Wall clock time and date at job start Tue Mar 31 2020 06:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.89273 * 233.51696 * 6 5 3 8 8 C 1.53070 * 109.29524 * 305.57804 * 7 6 5 9 9 N 1.46498 * 109.44278 * 181.23594 * 8 7 6 10 10 C 1.34776 * 119.99920 * 84.79819 * 9 8 7 11 11 O 1.21286 * 120.00057 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99787 * 180.02562 * 10 9 8 13 13 C 1.53002 * 109.46879 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47394 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99391 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00556 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99439 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00248 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47114 * 60.00176 * 18 16 14 20 20 H 1.48502 * 109.46928 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46889 * 300.00226 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 8 7 6 23 23 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 24 24 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.46800 * 60.00185 * 1 2 3 27 27 H 1.09002 * 109.58751 * 353.37646 * 6 5 3 28 28 H 1.08996 * 109.58750 * 113.65831 * 6 5 3 29 29 H 1.08997 * 109.50046 * 65.38734 * 7 6 5 30 30 H 1.09003 * 109.49733 * 185.48713 * 7 6 5 31 31 H 1.09007 * 109.35101 * 301.12962 * 8 7 6 32 32 H 0.97004 * 120.00020 * 264.79513 * 9 8 7 33 33 H 1.08998 * 109.47411 * 299.99339 * 12 10 9 34 34 H 1.09002 * 109.47325 * 60.00148 * 12 10 9 35 35 H 1.09004 * 109.47249 * 299.99882 * 13 12 10 36 36 H 1.08992 * 109.47506 * 59.99787 * 13 12 10 37 37 H 0.97005 * 119.99388 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49876 * 178.74890 * 22 8 7 39 39 H 1.09005 * 109.52615 * 58.67140 * 22 8 7 40 40 H 1.08998 * 109.58787 * 246.20220 * 23 5 3 41 41 H 1.09007 * 109.58600 * 6.48533 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4071 -1.0688 9 7 6.9950 1.4582 -2.1647 10 6 8.1205 2.1881 -2.0345 11 8 8.3294 2.8030 -1.0101 12 6 9.1189 2.2410 -3.1621 13 6 10.2957 3.1322 -2.7598 14 6 11.2939 3.1858 -3.8876 15 1 11.1073 2.6391 -4.8002 16 6 12.4447 3.9333 -3.7548 17 7 12.6716 4.5993 -2.6437 18 14 13.6823 3.9990 -5.1525 19 1 13.0305 4.5561 -6.3650 20 1 14.8244 4.8641 -4.7621 21 1 14.1760 2.6286 -5.4413 22 6 5.2133 0.1129 -1.1659 23 6 4.2229 0.0467 0.0017 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.3564 3.3686 -0.1174 28 1 4.6248 2.7042 0.9419 29 1 4.5408 2.5729 -2.1077 30 1 5.6649 3.5333 -1.1155 31 1 6.5514 1.4347 -0.1151 32 1 6.8278 0.9666 -2.9841 33 1 9.4807 1.2350 -3.3746 34 1 8.6408 2.6508 -4.0518 35 1 9.9337 4.1382 -2.5475 36 1 10.7740 2.7229 -1.8700 37 1 13.4812 5.1256 -2.5504 38 1 5.8869 -0.7428 -1.1202 39 1 4.6664 0.0954 -2.1087 40 1 4.7699 -0.0274 0.9415 41 1 3.5757 -0.8227 -0.1140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497218911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:36 Heat of formation + Delta-G solvation = -155.793366 kcal Electronic energy + Delta-G solvation = -22278.112656 eV Core-core repulsion = 18770.545166 eV Total energy + Delta-G solvation = -3507.567490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80149 -40.82043 -39.09464 -37.39720 -35.82237 -35.47918 -33.22686 -32.30294 -32.02860 -28.64810 -27.77758 -25.81973 -24.51718 -23.61018 -22.41653 -21.27755 -20.82906 -19.30391 -18.74182 -18.16537 -17.63460 -17.34113 -17.08239 -16.45704 -16.38907 -15.90491 -15.47990 -15.21427 -14.93822 -14.65740 -14.58862 -14.18192 -14.09610 -13.80197 -13.42217 -13.21288 -13.04314 -12.95297 -12.76987 -12.49977 -12.35232 -11.99860 -11.91638 -11.86538 -11.80558 -11.62789 -11.52806 -11.30378 -10.69844 -10.54860 -10.03846 -9.90769 -8.16799 -6.30722 1.08700 1.42783 1.47153 1.54849 1.63995 1.76252 2.26257 2.45913 2.87889 3.16078 3.62489 3.78217 3.95696 4.03699 4.11247 4.23025 4.33808 4.36647 4.37737 4.48532 4.57926 4.59065 4.67972 4.71173 4.73861 4.78776 4.91290 5.02658 5.10007 5.22975 5.23717 5.38519 5.49787 5.58476 5.66138 5.87521 6.19326 6.19410 6.66941 6.88076 7.12658 7.38877 7.41413 8.95524 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.053714 B = 0.002561 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.158447 B =10930.478007 C =11089.400228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.368 6.368 3 C 0.646 3.354 4 O -0.611 6.611 5 N -0.591 5.591 6 C 0.134 3.866 7 C -0.138 4.138 8 C 0.141 3.859 9 N -0.715 5.715 10 C 0.513 3.487 11 O -0.586 6.586 12 C -0.121 4.121 13 C 0.042 3.958 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.289 1.289 21 H -0.262 1.262 22 C -0.129 4.129 23 C 0.115 3.885 24 H 0.138 0.862 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.416 0.584 33 H 0.105 0.895 34 H 0.102 0.898 35 H -0.019 1.019 36 H -0.017 1.017 37 H 0.262 0.738 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.618 -15.288 2.335 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.282 6.282 3 C 0.401 3.599 4 O -0.503 6.503 5 N -0.331 5.331 6 C 0.012 3.988 7 C -0.177 4.177 8 C 0.037 3.963 9 N -0.367 5.367 10 C 0.302 3.698 11 O -0.465 6.465 12 C -0.160 4.160 13 C 0.005 3.995 14 C -0.581 4.581 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.167 4.167 23 C -0.007 4.007 24 H 0.156 0.844 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.123 0.877 34 H 0.120 0.880 35 H -0.001 1.001 36 H 0.001 0.999 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -23.630 -14.500 3.146 27.902 hybrid contribution 0.683 0.631 -0.576 1.094 sum -22.947 -13.869 2.570 26.936 Atomic orbital electron populations 1.23501 0.72881 1.05684 1.02414 1.86231 1.25626 1.29600 1.86708 1.18219 0.83479 0.82280 0.75933 1.90970 1.65132 1.36313 1.57842 1.47070 1.01678 1.09336 1.75030 1.21542 0.94582 0.83640 0.98991 1.22252 0.96991 0.99297 0.99178 1.20978 0.88702 0.95575 0.91089 1.45958 1.19921 1.50797 1.20049 1.21273 0.82458 0.77418 0.88697 1.90659 1.77812 1.45649 1.32388 1.21636 0.94888 1.03053 0.96454 1.18680 0.92328 0.93379 0.95158 1.21706 1.04870 1.29565 1.02006 0.90632 1.26142 1.00754 0.94985 0.98660 1.70176 1.27376 1.31898 1.28312 0.85381 0.77583 0.78573 0.78749 1.18772 1.21435 1.18631 1.22161 0.97925 0.96592 1.00067 1.21924 0.93477 0.86039 0.99293 0.84370 0.92257 0.92274 0.89465 0.89968 0.90712 0.91929 0.91116 0.74673 0.87692 0.88019 1.00078 0.99892 0.92898 0.87564 0.89672 0.89596 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.56 113.37 1.20 1.75 16 2 O -0.37 -6.24 9.20 -55.44 -0.51 -6.75 16 3 C 0.65 14.41 8.43 129.79 1.09 15.51 16 4 O -0.61 -17.86 15.55 19.81 0.31 -17.55 16 5 N -0.59 -11.12 2.97 -949.14 -2.82 -13.94 16 6 C 0.13 2.80 6.43 86.36 0.56 3.36 16 7 C -0.14 -3.07 5.66 30.68 0.17 -2.89 16 8 C 0.14 2.98 2.41 45.03 0.11 3.09 16 9 N -0.71 -17.16 5.08 -442.35 -2.25 -19.41 16 10 C 0.51 18.75 7.79 87.66 0.68 19.43 16 11 O -0.59 -27.53 15.65 -3.05 -0.05 -27.57 16 12 C -0.12 -4.68 5.64 29.85 0.17 -4.51 16 13 C 0.04 2.33 4.26 29.85 0.13 2.45 16 14 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 15 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 16 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 17 N -0.94 -59.51 13.29 21.45 0.28 -59.23 16 18 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 C -0.13 -1.61 5.55 30.69 0.17 -1.44 16 23 C 0.11 1.44 6.45 86.38 0.56 1.99 16 24 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.09 2.04 7.00 -2.39 -0.02 2.02 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.82 7.58 -2.38 -0.02 1.80 16 32 H 0.42 6.97 8.60 -92.71 -0.80 6.18 16 33 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 35 H -0.02 -1.21 8.10 -2.38 -0.02 -1.23 16 36 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 37 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 1.10 6.93 -2.38 -0.02 1.08 16 Total: -1.00 -82.09 342.25 2.75 -79.34 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.23 Total: 10.73 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.53 Total: 8.20 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.78 Total: -92.58 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.25 Total: -51.87 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -82.09 2.75 -79.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497218911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.450 kcal (2) G-P(sol) polarization free energy of solvation -82.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds