Wall clock time and date at job start Tue Mar 31 2020 06:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.89273 * 233.51696 * 6 5 3 8 8 C 1.53070 * 109.29524 * 305.57804 * 7 6 5 9 9 N 1.46498 * 109.44278 * 181.23594 * 8 7 6 10 10 C 1.34776 * 119.99920 * 84.79819 * 9 8 7 11 11 O 1.21286 * 120.00057 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99787 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.46879 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47394 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99391 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00556 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99439 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00248 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47114 * 60.00176 * 18 16 14 20 20 H 1.48502 * 109.46928 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46889 * 300.00226 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 8 7 6 23 23 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 24 24 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.46800 * 60.00185 * 1 2 3 27 27 H 1.09002 * 109.58751 * 353.37646 * 6 5 3 28 28 H 1.08996 * 109.58750 * 113.65831 * 6 5 3 29 29 H 1.08997 * 109.50046 * 65.38734 * 7 6 5 30 30 H 1.09003 * 109.49733 * 185.48713 * 7 6 5 31 31 H 1.09007 * 109.35101 * 301.12962 * 8 7 6 32 32 H 0.97004 * 120.00020 * 264.79513 * 9 8 7 33 33 H 1.08998 * 109.47411 * 299.99339 * 12 10 9 34 34 H 1.09002 * 109.47325 * 60.00148 * 12 10 9 35 35 H 1.09004 * 109.47249 * 299.99882 * 13 12 10 36 36 H 1.08992 * 109.47506 * 59.99787 * 13 12 10 37 37 H 0.97005 * 119.99388 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49876 * 178.74890 * 22 8 7 39 39 H 1.09005 * 109.52615 * 58.67140 * 22 8 7 40 40 H 1.08998 * 109.58787 * 246.20220 * 23 5 3 41 41 H 1.09007 * 109.58600 * 6.48533 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4071 -1.0688 9 7 6.9950 1.4582 -2.1647 10 6 8.1205 2.1881 -2.0345 11 8 8.3294 2.8030 -1.0101 12 6 9.1189 2.2410 -3.1621 13 6 10.2957 3.1322 -2.7598 14 6 11.2939 3.1858 -3.8876 15 1 11.1073 2.6391 -4.8002 16 6 12.4447 3.9333 -3.7548 17 7 12.6716 4.5993 -2.6437 18 14 13.6823 3.9990 -5.1525 19 1 13.0305 4.5561 -6.3650 20 1 14.8244 4.8641 -4.7621 21 1 14.1760 2.6286 -5.4413 22 6 5.2133 0.1129 -1.1659 23 6 4.2229 0.0467 0.0017 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.3564 3.3686 -0.1174 28 1 4.6248 2.7042 0.9419 29 1 4.5408 2.5729 -2.1077 30 1 5.6649 3.5333 -1.1155 31 1 6.5514 1.4347 -0.1151 32 1 6.8278 0.9666 -2.9841 33 1 9.4807 1.2350 -3.3746 34 1 8.6408 2.6508 -4.0518 35 1 9.9337 4.1382 -2.5475 36 1 10.7740 2.7229 -1.8700 37 1 13.4812 5.1256 -2.5504 38 1 5.8869 -0.7428 -1.1202 39 1 4.6664 0.0954 -2.1087 40 1 4.7699 -0.0274 0.9415 41 1 3.5757 -0.8227 -0.1140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497218911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:36 Heat of formation + Delta-G solvation = -129.600749 kcal Electronic energy + Delta-G solvation = -22276.976859 eV Core-core repulsion = 18770.545166 eV Total energy + Delta-G solvation = -3506.431693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94996 -39.56400 -38.08049 -36.51260 -34.64293 -33.44700 -31.70660 -31.42306 -30.59701 -27.96703 -26.07127 -24.64340 -23.71376 -22.07633 -21.24154 -20.22800 -19.56370 -18.45298 -17.33851 -16.92297 -16.73681 -15.96564 -15.63013 -15.14767 -14.98634 -14.75651 -14.44417 -14.33271 -13.87167 -13.72797 -13.23199 -13.07896 -12.74417 -12.40744 -12.25609 -12.21736 -12.01275 -11.60325 -11.17050 -11.12226 -11.08477 -10.96123 -10.89298 -10.68601 -10.60471 -9.95686 -9.67164 -9.27318 -9.13117 -8.94140 -8.82203 -8.31931 -5.96205 -4.00705 1.84552 2.52132 3.22658 3.34248 3.38532 3.40012 3.46497 3.57336 4.40164 4.47322 4.63009 4.70008 4.81176 4.88278 4.93107 4.97359 5.10376 5.17663 5.22087 5.38618 5.42629 5.49044 5.58696 5.62390 5.67140 5.84221 5.98508 6.11160 6.19596 6.22584 6.24627 6.71817 6.88986 7.00447 7.73693 7.85939 7.86930 7.97061 8.06939 8.38456 8.76580 9.07723 9.62801 11.14666 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.053714 B = 0.002561 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.158447 B =10930.478007 C =11089.400228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.649 3.351 4 O -0.574 6.574 5 N -0.593 5.593 6 C 0.129 3.871 7 C -0.146 4.146 8 C 0.144 3.856 9 N -0.741 5.741 10 C 0.511 3.489 11 O -0.533 6.533 12 C -0.131 4.131 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.142 4.142 23 C 0.116 3.884 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.744 -12.664 4.208 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.463 6.463 5 N -0.334 5.334 6 C 0.008 3.992 7 C -0.185 4.185 8 C 0.039 3.961 9 N -0.394 5.394 10 C 0.299 3.701 11 O -0.408 6.408 12 C -0.171 4.171 13 C 0.000 4.000 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.181 4.181 23 C -0.007 4.007 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.709 -11.798 5.059 26.086 hybrid contribution 0.497 -0.155 -1.204 1.312 sum -22.212 -11.953 3.855 25.517 Atomic orbital electron populations 1.23192 0.74472 1.03421 1.02755 1.86222 1.24113 1.31110 1.87134 1.18036 0.83177 0.82115 0.76335 1.90995 1.64211 1.34938 1.56132 1.47004 1.01829 1.08828 1.75720 1.21686 0.95104 0.83267 0.99147 1.22380 0.97178 1.00417 0.98536 1.20821 0.89105 0.93551 0.92662 1.46276 1.21586 1.52728 1.18827 1.21577 0.81319 0.77224 0.89939 1.90668 1.76422 1.43117 1.30632 1.21871 0.96678 1.03201 0.95305 1.18889 0.89973 0.94410 0.96733 1.21189 1.04566 1.29717 1.01162 0.92685 1.25027 0.98133 0.95518 0.95730 1.69992 1.26530 1.30747 1.25560 0.86647 0.80833 0.77947 0.82461 1.20259 1.21292 1.20261 1.22224 0.98140 0.98340 0.99371 1.21720 0.93519 0.86617 0.98862 0.87980 0.91869 0.91872 0.88340 0.90422 0.91290 0.89252 0.89278 0.76955 0.90277 0.90284 0.95848 0.95846 0.92894 0.89561 0.90847 0.90580 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -3.54 9.20 -40.31 -0.37 -3.91 16 3 C 0.65 7.61 8.43 54.06 0.46 8.07 16 4 O -0.57 -8.41 15.55 -19.28 -0.30 -8.71 16 5 N -0.59 -6.01 2.97 -178.53 -0.53 -6.54 16 6 C 0.13 1.36 6.43 -3.71 -0.02 1.33 16 7 C -0.15 -1.64 5.66 -26.59 -0.15 -1.79 16 8 C 0.14 1.62 2.41 -67.88 -0.16 1.45 16 9 N -0.74 -9.55 5.08 -53.75 -0.27 -9.83 16 10 C 0.51 9.35 7.79 -10.99 -0.09 9.26 16 11 O -0.53 -12.02 15.65 5.55 0.09 -11.93 16 12 C -0.13 -2.58 5.64 -27.88 -0.16 -2.74 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 14 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.14 -1.12 5.55 -26.59 -0.15 -1.27 16 23 C 0.12 0.89 6.45 -3.68 -0.02 0.86 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.10 1.12 7.00 -51.93 -0.36 0.75 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 32 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.64 6.93 -51.92 -0.36 0.28 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -35.91 342.25 -6.77 -42.69 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.50 Total: -0.74 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 0.24 Total: 3.86 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.07 Total: -43.00 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.58 Total: -24.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.91 -6.77 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497218911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.914 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds