Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 103.00218 * 2 1 4 4 H 1.09003 * 110.88199 * 57.42644 * 3 2 1 5 5 C 1.55154 * 111.00503 * 181.34947 * 3 2 1 6 6 C 1.54335 * 103.02103 * 153.38662 * 5 3 2 7 7 N 1.47022 * 107.26326 * 338.13990 * 6 5 3 8 8 C 1.34781 * 125.64548 * 178.85166 * 7 6 5 9 9 O 1.21588 * 119.99848 * 179.69025 * 8 7 6 10 10 N 1.34768 * 119.99965 * 359.69300 * 8 7 6 11 11 C 1.46506 * 120.00045 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47434 * 184.49774 * 11 10 8 13 13 C 1.50707 * 115.54762 * 298.17897 * 12 11 10 14 14 H 1.08003 * 119.99446 * 99.54665 * 13 12 11 15 15 C 1.37868 * 119.99940 * 279.54482 * 13 12 11 16 16 N 1.31515 * 120.00173 * 357.47799 * 15 13 12 17 17 Si 1.86800 * 120.00029 * 177.47872 * 15 13 12 18 18 H 1.48502 * 109.46864 * 90.00045 * 17 15 13 19 19 H 1.48505 * 109.47003 * 330.00195 * 17 15 13 20 20 H 1.48499 * 109.47332 * 210.00152 * 17 15 13 21 21 C 1.52991 * 117.51514 * 83.87824 * 12 11 10 22 22 C 1.52990 * 117.49759 * 152.50857 * 12 11 10 23 23 C 1.47420 * 108.70553 * 358.58857 * 7 6 5 24 24 H 1.09005 * 109.46680 * 59.99478 * 1 2 3 25 25 H 1.08993 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46822 * 300.00112 * 1 2 3 27 27 H 1.08997 * 110.72035 * 271.94447 * 5 3 2 28 28 H 1.09001 * 110.71892 * 35.03725 * 5 3 2 29 29 H 1.08996 * 109.99043 * 218.66788 * 6 5 3 30 30 H 1.09003 * 109.77915 * 97.49780 * 6 5 3 31 31 H 0.96999 * 120.00610 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.46970 * 64.49829 * 11 10 8 33 33 H 1.08994 * 109.46731 * 304.50067 * 11 10 8 34 34 H 0.97001 * 119.99875 * 5.88869 * 16 15 13 35 35 H 1.09009 * 117.49468 * 214.97264 * 21 12 11 36 36 H 1.08994 * 117.50602 * 359.97438 * 21 12 11 37 37 H 1.08997 * 117.50616 * 359.97438 * 22 12 11 38 38 H 1.09005 * 117.49866 * 144.99956 * 22 12 11 39 39 H 1.08997 * 110.37135 * 143.19266 * 23 7 6 40 40 H 1.09002 * 110.36691 * 265.51847 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7753 2.2694 0.8582 5 6 3.7582 1.9836 -0.0341 6 6 3.9000 3.3668 -0.7038 7 7 2.6655 3.6122 -1.4637 8 6 2.3881 4.7237 -2.1737 9 8 1.3328 4.8163 -2.7705 10 7 3.2804 5.7325 -2.2223 11 6 2.9786 6.9410 -2.9936 12 6 4.1916 7.8734 -2.9763 13 6 4.6074 8.3737 -1.6168 14 1 5.4304 7.9051 -1.0976 15 6 3.9373 9.4294 -1.0362 16 7 2.9678 10.0319 -1.6893 17 14 4.4065 10.0041 0.6781 18 1 5.4576 11.0485 0.5797 19 1 4.9239 8.8535 1.4616 20 1 3.2112 10.5670 1.3560 21 6 5.2966 7.6147 -4.0023 22 6 4.3705 8.8218 -4.1633 23 6 1.7841 2.4386 -1.3257 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.1682 1.9976 0.9757 28 1 4.2427 1.2138 -0.6348 29 1 4.7566 3.3685 -1.3777 30 1 4.0245 4.1351 0.0593 31 1 4.1225 5.6586 -1.7465 32 1 2.1226 7.4503 -2.5509 33 1 2.7459 6.6666 -4.0224 34 1 2.6665 9.6814 -2.5421 35 1 6.3245 7.8064 -3.6941 36 1 5.1599 6.7799 -4.6897 37 1 3.6244 8.7814 -4.9568 38 1 4.7891 9.8078 -3.9610 39 1 0.7418 2.7518 -1.2660 40 1 1.9284 1.7553 -2.1625 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458729474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -27.906421 kcal Electronic energy + Delta-G solvation = -20553.771926 eV Core-core repulsion = 17494.502901 eV Total energy + Delta-G solvation = -3059.269025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34517 -39.20248 -38.30625 -35.14140 -33.95641 -32.61682 -30.58454 -29.38418 -27.95952 -26.85695 -24.50261 -23.09281 -22.47307 -21.55212 -20.90682 -19.43725 -18.42046 -18.03343 -17.12723 -16.66891 -16.16200 -16.06512 -15.62249 -15.18705 -14.97324 -14.70052 -14.63148 -14.35826 -14.32424 -14.06239 -13.95312 -13.77157 -13.42104 -12.85994 -12.77930 -12.61607 -12.23522 -12.20483 -11.98538 -11.93658 -11.57116 -11.34102 -10.98617 -10.68936 -10.50925 -10.25492 -10.16681 -9.54691 -8.74584 -8.50573 -6.28576 0.57368 1.38739 1.56012 1.63398 1.74277 1.79370 2.06573 2.59359 2.92830 3.22828 3.27209 3.40410 3.50019 3.90637 4.03430 4.15802 4.18386 4.30855 4.34052 4.34573 4.44860 4.46612 4.54061 4.65784 4.71082 4.77404 4.82842 4.88286 4.89288 5.04219 5.05259 5.19666 5.32321 5.43581 5.56746 5.99860 6.13769 6.26428 6.69462 6.96995 7.49721 7.55711 8.87952 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.004020 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.819157 B = 6962.991438 C = 7477.874211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.247 6.247 3 C -0.068 4.068 4 H 0.105 0.895 5 C -0.091 4.091 6 C 0.096 3.904 7 N -0.637 5.637 8 C 0.712 3.288 9 O -0.644 6.644 10 N -0.710 5.710 11 C 0.194 3.806 12 C -0.018 4.018 13 C -0.573 4.573 14 H 0.055 0.945 15 C -0.020 4.020 16 N -0.934 5.934 17 Si 1.110 2.890 18 H -0.277 1.277 19 H -0.266 1.266 20 H -0.294 1.294 21 C -0.162 4.162 22 C -0.178 4.178 23 C 0.133 3.867 24 H 0.077 0.923 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.407 0.593 32 H 0.020 0.980 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -19.413 5.252 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.019 6.019 3 C -0.197 4.197 4 H 0.123 0.877 5 C -0.130 4.130 6 C -0.028 4.028 7 N -0.376 5.376 8 C 0.414 3.586 9 O -0.527 6.527 10 N -0.363 5.363 11 C 0.069 3.931 12 C -0.019 4.019 13 C -0.610 4.610 14 H 0.074 0.926 15 C -0.220 4.220 16 N -0.570 5.570 17 Si 0.934 3.066 18 H -0.203 1.203 19 H -0.190 1.190 20 H -0.221 1.221 21 C -0.199 4.199 22 C -0.216 4.216 23 C 0.008 3.992 24 H 0.096 0.904 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.133 0.867 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.243 0.757 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.348 -19.017 5.930 19.966 hybrid contribution -0.617 0.374 -1.311 1.497 sum 0.732 -18.643 4.619 19.221 Atomic orbital electron populations 1.23515 0.92392 1.07675 1.05662 1.86794 1.09542 1.07876 1.97699 1.24331 1.01375 0.94601 0.99419 0.87672 1.22464 0.91731 0.95129 1.03657 1.22270 0.86551 0.98427 0.95526 1.47524 1.21366 1.16029 1.52676 1.15694 0.83295 0.79935 0.79722 1.90837 1.27215 1.82264 1.52431 1.44844 1.20931 1.16090 1.54449 1.20480 0.96855 0.83462 0.92345 1.19320 0.93817 0.97350 0.91431 1.21493 1.18368 1.19572 1.01592 0.92640 1.27010 0.94032 0.94183 1.06805 1.70794 1.28878 1.40465 1.16832 0.83014 0.75688 0.76471 0.71465 1.20328 1.19037 1.22084 1.22860 0.95804 0.98622 1.02597 1.22697 1.03194 0.94659 1.01074 1.22505 0.94235 0.85635 0.96852 0.90409 0.86440 0.89579 0.86661 0.88663 0.89942 0.90763 0.75707 0.96167 0.94228 0.92476 0.89374 0.89155 0.90297 0.91441 0.92008 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 10.64 113.37 1.21 -0.40 16 2 S -0.25 -4.13 21.83 -56.49 -1.23 -5.37 16 3 C -0.07 -1.22 3.57 31.98 0.11 -1.11 16 4 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 5 C -0.09 -1.39 6.43 31.79 0.20 -1.19 16 6 C 0.10 2.02 6.15 86.73 0.53 2.56 16 7 N -0.64 -19.01 3.33 -829.75 -2.76 -21.77 16 8 C 0.71 28.63 8.49 179.06 1.52 30.15 16 9 O -0.64 -31.25 16.60 -3.99 -0.07 -31.32 16 10 N -0.71 -28.68 5.41 -478.53 -2.59 -31.27 16 11 C 0.19 9.02 5.43 86.38 0.47 9.49 16 12 C -0.02 -0.85 0.99 -52.93 -0.05 -0.90 16 13 C -0.57 -29.27 8.42 25.60 0.22 -29.05 16 14 H 0.06 2.75 7.81 -2.91 -0.02 2.73 16 15 C -0.02 -1.08 5.44 84.65 0.46 -0.62 16 16 N -0.93 -54.99 13.53 21.44 0.29 -54.70 16 17 Si 1.11 48.04 29.90 68.60 2.05 50.09 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 21 C -0.16 -6.40 9.95 30.59 0.30 -6.09 16 22 C -0.18 -7.94 8.74 30.59 0.27 -7.68 16 23 C 0.13 3.31 6.27 86.86 0.54 3.85 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.34 8.03 -2.39 -0.02 1.32 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.41 14.92 7.20 -92.71 -0.67 14.25 16 32 H 0.02 1.09 7.81 -2.39 -0.02 1.07 16 33 H 0.04 1.82 8.11 -2.39 -0.02 1.80 16 34 H 0.26 15.77 6.17 -92.71 -0.57 15.20 16 35 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 36 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.07 3.25 8.14 -2.38 -0.02 3.24 16 39 H 0.06 1.72 8.04 -2.39 -0.02 1.70 16 40 H 0.08 1.88 8.03 -2.39 -0.02 1.86 16 Total: -1.00 -67.79 343.21 2.03 -65.76 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.55 Total: 29.58 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 5.79 Total: -1.00 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -5.06 Total: -107.75 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.07 Total: -31.32 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.05 Total: 50.09 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -1.23 Total: -5.37 kcal Total: -67.79 2.03 -65.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.852 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds