Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 103.00218 * 2 1 4 4 H 1.09003 * 110.88199 * 57.42644 * 3 2 1 5 5 C 1.55154 * 111.00503 * 181.34947 * 3 2 1 6 6 C 1.54335 * 103.02103 * 153.38662 * 5 3 2 7 7 N 1.47022 * 107.26326 * 338.13990 * 6 5 3 8 8 C 1.34781 * 125.64548 * 178.85166 * 7 6 5 9 9 O 1.21588 * 119.99848 * 179.69025 * 8 7 6 10 10 N 1.34768 * 119.99965 * 359.69300 * 8 7 6 11 11 C 1.46506 * 120.00045 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47434 * 184.49774 * 11 10 8 13 13 C 1.50707 * 115.54762 * 298.17897 * 12 11 10 14 14 H 1.08003 * 119.99446 * 99.54665 * 13 12 11 15 15 C 1.37868 * 119.99940 * 279.54482 * 13 12 11 16 16 N 1.31515 * 120.00173 * 357.47799 * 15 13 12 17 17 Si 1.86800 * 120.00029 * 177.47872 * 15 13 12 18 18 H 1.48502 * 109.46864 * 90.00045 * 17 15 13 19 19 H 1.48505 * 109.47003 * 330.00195 * 17 15 13 20 20 H 1.48499 * 109.47332 * 210.00152 * 17 15 13 21 21 C 1.52991 * 117.51514 * 83.87824 * 12 11 10 22 22 C 1.52990 * 117.49759 * 152.50857 * 12 11 10 23 23 C 1.47420 * 108.70553 * 358.58857 * 7 6 5 24 24 H 1.09005 * 109.46680 * 59.99478 * 1 2 3 25 25 H 1.08993 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46822 * 300.00112 * 1 2 3 27 27 H 1.08997 * 110.72035 * 271.94447 * 5 3 2 28 28 H 1.09001 * 110.71892 * 35.03725 * 5 3 2 29 29 H 1.08996 * 109.99043 * 218.66788 * 6 5 3 30 30 H 1.09003 * 109.77915 * 97.49780 * 6 5 3 31 31 H 0.96999 * 120.00610 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.46970 * 64.49829 * 11 10 8 33 33 H 1.08994 * 109.46731 * 304.50067 * 11 10 8 34 34 H 0.97001 * 119.99875 * 5.88869 * 16 15 13 35 35 H 1.09009 * 117.49468 * 214.97264 * 21 12 11 36 36 H 1.08994 * 117.50602 * 359.97438 * 21 12 11 37 37 H 1.08997 * 117.50616 * 359.97438 * 22 12 11 38 38 H 1.09005 * 117.49866 * 144.99956 * 22 12 11 39 39 H 1.08997 * 110.37135 * 143.19266 * 23 7 6 40 40 H 1.09002 * 110.36691 * 265.51847 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7753 2.2694 0.8582 5 6 3.7582 1.9836 -0.0341 6 6 3.9000 3.3668 -0.7038 7 7 2.6655 3.6122 -1.4637 8 6 2.3881 4.7237 -2.1737 9 8 1.3328 4.8163 -2.7705 10 7 3.2804 5.7325 -2.2223 11 6 2.9786 6.9410 -2.9936 12 6 4.1916 7.8734 -2.9763 13 6 4.6074 8.3737 -1.6168 14 1 5.4304 7.9051 -1.0976 15 6 3.9373 9.4294 -1.0362 16 7 2.9678 10.0319 -1.6893 17 14 4.4065 10.0041 0.6781 18 1 5.4576 11.0485 0.5797 19 1 4.9239 8.8535 1.4616 20 1 3.2112 10.5670 1.3560 21 6 5.2966 7.6147 -4.0023 22 6 4.3705 8.8218 -4.1633 23 6 1.7841 2.4386 -1.3257 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.1682 1.9976 0.9757 28 1 4.2427 1.2138 -0.6348 29 1 4.7566 3.3685 -1.3777 30 1 4.0245 4.1351 0.0593 31 1 4.1225 5.6586 -1.7465 32 1 2.1226 7.4503 -2.5509 33 1 2.7459 6.6666 -4.0224 34 1 2.6665 9.6814 -2.5421 35 1 6.3245 7.8064 -3.6941 36 1 5.1599 6.7799 -4.6897 37 1 3.6244 8.7814 -4.9568 38 1 4.7891 9.8078 -3.9610 39 1 0.7418 2.7518 -1.2660 40 1 1.9284 1.7553 -2.1625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458729474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -9.535179 kcal Electronic energy + Delta-G solvation = -20552.975289 eV Core-core repulsion = 17494.502901 eV Total energy + Delta-G solvation = -3058.472388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93766 -37.70846 -36.73100 -33.45204 -31.95420 -31.44114 -29.76281 -28.62705 -26.27734 -24.86945 -23.25732 -21.59156 -21.34558 -19.68555 -19.47518 -17.97485 -17.08635 -16.60963 -15.76435 -15.40316 -14.83897 -14.54178 -14.00582 -13.89153 -13.79983 -13.71473 -13.38146 -13.24218 -13.04284 -12.76692 -12.55878 -12.31286 -11.87425 -11.68185 -11.41592 -11.21498 -10.99734 -10.80826 -10.49604 -10.24753 -10.18915 -9.86203 -9.57149 -8.76564 -8.68020 -8.57465 -8.31221 -8.07979 -8.00382 -6.40112 -4.18183 1.32839 2.18058 3.00286 3.37480 3.40175 3.55862 3.63172 4.04779 4.35734 4.43706 4.55089 4.72249 4.87389 4.88473 5.03482 5.05963 5.12342 5.27823 5.42533 5.47216 5.57857 5.61790 5.73995 5.81488 5.84224 6.12658 6.23355 6.28107 6.39010 6.52280 6.65203 6.84479 7.14879 7.17418 7.26630 7.43008 8.14791 8.30521 8.48973 8.79551 9.06393 9.58510 10.98239 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.004020 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.819157 B = 6962.991438 C = 7477.874211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.239 6.239 3 C -0.077 4.077 4 H 0.102 0.898 5 C -0.103 4.103 6 C 0.103 3.897 7 N -0.641 5.641 8 C 0.717 3.283 9 O -0.601 6.601 10 N -0.714 5.714 11 C 0.177 3.823 12 C 0.005 3.995 13 C -0.575 4.575 14 H 0.053 0.947 15 C 0.029 3.971 16 N -0.901 5.901 17 Si 1.069 2.931 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.285 1.285 21 C -0.193 4.193 22 C -0.172 4.172 23 C 0.137 3.863 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.399 0.601 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.277 0.723 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 -17.457 4.074 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.012 6.012 3 C -0.206 4.206 4 H 0.121 0.879 5 C -0.142 4.142 6 C -0.022 4.022 7 N -0.382 5.382 8 C 0.419 3.581 9 O -0.480 6.480 10 N -0.366 5.366 11 C 0.053 3.947 12 C 0.004 3.996 13 C -0.613 4.613 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.535 5.535 17 Si 0.897 3.103 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.211 1.211 21 C -0.230 4.230 22 C -0.210 4.210 23 C 0.011 3.989 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.234 0.766 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.246 -16.999 4.727 17.646 hybrid contribution -0.112 -0.138 -0.916 0.933 sum -0.358 -17.137 3.811 17.559 Atomic orbital electron populations 1.23431 0.94042 1.06530 1.05448 1.86755 1.07649 1.08968 1.97783 1.24441 1.00653 0.94196 1.01339 0.87932 1.22452 0.92470 0.96783 1.02468 1.21989 0.87969 0.96697 0.95529 1.47501 1.19644 1.17033 1.53979 1.15535 0.84017 0.79040 0.79502 1.90876 1.25521 1.81166 1.50454 1.45044 1.20486 1.16672 1.54402 1.20877 0.98447 0.82888 0.92478 1.19330 0.92365 0.96283 0.91646 1.21209 1.19084 1.20274 1.00684 0.92922 1.25754 0.94412 0.93516 1.04042 1.70683 1.26975 1.39172 1.16636 0.83551 0.76029 0.75825 0.74890 1.21456 1.21505 1.21056 1.22849 0.96453 0.99299 1.04412 1.22761 1.02129 0.95029 1.01099 1.22336 0.95261 0.86440 0.94892 0.90065 0.88032 0.90304 0.89022 0.89569 0.91036 0.90875 0.76635 0.92149 0.94208 0.91189 0.90110 0.91400 0.91319 0.89493 0.90474 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 10.64 101.05 1.08 0.14 16 2 S -0.24 -2.27 21.83 -107.50 -2.35 -4.61 16 3 C -0.08 -0.77 3.57 -24.58 -0.09 -0.86 16 4 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.10 -0.94 6.43 -24.89 -0.16 -1.10 16 6 C 0.10 1.20 6.15 -3.06 -0.02 1.18 16 7 N -0.64 -9.84 3.33 -176.24 -0.59 -10.43 16 8 C 0.72 14.36 8.49 -86.92 -0.74 13.62 16 9 O -0.60 -14.20 16.60 5.29 0.09 -14.11 16 10 N -0.71 -14.47 5.41 -65.22 -0.35 -14.82 16 11 C 0.18 4.06 5.43 -4.04 -0.02 4.03 16 12 C 0.00 0.11 0.99 -155.67 -0.15 -0.04 16 13 C -0.57 -14.83 8.42 -34.44 -0.29 -15.12 16 14 H 0.05 1.35 7.81 -52.48 -0.41 0.94 16 15 C 0.03 0.79 5.44 -17.82 -0.10 0.70 16 16 N -0.90 -25.93 13.53 55.43 0.75 -25.18 16 17 Si 1.07 24.08 29.90 -169.99 -5.08 19.00 16 18 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 C -0.19 -4.00 9.95 -26.74 -0.27 -4.26 16 22 C -0.17 -3.85 8.74 -26.74 -0.23 -4.08 16 23 C 0.14 1.76 6.27 -2.53 -0.02 1.74 16 24 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.75 8.03 -51.93 -0.42 0.34 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.40 7.52 7.20 -40.82 -0.29 7.23 16 32 H 0.06 1.56 7.81 -51.93 -0.41 1.16 16 33 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 34 H 0.28 7.94 6.17 -40.82 -0.25 7.69 16 35 H 0.08 1.65 8.14 -51.92 -0.42 1.23 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 39 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 40 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -31.02 343.21 -9.85 -40.86 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.48 Total: 8.17 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.01 Total: -4.05 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.19 Total: -50.42 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.08 Total: 19.00 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.35 Total: -4.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.02 -9.85 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.329 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds