Wall clock time and date at job start Tue Mar 31 2020 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 C 1.52997 * 109.47239 * 240.00354 * 2 1 3 5 5 O 1.45198 * 109.47241 * 119.99963 * 2 1 3 6 6 C 1.34633 * 117.00323 * 61.84612 * 5 2 1 7 7 O 1.21513 * 119.99889 * 355.94378 * 6 5 2 8 8 N 1.34775 * 120.00461 * 175.66583 * 6 5 2 9 9 C 1.46500 * 120.00252 * 185.72075 * 8 6 5 10 10 C 1.50699 * 112.84735 * 298.19796 * 9 8 6 11 11 O 1.21297 * 119.99503 * 143.73643 * 10 9 8 12 12 N 1.34774 * 120.00152 * 323.73587 * 10 9 8 13 13 C 1.37102 * 120.00180 * 185.12287 * 12 10 9 14 14 H 1.08003 * 119.99724 * 5.33385 * 13 12 10 15 15 C 1.38943 * 120.00282 * 185.33580 * 13 12 10 16 16 N 1.31411 * 119.99870 * 5.23354 * 15 13 12 17 17 Si 1.86799 * 119.99878 * 185.24181 * 15 13 12 18 18 H 1.48497 * 109.47589 * 59.99707 * 17 15 13 19 19 H 1.48503 * 109.46903 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47298 * 299.99431 * 17 15 13 21 21 C 1.53780 * 113.61423 * 167.00283 * 9 8 6 22 22 C 1.53952 * 87.01834 * 220.04604 * 21 9 8 23 23 C 1.53781 * 87.11284 * 25.36588 * 22 21 9 24 24 H 1.09002 * 109.47317 * 299.99783 * 1 2 3 25 25 H 1.08997 * 109.47865 * 60.00243 * 1 2 3 26 26 H 1.09005 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47268 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47168 * 300.00099 * 3 2 1 29 29 H 1.08998 * 109.47709 * 59.99942 * 3 2 1 30 30 H 1.08998 * 109.46829 * 297.67410 * 4 2 1 31 31 H 1.09000 * 109.47374 * 57.66715 * 4 2 1 32 32 H 1.09001 * 109.47549 * 177.67298 * 4 2 1 33 33 H 0.97003 * 119.99204 * 5.72278 * 8 6 5 34 34 H 0.97002 * 120.00124 * 5.12036 * 12 10 9 35 35 H 0.97002 * 119.99715 * 179.97438 * 16 15 13 36 36 H 1.09002 * 113.61091 * 334.56684 * 21 9 8 37 37 H 1.09000 * 113.61605 * 105.46899 * 21 9 8 38 38 H 1.08992 * 113.54020 * 270.81330 * 22 21 9 39 39 H 1.09001 * 113.74255 * 139.94287 * 22 21 9 40 40 H 1.08998 * 113.61338 * 220.08979 * 23 22 21 41 41 H 1.08995 * 113.69699 * 89.19338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6842 -1.9829 1.3192 7 8 0.9496 -2.5099 0.5073 8 7 2.1731 -2.6997 2.3505 9 6 1.9173 -4.1401 2.4279 10 6 0.4505 -4.4691 2.5344 11 8 0.0081 -5.4536 1.9810 12 7 -0.3697 -3.6693 3.2444 13 6 -1.6812 -4.0233 3.4293 14 1 -2.0361 -4.9820 3.0808 15 6 -2.5539 -3.1487 4.0650 16 7 -2.1500 -1.9430 4.3968 17 14 -4.3012 -3.6868 4.4480 18 1 -4.2695 -4.8734 5.3401 19 1 -5.0234 -2.5791 5.1239 20 1 -4.9999 -4.0357 3.1849 21 6 2.7883 -4.8655 3.4672 22 6 2.9177 -6.0077 2.4430 23 6 2.6550 -4.9554 1.3528 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.7111 -1.7601 -1.2287 31 1 1.6429 -0.2320 -2.1387 32 1 3.1292 -0.6852 -1.2704 33 1 2.6943 -2.2618 3.0415 34 1 -0.0320 -2.8433 3.6248 35 1 -2.7594 -1.3323 4.8402 36 1 3.7302 -4.3588 3.6774 37 1 2.2470 -5.1470 4.3704 38 1 2.1306 -6.7572 2.5251 39 1 3.9152 -6.4447 2.3967 40 1 2.0064 -5.3094 0.5516 41 1 3.5596 -4.4727 0.9829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496012323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:03 Heat of formation + Delta-G solvation = -98.713375 kcal Electronic energy + Delta-G solvation = -24246.767146 eV Core-core repulsion = 20741.674831 eV Total energy + Delta-G solvation = -3505.092316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64684 -39.47463 -36.76417 -36.24587 -34.07290 -33.78382 -32.71038 -31.04960 -27.28832 -27.10947 -26.17539 -25.41753 -24.34129 -22.05556 -20.85398 -19.61876 -18.38355 -17.81707 -17.66089 -16.87003 -15.86484 -15.65317 -15.10995 -14.80076 -14.28309 -14.11184 -14.00245 -13.81522 -13.29939 -13.14052 -12.52244 -12.38048 -12.10800 -12.06040 -11.74002 -11.66884 -11.57162 -11.46310 -11.28126 -11.07703 -11.03392 -10.92006 -10.57106 -10.41689 -10.19587 -10.15748 -10.03439 -9.55756 -9.43069 -9.19849 -8.10346 -7.91197 -6.37758 -3.77676 2.49890 3.21617 3.27255 3.31619 3.34755 3.80345 4.18467 4.48580 4.72476 4.88537 4.90665 4.91979 4.95050 5.10021 5.15318 5.44550 5.53934 5.56192 5.68221 5.79968 5.81771 5.84876 5.92800 5.96817 6.07923 6.14553 6.15811 6.29061 6.35603 6.43596 6.51068 6.58473 6.75171 6.83592 6.91576 7.58067 7.82988 8.09511 8.64644 8.87612 9.20731 9.58349 10.09390 10.79211 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.007295 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.119491 B = 3837.242624 C = 5418.108122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.138 3.862 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.369 6.369 6 C 0.649 3.351 7 O -0.543 6.543 8 N -0.701 5.701 9 C 0.158 3.842 10 C 0.464 3.536 11 O -0.583 6.583 12 N -0.547 5.547 13 C -0.298 4.298 14 H 0.102 0.898 15 C 0.024 3.976 16 N -0.897 5.897 17 Si 0.930 3.070 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.123 4.123 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.402 0.598 34 H 0.391 0.609 35 H 0.271 0.729 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.158 4.678 -4.133 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.101 3.899 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.284 6.284 6 C 0.402 3.598 7 O -0.430 6.430 8 N -0.362 5.362 9 C 0.069 3.931 10 C 0.248 3.752 11 O -0.467 6.467 12 N -0.182 5.182 13 C -0.428 4.428 14 H 0.120 0.880 15 C -0.178 4.178 16 N -0.537 5.537 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.169 4.169 22 C -0.170 4.170 23 C -0.162 4.162 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.224 0.776 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.334 3.979 -4.861 12.958 hybrid contribution -0.558 0.772 0.731 1.200 sum 10.776 4.750 -4.130 12.479 Atomic orbital electron populations 1.22502 0.93662 1.05778 1.02103 1.21971 0.94667 0.91145 0.82096 1.21838 1.01734 0.93023 1.02966 1.22513 1.00925 1.03953 0.96611 1.86250 1.72979 1.23153 1.46044 1.18058 0.79185 0.80209 0.82368 1.90966 1.37422 1.71052 1.43519 1.44783 1.57863 1.08051 1.25458 1.22060 0.95170 0.76644 0.99205 1.19097 0.85940 0.86330 0.83818 1.90512 1.75796 1.30418 1.49982 1.41709 1.09550 1.21116 1.45788 1.19665 0.84794 1.03155 1.35145 0.88026 1.25265 1.00232 0.94883 0.97435 1.69643 1.37233 1.05772 1.41094 0.85938 0.81659 0.77946 0.78795 1.19894 1.20979 1.19869 1.23248 0.98989 0.96946 0.97683 1.22722 1.02052 0.96602 0.95581 1.23086 0.99339 0.95992 0.97780 0.91913 0.91793 0.88864 0.91834 0.90473 0.91460 0.89222 0.91431 0.92571 0.76328 0.77611 0.91906 0.89188 0.90136 0.88750 0.91206 0.89615 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.40 37.16 0.31 -2.72 16 2 C 0.14 2.05 1.13 -90.62 -0.10 1.95 16 3 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16 4 C -0.18 -2.53 8.38 37.16 0.31 -2.22 16 5 O -0.37 -6.30 9.94 -40.30 -0.40 -6.70 16 6 C 0.65 12.55 7.71 54.05 0.42 12.96 16 7 O -0.54 -12.25 10.90 -19.28 -0.21 -12.46 16 8 N -0.70 -12.06 4.71 -52.79 -0.25 -12.30 16 9 C 0.16 2.95 1.08 -132.16 -0.14 2.81 16 10 C 0.46 11.54 5.74 -10.99 -0.06 11.48 16 11 O -0.58 -16.41 14.97 5.54 0.08 -16.33 16 12 N -0.55 -14.59 5.23 -10.96 -0.06 -14.64 16 13 C -0.30 -8.61 9.66 -14.93 -0.14 -8.75 16 14 H 0.10 3.06 7.20 -52.48 -0.38 2.68 16 15 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 16 N -0.90 -25.03 13.08 55.50 0.73 -24.30 16 17 Si 0.93 21.58 29.56 -169.99 -5.02 16.55 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.13 -1.91 7.38 -25.83 -0.19 -2.10 16 22 C -0.13 -1.96 7.70 -25.83 -0.20 -2.16 16 23 C -0.12 -2.10 6.84 -25.92 -0.18 -2.27 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.92 5.88 -51.93 -0.31 1.61 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.51 5.83 -51.93 -0.30 1.21 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 5.60 8.79 -40.82 -0.36 5.24 16 34 H 0.39 10.19 7.44 -40.82 -0.30 9.89 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 38 H 0.09 1.61 7.63 -51.93 -0.40 1.22 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.71 7.63 -51.93 -0.40 1.32 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 336.29 15.07 5.07 5.07 Total: -1.00 -33.47 336.29 -6.03 -39.50 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -6.22 Total: 17.29 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 0.25 Total: 8.33 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.42 Total: -51.25 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.53 Total: -35.49 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.47 -6.03 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496012323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.213 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds