Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81394 * 103.00223 * 2 1 4 4 H 1.09001 * 110.89022 * 308.88162 * 3 2 1 5 5 C 1.55160 * 111.00492 * 184.99765 * 3 2 1 6 6 C 1.54322 * 102.94320 * 206.38830 * 5 3 2 7 7 N 1.47019 * 107.27021 * 22.19403 * 6 5 3 8 8 C 1.34779 * 125.64501 * 181.01852 * 7 6 5 9 9 O 1.21583 * 119.99820 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00031 * 0.02995 * 8 7 6 11 11 C 1.46504 * 119.99875 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47037 * 184.67244 * 11 10 8 13 13 C 1.50700 * 115.54706 * 297.93721 * 12 11 10 14 14 H 1.07999 * 120.00014 * 95.21389 * 13 12 11 15 15 C 1.37875 * 119.99852 * 275.21060 * 13 12 11 16 16 N 1.31514 * 120.00316 * 7.13875 * 15 13 12 17 17 Si 1.86800 * 120.00030 * 187.13381 * 15 13 12 18 18 H 1.48504 * 109.47282 * 270.00697 * 17 15 13 19 19 H 1.48500 * 109.47595 * 150.00197 * 17 15 13 20 20 H 1.48507 * 109.46991 * 30.00248 * 17 15 13 21 21 C 1.52999 * 117.49861 * 83.60955 * 12 11 10 22 22 C 1.52995 * 117.49868 * 152.27141 * 12 11 10 23 23 C 1.47420 * 108.70644 * 1.28652 * 7 6 5 24 24 H 1.08994 * 109.47538 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46940 * 300.00201 * 1 2 3 26 26 H 1.09002 * 109.46936 * 59.99444 * 1 2 3 27 27 H 1.09003 * 110.71374 * 88.02160 * 5 3 2 28 28 H 1.09001 * 110.72224 * 324.75620 * 5 3 2 29 29 H 1.08999 * 109.88157 * 262.77773 * 6 5 3 30 30 H 1.08999 * 109.87879 * 141.61381 * 6 5 3 31 31 H 0.96997 * 119.99846 * 359.97438 * 10 8 7 32 32 H 1.08993 * 109.46810 * 64.66767 * 11 10 8 33 33 H 1.09001 * 109.47129 * 304.67162 * 11 10 8 34 34 H 0.96994 * 119.99714 * 355.39876 * 16 15 13 35 35 H 1.09004 * 117.49476 * 215.00603 * 21 12 11 36 36 H 1.08999 * 117.49907 * 0.02562 * 21 12 11 37 37 H 1.08999 * 117.49825 * 359.96961 * 22 12 11 38 38 H 1.08998 * 117.49970 * 144.97482 * 22 12 11 39 39 H 1.09002 * 110.36687 * 94.48059 * 23 7 6 40 40 H 1.08994 * 110.36956 * 216.80649 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.6868 2.2900 -0.7927 5 6 3.7533 1.9847 -0.1262 6 6 3.9653 3.3537 0.5537 7 7 2.8230 3.5766 1.4520 8 6 2.6252 4.6701 2.2146 9 8 1.6402 4.7469 2.9233 10 7 3.5191 5.6785 2.1915 11 6 3.3037 6.8674 3.0201 12 6 4.3925 7.9004 2.7227 13 6 5.8020 7.4665 3.0327 14 1 6.4217 7.0476 2.2537 15 6 6.3004 7.6046 4.3108 16 7 5.5065 7.9818 5.2890 17 14 8.1033 7.2556 4.6529 18 1 8.2715 5.8237 5.0089 19 1 8.5665 8.1036 5.7806 20 1 8.9054 7.5619 3.4413 21 6 4.1849 8.8182 1.5163 22 6 4.0443 9.3749 2.9353 23 6 1.9332 2.4031 1.3853 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 4.0521 2.0238 -1.1737 28 1 4.2986 1.2029 0.4025 29 1 4.0030 4.1401 -0.2002 30 1 4.8918 3.3429 1.1278 31 1 4.3050 5.6171 1.6263 32 1 3.3450 6.5887 4.0730 33 1 2.3264 7.2947 2.7954 34 1 4.5873 8.2273 5.1004 35 1 5.0679 9.1082 0.9468 36 1 3.2725 8.6864 0.9348 37 1 3.0394 9.6092 3.2865 38 1 4.8346 10.0312 3.2996 39 1 2.1707 1.7010 2.1845 40 1 0.8904 2.7136 1.4495 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458729476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -27.799836 kcal Electronic energy + Delta-G solvation = -20508.041901 eV Core-core repulsion = 17448.777498 eV Total energy + Delta-G solvation = -3059.264403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34307 -39.19611 -38.30351 -35.14508 -33.94454 -32.61122 -30.52692 -29.42443 -27.95211 -26.85663 -24.50615 -23.09752 -22.47259 -21.55211 -20.90591 -19.42612 -18.41171 -18.03746 -17.13018 -16.65633 -16.25211 -15.93814 -15.61868 -15.31991 -14.82675 -14.70651 -14.63495 -14.49002 -14.24669 -14.00686 -13.95323 -13.82134 -13.41277 -12.82170 -12.75074 -12.64255 -12.23491 -12.19476 -12.00975 -11.92253 -11.58976 -11.38732 -10.97672 -10.58022 -10.44395 -10.35276 -10.16293 -9.54537 -8.74771 -8.52092 -6.27876 0.57614 1.40865 1.56607 1.63908 1.73040 1.80186 2.07772 2.59681 2.92950 3.23202 3.25423 3.40730 3.50673 3.90094 4.03835 4.16390 4.17622 4.31790 4.34604 4.35569 4.44095 4.47149 4.53459 4.65784 4.73139 4.76851 4.82939 4.88309 4.89717 5.04087 5.05558 5.19734 5.33576 5.44025 5.56593 5.99953 6.14008 6.26803 6.69840 6.96929 7.49703 7.55977 8.87720 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.003863 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.752362 B = 7246.570703 C = 7762.722016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.063 4.063 4 H 0.113 0.887 5 C -0.092 4.092 6 C 0.096 3.904 7 N -0.637 5.637 8 C 0.712 3.288 9 O -0.645 6.645 10 N -0.710 5.710 11 C 0.193 3.807 12 C -0.019 4.019 13 C -0.575 4.575 14 H 0.055 0.945 15 C -0.020 4.020 16 N -0.933 5.933 17 Si 1.111 2.889 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.266 1.266 21 C -0.162 4.162 22 C -0.177 4.177 23 C 0.132 3.868 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.407 0.593 32 H 0.019 0.981 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 -13.634 -15.223 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.027 6.027 3 C -0.192 4.192 4 H 0.131 0.869 5 C -0.131 4.131 6 C -0.028 4.028 7 N -0.376 5.376 8 C 0.413 3.587 9 O -0.528 6.528 10 N -0.363 5.363 11 C 0.068 3.932 12 C -0.019 4.019 13 C -0.613 4.613 14 H 0.073 0.927 15 C -0.221 4.221 16 N -0.568 5.568 17 Si 0.935 3.065 18 H -0.208 1.208 19 H -0.217 1.217 20 H -0.191 1.191 21 C -0.199 4.199 22 C -0.215 4.215 23 C 0.007 3.993 24 H 0.134 0.866 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.138 0.862 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.243 0.757 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.770 -14.479 -13.483 20.140 hybrid contribution -1.904 1.404 -0.773 2.489 sum -5.674 -13.075 -14.256 20.159 Atomic orbital electron populations 1.23510 0.92126 1.07657 1.05750 1.86902 1.09825 1.08313 1.97628 1.24356 1.01663 0.94527 0.98679 0.86918 1.22473 0.91774 0.95178 1.03648 1.22268 0.88750 0.98909 0.92861 1.47531 1.27013 1.17058 1.46011 1.15706 0.82861 0.79947 0.80165 1.90834 1.32736 1.81885 1.47319 1.44843 1.25692 1.17759 1.48023 1.20506 0.96089 0.84558 0.92024 1.19312 0.94429 0.88025 1.00175 1.21469 0.96405 1.45675 0.97702 0.92670 1.27022 1.08565 0.93829 0.92639 1.70808 1.08550 1.43154 1.34334 0.82996 0.70748 0.76687 0.76101 1.20756 1.21662 1.19094 1.22898 1.01763 1.05087 0.90120 1.22698 1.00175 0.98245 1.00405 1.22563 0.94354 0.85716 0.96682 0.86595 0.90455 0.89213 0.86194 0.89341 0.89814 0.90946 0.75745 0.96280 0.94263 0.92481 0.89302 0.89159 0.90231 0.91330 0.91252 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 10.76 113.37 1.22 -0.27 16 2 S -0.25 -4.28 21.82 -56.49 -1.23 -5.51 16 3 C -0.06 -1.09 3.55 32.07 0.11 -0.97 16 4 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.09 -1.41 6.43 31.78 0.20 -1.21 16 6 C 0.10 2.03 6.15 86.73 0.53 2.57 16 7 N -0.64 -19.15 3.32 -829.34 -2.76 -21.91 16 8 C 0.71 28.81 8.49 179.05 1.52 30.33 16 9 O -0.64 -31.47 16.60 -3.98 -0.07 -31.53 16 10 N -0.71 -28.86 5.42 -478.53 -2.59 -31.45 16 11 C 0.19 9.05 5.43 86.38 0.47 9.52 16 12 C -0.02 -0.86 0.99 -52.93 -0.05 -0.91 16 13 C -0.57 -29.51 8.44 25.60 0.22 -29.29 16 14 H 0.06 2.75 7.82 -2.91 -0.02 2.72 16 15 C -0.02 -1.09 5.39 84.65 0.46 -0.64 16 16 N -0.93 -55.11 13.57 21.45 0.29 -54.82 16 17 Si 1.11 48.32 29.91 68.60 2.05 50.37 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 21 C -0.16 -6.35 9.96 30.62 0.30 -6.04 16 22 C -0.18 -7.85 8.74 30.62 0.27 -7.58 16 23 C 0.13 3.33 6.39 86.93 0.56 3.88 16 24 H 0.12 1.09 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.38 8.03 -2.39 -0.02 1.36 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.41 14.98 7.21 -92.71 -0.67 14.31 16 32 H 0.02 1.04 7.82 -2.39 -0.02 1.02 16 33 H 0.04 1.80 8.11 -2.39 -0.02 1.78 16 34 H 0.26 15.80 6.19 -92.71 -0.57 15.23 16 35 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 38 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 40 H 0.07 1.79 8.03 -2.39 -0.02 1.77 16 Total: -1.00 -68.51 343.47 2.05 -66.46 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.55 Total: 29.00 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.81 Total: -0.61 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -5.06 Total: -108.17 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.07 Total: -31.53 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.05 Total: 50.37 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -1.23 Total: -5.51 kcal Total: -68.51 2.05 -66.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458729476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.661 kcal (2) G-P(sol) polarization free energy of solvation -68.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds