Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81394 * 103.00223 * 2 1 4 4 H 1.09001 * 110.89022 * 308.88162 * 3 2 1 5 5 C 1.55160 * 111.00492 * 184.99765 * 3 2 1 6 6 C 1.54322 * 102.94320 * 206.38830 * 5 3 2 7 7 N 1.47019 * 107.27021 * 22.19403 * 6 5 3 8 8 C 1.34779 * 125.64501 * 181.01852 * 7 6 5 9 9 O 1.21583 * 119.99820 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00031 * 0.02995 * 8 7 6 11 11 C 1.46504 * 119.99875 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47037 * 184.67244 * 11 10 8 13 13 C 1.50700 * 115.54706 * 297.93721 * 12 11 10 14 14 H 1.07999 * 120.00014 * 95.21389 * 13 12 11 15 15 C 1.37875 * 119.99852 * 275.21060 * 13 12 11 16 16 N 1.31514 * 120.00316 * 7.13875 * 15 13 12 17 17 Si 1.86800 * 120.00030 * 187.13381 * 15 13 12 18 18 H 1.48504 * 109.47282 * 270.00697 * 17 15 13 19 19 H 1.48500 * 109.47595 * 150.00197 * 17 15 13 20 20 H 1.48507 * 109.46991 * 30.00248 * 17 15 13 21 21 C 1.52999 * 117.49861 * 83.60955 * 12 11 10 22 22 C 1.52995 * 117.49868 * 152.27141 * 12 11 10 23 23 C 1.47420 * 108.70644 * 1.28652 * 7 6 5 24 24 H 1.08994 * 109.47538 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46940 * 300.00201 * 1 2 3 26 26 H 1.09002 * 109.46936 * 59.99444 * 1 2 3 27 27 H 1.09003 * 110.71374 * 88.02160 * 5 3 2 28 28 H 1.09001 * 110.72224 * 324.75620 * 5 3 2 29 29 H 1.08999 * 109.88157 * 262.77773 * 6 5 3 30 30 H 1.08999 * 109.87879 * 141.61381 * 6 5 3 31 31 H 0.96997 * 119.99846 * 359.97438 * 10 8 7 32 32 H 1.08993 * 109.46810 * 64.66767 * 11 10 8 33 33 H 1.09001 * 109.47129 * 304.67162 * 11 10 8 34 34 H 0.96994 * 119.99714 * 355.39876 * 16 15 13 35 35 H 1.09004 * 117.49476 * 215.00603 * 21 12 11 36 36 H 1.08999 * 117.49907 * 0.02562 * 21 12 11 37 37 H 1.08999 * 117.49825 * 359.96961 * 22 12 11 38 38 H 1.08998 * 117.49970 * 144.97482 * 22 12 11 39 39 H 1.09002 * 110.36687 * 94.48059 * 23 7 6 40 40 H 1.08994 * 110.36956 * 216.80649 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.6868 2.2900 -0.7927 5 6 3.7533 1.9847 -0.1262 6 6 3.9653 3.3537 0.5537 7 7 2.8230 3.5766 1.4520 8 6 2.6252 4.6701 2.2146 9 8 1.6402 4.7469 2.9233 10 7 3.5191 5.6785 2.1915 11 6 3.3037 6.8674 3.0201 12 6 4.3925 7.9004 2.7227 13 6 5.8020 7.4665 3.0327 14 1 6.4217 7.0476 2.2537 15 6 6.3004 7.6046 4.3108 16 7 5.5065 7.9818 5.2890 17 14 8.1033 7.2556 4.6529 18 1 8.2715 5.8237 5.0089 19 1 8.5665 8.1036 5.7806 20 1 8.9054 7.5619 3.4413 21 6 4.1849 8.8182 1.5163 22 6 4.0443 9.3749 2.9353 23 6 1.9332 2.4031 1.3853 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 4.0521 2.0238 -1.1737 28 1 4.2986 1.2029 0.4025 29 1 4.0030 4.1401 -0.2002 30 1 4.8918 3.3429 1.1278 31 1 4.3050 5.6171 1.6263 32 1 3.3450 6.5887 4.0730 33 1 2.3264 7.2947 2.7954 34 1 4.5873 8.2273 5.1004 35 1 5.0679 9.1082 0.9468 36 1 3.2725 8.6864 0.9348 37 1 3.0394 9.6092 3.2865 38 1 4.8346 10.0312 3.2996 39 1 2.1707 1.7010 2.1845 40 1 0.8904 2.7136 1.4495 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458729476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -9.188378 kcal Electronic energy + Delta-G solvation = -20507.234847 eV Core-core repulsion = 17448.777498 eV Total energy + Delta-G solvation = -3058.457350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.92869 -37.70054 -36.72794 -33.44757 -31.94003 -31.43560 -29.71382 -28.67989 -26.27023 -24.86216 -23.25629 -21.59538 -21.36016 -19.68194 -19.46767 -17.95985 -17.07694 -16.60413 -15.78848 -15.39934 -14.82629 -14.47246 -14.15616 -13.82042 -13.78800 -13.71352 -13.48576 -13.13059 -13.01515 -12.77426 -12.60978 -12.29643 -11.85395 -11.68651 -11.40926 -11.23638 -10.94282 -10.83256 -10.50804 -10.25612 -10.17284 -9.85940 -9.61752 -8.75722 -8.58746 -8.51182 -8.40119 -8.06291 -8.00753 -6.40913 -4.16975 1.31723 2.18002 3.00541 3.38862 3.41901 3.57085 3.64638 4.03731 4.35825 4.44776 4.55279 4.69800 4.84712 4.86770 5.02640 5.05333 5.11854 5.27977 5.40725 5.46322 5.58354 5.62576 5.77094 5.81701 5.83968 6.13131 6.22402 6.28503 6.39358 6.51723 6.65431 6.83856 7.15550 7.18239 7.26557 7.43561 8.15406 8.31695 8.49562 8.80279 9.07237 9.59384 10.98599 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.003863 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.752362 B = 7246.570703 C = 7762.722016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.237 6.237 3 C -0.076 4.076 4 H 0.101 0.899 5 C -0.103 4.103 6 C 0.103 3.897 7 N -0.641 5.641 8 C 0.717 3.283 9 O -0.601 6.601 10 N -0.714 5.714 11 C 0.177 3.823 12 C 0.006 3.994 13 C -0.577 4.577 14 H 0.052 0.948 15 C 0.030 3.970 16 N -0.899 5.899 17 Si 1.068 2.932 18 H -0.288 1.288 19 H -0.284 1.284 20 H -0.288 1.288 21 C -0.194 4.194 22 C -0.171 4.171 23 C 0.137 3.863 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.399 0.601 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.276 0.724 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 -12.518 -12.648 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.010 6.010 3 C -0.206 4.206 4 H 0.119 0.881 5 C -0.142 4.142 6 C -0.022 4.022 7 N -0.382 5.382 8 C 0.419 3.581 9 O -0.480 6.480 10 N -0.366 5.366 11 C 0.053 3.947 12 C 0.005 3.995 13 C -0.614 4.614 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.533 5.533 17 Si 0.897 3.103 18 H -0.215 1.215 19 H -0.210 1.210 20 H -0.215 1.215 21 C -0.231 4.231 22 C -0.209 4.209 23 C 0.011 3.989 24 H 0.120 0.880 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.426 -13.319 -10.839 17.734 hybrid contribution -1.637 1.123 -1.537 2.510 sum -6.063 -12.197 -12.376 18.403 Atomic orbital electron populations 1.23430 0.94168 1.06548 1.05330 1.86812 1.07489 1.08958 1.97713 1.24476 1.00964 0.94326 1.00832 0.88073 1.22461 0.92424 0.97032 1.02280 1.21983 0.90367 0.96681 0.93155 1.47507 1.25616 1.18123 1.46958 1.15539 0.83528 0.79073 0.79960 1.90875 1.31036 1.80786 1.45313 1.45038 1.25218 1.18131 1.48218 1.20905 0.96129 0.83725 0.93958 1.19329 0.95349 0.87495 0.97364 1.21178 0.95336 1.46967 0.97969 0.92929 1.25764 1.05551 0.94172 0.92231 1.70698 1.08729 1.40467 1.33431 0.83553 0.74445 0.76687 0.75631 1.21495 1.20968 1.21463 1.22893 1.00548 1.08529 0.91135 1.22747 1.00210 0.99323 0.98655 1.22394 0.95289 0.86670 0.94523 0.88017 0.90088 0.90401 0.89075 0.89470 0.91273 0.90695 0.76682 0.92072 0.94327 0.91209 0.90068 0.91456 0.91263 0.89513 0.90592 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 10.76 101.05 1.09 0.18 16 2 S -0.24 -2.25 21.82 -107.50 -2.35 -4.59 16 3 C -0.08 -0.75 3.55 -24.46 -0.09 -0.84 16 4 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 5 C -0.10 -0.94 6.43 -24.90 -0.16 -1.10 16 6 C 0.10 1.20 6.15 -3.07 -0.02 1.19 16 7 N -0.64 -9.88 3.32 -176.11 -0.59 -10.47 16 8 C 0.72 14.43 8.49 -86.91 -0.74 13.69 16 9 O -0.60 -14.27 16.60 5.29 0.09 -14.18 16 10 N -0.71 -14.52 5.42 -65.22 -0.35 -14.88 16 11 C 0.18 4.07 5.43 -4.04 -0.02 4.04 16 12 C 0.01 0.13 0.99 -155.66 -0.15 -0.02 16 13 C -0.58 -14.92 8.44 -34.44 -0.29 -15.21 16 14 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 15 C 0.03 0.80 5.39 -17.82 -0.10 0.70 16 16 N -0.90 -25.96 13.57 55.43 0.75 -25.20 16 17 Si 1.07 24.14 29.91 -169.99 -5.08 19.06 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.19 -4.00 9.96 -26.69 -0.27 -4.27 16 22 C -0.17 -3.81 8.74 -26.69 -0.23 -4.05 16 23 C 0.14 1.78 6.39 -2.41 -0.02 1.76 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.40 7.53 7.21 -40.82 -0.29 7.24 16 32 H 0.06 1.60 7.82 -51.93 -0.41 1.19 16 33 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 34 H 0.28 7.95 6.19 -40.82 -0.25 7.70 16 35 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 40 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -31.20 343.47 -9.83 -41.03 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.48 Total: 7.98 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.99 Total: -3.92 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.19 Total: -50.55 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.09 Total: -14.18 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.08 Total: 19.06 kcal Atomic # 16 Polarization: -2.25 SS G_CDS: -2.35 Total: -4.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.20 -9.83 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.840 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds