.02 0.30 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.06 1.48 6.03 -2.39 -0.01 1.46 16 33 H 0.07 2.28 7.88 -2.39 -0.02 2.27 16 34 H 0.13 2.66 7.36 -2.91 -0.02 2.64 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.14 2.22 6.02 -2.91 -0.02 2.20 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.10 1.38 6.18 -2.39 -0.01 1.37 16 39 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -60.68 345.71 4.03 -56.65 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.02 Total: 14.48 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.57 Total: -23.55 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -3.59 Total: -92.50 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -60.68 4.03 -56.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421345055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.622 kcal (2) G-P(sol) polarization free energy of solvation -60.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds