Wall clock time and date at job start Tue Mar 31 2020 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 C 1.52997 * 109.47239 * 240.00354 * 2 1 3 5 5 O 1.45198 * 109.47241 * 119.99963 * 2 1 3 6 6 C 1.34633 * 117.00323 * 61.84612 * 5 2 1 7 7 O 1.21513 * 119.99889 * 355.94378 * 6 5 2 8 8 N 1.34775 * 120.00461 * 175.66583 * 6 5 2 9 9 C 1.46500 * 120.00252 * 185.72075 * 8 6 5 10 10 C 1.50699 * 112.84735 * 298.19796 * 9 8 6 11 11 O 1.21297 * 119.99503 * 143.73643 * 10 9 8 12 12 N 1.34774 * 120.00152 * 323.73587 * 10 9 8 13 13 C 1.37102 * 120.00180 * 185.12287 * 12 10 9 14 14 H 1.08003 * 119.99724 * 5.33385 * 13 12 10 15 15 C 1.38943 * 120.00282 * 185.33580 * 13 12 10 16 16 N 1.31411 * 119.99870 * 5.23354 * 15 13 12 17 17 Si 1.86799 * 119.99878 * 185.24181 * 15 13 12 18 18 H 1.48497 * 109.47589 * 59.99707 * 17 15 13 19 19 H 1.48503 * 109.46903 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47298 * 299.99431 * 17 15 13 21 21 C 1.53780 * 113.61423 * 167.00283 * 9 8 6 22 22 C 1.53952 * 87.01834 * 220.04604 * 21 9 8 23 23 C 1.53781 * 87.11284 * 25.36588 * 22 21 9 24 24 H 1.09002 * 109.47317 * 299.99783 * 1 2 3 25 25 H 1.08997 * 109.47865 * 60.00243 * 1 2 3 26 26 H 1.09005 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47268 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47168 * 300.00099 * 3 2 1 29 29 H 1.08998 * 109.47709 * 59.99942 * 3 2 1 30 30 H 1.08998 * 109.46829 * 297.67410 * 4 2 1 31 31 H 1.09000 * 109.47374 * 57.66715 * 4 2 1 32 32 H 1.09001 * 109.47549 * 177.67298 * 4 2 1 33 33 H 0.97003 * 119.99204 * 5.72278 * 8 6 5 34 34 H 0.97002 * 120.00124 * 5.12036 * 12 10 9 35 35 H 0.97002 * 119.99715 * 179.97438 * 16 15 13 36 36 H 1.09002 * 113.61091 * 334.56684 * 21 9 8 37 37 H 1.09000 * 113.61605 * 105.46899 * 21 9 8 38 38 H 1.08992 * 113.54020 * 270.81330 * 22 21 9 39 39 H 1.09001 * 113.74255 * 139.94287 * 22 21 9 40 40 H 1.08998 * 113.61338 * 220.08979 * 23 22 21 41 41 H 1.08995 * 113.69699 * 89.19338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6842 -1.9829 1.3192 7 8 0.9496 -2.5099 0.5073 8 7 2.1731 -2.6997 2.3505 9 6 1.9173 -4.1401 2.4279 10 6 0.4505 -4.4691 2.5344 11 8 0.0081 -5.4536 1.9810 12 7 -0.3697 -3.6693 3.2444 13 6 -1.6812 -4.0233 3.4293 14 1 -2.0361 -4.9820 3.0808 15 6 -2.5539 -3.1487 4.0650 16 7 -2.1500 -1.9430 4.3968 17 14 -4.3012 -3.6868 4.4480 18 1 -4.2695 -4.8734 5.3401 19 1 -5.0234 -2.5791 5.1239 20 1 -4.9999 -4.0357 3.1849 21 6 2.7883 -4.8655 3.4672 22 6 2.9177 -6.0077 2.4430 23 6 2.6550 -4.9554 1.3528 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.7111 -1.7601 -1.2287 31 1 1.6429 -0.2320 -2.1387 32 1 3.1292 -0.6852 -1.2704 33 1 2.6943 -2.2618 3.0415 34 1 -0.0320 -2.8433 3.6248 35 1 -2.7594 -1.3323 4.8402 36 1 3.7302 -4.3588 3.6774 37 1 2.2470 -5.1470 4.3704 38 1 2.1306 -6.7572 2.5251 39 1 3.9152 -6.4447 2.3967 40 1 2.0064 -5.3094 0.5516 41 1 3.5596 -4.4727 0.9829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496012323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:02 Heat of formation + Delta-G solvation = -123.916366 kcal Electronic energy + Delta-G solvation = -24247.860030 eV Core-core repulsion = 20741.674831 eV Total energy + Delta-G solvation = -3506.185200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.14118 -40.98915 -38.53718 -37.71051 -36.02213 -35.29908 -34.13125 -33.13423 -28.36489 -28.27307 -27.98158 -26.72239 -26.11717 -23.53188 -22.40575 -20.97673 -20.33287 -19.55895 -19.17400 -18.48188 -17.23918 -17.11756 -16.75082 -16.54565 -15.90166 -15.64250 -15.60515 -15.29281 -15.01178 -14.54422 -14.25500 -13.60445 -13.32528 -13.29684 -13.25692 -13.03354 -12.91771 -12.87403 -12.82131 -12.57323 -12.49228 -12.39762 -12.17917 -12.15868 -11.86059 -11.54477 -11.51040 -11.34910 -11.02049 -10.87246 -10.04840 -9.90616 -8.50402 -5.99707 1.12089 1.35689 1.36163 1.47754 1.82935 1.96798 2.25455 3.01813 3.09388 3.20821 3.54116 3.63678 3.78217 3.81675 3.87400 3.96589 4.13749 4.43326 4.56635 4.60788 4.69605 4.75536 4.76618 4.78324 4.83476 4.90038 4.98553 5.04960 5.08790 5.11403 5.21845 5.30561 5.34383 5.39877 5.51056 5.61643 5.94495 6.44401 6.54440 7.06721 7.43772 7.50109 8.04408 8.66203 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.007295 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.119491 B = 3837.242624 C = 5418.108122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 C -0.130 4.130 4 C -0.176 4.176 5 O -0.365 6.365 6 C 0.643 3.357 7 O -0.582 6.582 8 N -0.687 5.687 9 C 0.146 3.854 10 C 0.459 3.541 11 O -0.626 6.626 12 N -0.558 5.558 13 C -0.338 4.338 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.916 5.916 17 Si 0.994 3.006 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.278 1.278 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.119 4.119 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.420 0.580 34 H 0.391 0.609 35 H 0.278 0.722 36 H 0.141 0.859 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.044 0.956 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.234 6.129 -3.672 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.187 4.187 4 C -0.233 4.233 5 O -0.280 6.280 6 C 0.397 3.603 7 O -0.471 6.471 8 N -0.349 5.349 9 C 0.057 3.943 10 C 0.245 3.755 11 O -0.512 6.512 12 N -0.192 5.192 13 C -0.467 4.467 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.817 3.183 18 H -0.189 1.189 19 H -0.191 1.191 20 H -0.203 1.203 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.158 4.158 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.258 0.742 34 H 0.224 0.776 35 H 0.087 0.913 36 H 0.159 0.841 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.063 0.937 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.452 5.466 -4.369 15.163 hybrid contribution -1.217 0.350 0.502 1.362 sum 12.235 5.816 -3.867 14.088 Atomic orbital electron populations 1.22446 0.95536 1.02804 1.02886 1.22397 0.93452 0.93322 0.81845 1.21858 1.02772 0.89905 1.04186 1.22439 1.02071 1.01767 0.97058 1.86271 1.72695 1.21817 1.47250 1.18346 0.78778 0.80874 0.82340 1.90971 1.39074 1.71986 1.45066 1.44642 1.57391 1.07488 1.25395 1.21993 0.91575 0.77946 1.02750 1.20224 0.88525 0.85020 0.81722 1.90469 1.77585 1.32085 1.51076 1.41752 1.09305 1.21488 1.46659 1.19655 0.86595 1.03086 1.37387 0.90511 1.26092 1.03963 0.94690 0.96439 1.69709 1.38673 1.06305 1.40904 0.84993 0.76553 0.78309 0.78484 1.18878 1.19116 1.20323 1.23332 0.99747 0.95779 0.95956 1.22664 1.03475 0.95677 0.94265 1.23129 0.99389 0.96594 0.96649 0.93219 0.88895 0.93561 0.90158 0.87832 0.91680 0.92870 0.89079 0.90724 0.74175 0.77559 0.91293 0.84111 0.90979 0.91907 0.86633 0.93704 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.02 8.40 71.98 0.60 -5.41 16 2 C 0.13 3.61 1.13 -10.80 -0.01 3.60 16 3 C -0.13 -2.51 8.85 71.98 0.64 -1.87 16 4 C -0.18 -4.65 8.38 71.98 0.60 -4.05 16 5 O -0.37 -12.23 9.94 -55.42 -0.55 -12.78 16 6 C 0.64 25.13 7.71 129.79 1.00 26.13 16 7 O -0.58 -27.52 10.90 19.80 0.22 -27.31 16 8 N -0.69 -23.12 4.71 -551.34 -2.60 -25.72 16 9 C 0.15 5.45 1.08 3.38 0.00 5.45 16 10 C 0.46 23.85 5.74 87.66 0.50 24.35 16 11 O -0.63 -37.44 14.97 -3.08 -0.05 -37.48 16 12 N -0.56 -31.06 5.23 -306.98 -1.61 -32.67 16 13 C -0.34 -20.45 9.66 84.04 0.81 -19.64 16 14 H 0.08 4.92 7.20 -2.91 -0.02 4.90 16 15 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 16 N -0.92 -51.77 13.08 21.66 0.28 -51.48 16 17 Si 0.99 44.83 29.56 68.60 2.03 46.86 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.11 -2.96 7.38 31.18 0.23 -2.73 16 22 C -0.12 -3.44 7.70 31.18 0.24 -3.20 16 23 C -0.12 -3.97 6.84 31.12 0.21 -3.76 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 26 H 0.05 2.00 5.88 -2.38 -0.01 1.99 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.83 5.83 -2.39 -0.01 1.81 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.42 10.84 8.79 -92.71 -0.81 10.02 16 34 H 0.39 21.15 7.44 -92.71 -0.69 20.46 16 35 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.14 2.42 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 38 H 0.06 2.17 7.63 -2.39 -0.02 2.15 16 39 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.04 1.86 7.63 -2.39 -0.02 1.84 16 41 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -79.24 336.29 2.58 -76.66 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.45 Total: 45.23 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 5.30 Total: 18.68 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -3.92 Total: -109.87 kcal Atomic # 8 Polarization: -77.19 SS G_CDS: -0.38 Total: -77.57 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -79.24 2.58 -76.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496012323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.259 kcal (2) G-P(sol) polarization free energy of solvation -79.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds