Wall clock time and date at job start Tue Mar 31 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46032 * 2 1 4 4 C 1.53041 * 109.46560 * 240.03546 * 2 1 3 5 5 C 1.53625 * 109.24203 * 178.48857 * 4 2 1 6 6 N 1.46923 * 108.53899 * 54.86165 * 5 4 2 7 7 C 1.34781 * 120.63081 * 126.37002 * 6 5 4 8 8 O 1.21579 * 120.00013 * 184.93769 * 7 6 5 9 9 N 1.34775 * 119.99659 * 4.93402 * 7 6 5 10 10 C 1.46500 * 119.99838 * 175.01707 * 9 7 6 11 11 C 1.52994 * 109.47647 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47622 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00242 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00209 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00101 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00111 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46773 * 89.99737 * 16 14 12 18 18 H 1.48500 * 109.47215 * 209.99653 * 16 14 12 19 19 H 1.48501 * 109.47118 * 329.99898 * 16 14 12 20 20 C 1.46924 * 118.73842 * 306.08609 * 6 5 4 21 21 C 1.53040 * 109.45838 * 119.96567 * 2 1 3 22 22 H 1.08999 * 109.49739 * 61.43747 * 21 2 1 23 23 C 1.50701 * 109.52651 * 301.35720 * 21 2 1 24 24 O 1.20828 * 119.99743 * 0.14208 * 23 21 2 25 25 O 1.34235 * 120.00170 * 180.14371 * 23 21 2 26 26 H 1.08996 * 109.47686 * 300.03218 * 1 2 3 27 27 H 1.09006 * 109.46613 * 60.03185 * 1 2 3 28 28 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.49757 * 298.57179 * 4 2 1 30 30 H 1.09002 * 109.49193 * 58.63344 * 4 2 1 31 31 H 1.09000 * 109.74153 * 295.12199 * 5 4 2 32 32 H 1.09002 * 109.66075 * 174.54854 * 5 4 2 33 33 H 0.97003 * 120.00657 * 355.01801 * 9 7 6 34 34 H 1.09008 * 109.47232 * 60.00001 * 10 9 7 35 35 H 1.09001 * 109.47122 * 300.00159 * 10 9 7 36 36 H 1.09001 * 109.46982 * 300.00235 * 11 10 9 37 37 H 1.08998 * 109.46812 * 59.99727 * 11 10 9 38 38 H 0.96998 * 120.00481 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.58631 * 173.65483 * 20 6 5 40 40 H 1.08997 * 109.59006 * 293.93195 * 20 6 5 41 41 H 0.96693 * 116.99850 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7207 -1.2501 5 6 3.5757 -0.6846 -1.2641 6 7 4.0678 -1.2487 0.0001 7 6 4.9622 -2.2571 0.0001 8 8 5.2939 -2.7754 1.0487 9 7 5.4886 -2.6908 -1.1623 10 6 6.5402 -3.7108 -1.1547 11 6 6.9597 -4.0217 -2.5928 12 6 8.0409 -5.0713 -2.5850 13 1 8.3941 -5.4759 -1.6480 14 6 8.5802 -5.5145 -3.7740 15 7 8.1506 -5.0215 -4.9151 16 14 9.9211 -6.8150 -3.7643 17 1 9.3028 -8.1638 -3.8290 18 1 10.8082 -6.6203 -4.9392 19 1 10.7180 -6.6951 -2.5170 20 6 3.5713 -0.6885 1.2643 21 6 2.0398 -0.7207 1.2501 22 1 1.6978 -1.7556 1.2383 23 6 1.5107 -0.0302 2.4807 24 8 0.7964 0.9380 2.3700 25 8 1.8330 -0.4907 3.6997 26 1 -0.3634 0.5143 0.8896 27 1 -0.3633 0.5134 -0.8903 28 1 -0.3632 -1.0277 0.0005 29 1 1.6979 -1.7555 -1.2384 30 1 1.6569 -0.2209 -2.1398 31 1 3.9190 0.3452 -1.3629 32 1 3.9489 -1.2781 -2.0988 33 1 5.1713 -2.3277 -2.0039 34 1 6.1634 -4.6177 -0.6816 35 1 7.4010 -3.3410 -0.5975 36 1 6.0991 -4.3913 -3.1504 37 1 7.3366 -3.1148 -3.0654 38 1 8.5297 -5.3334 -5.7517 39 1 3.9416 -1.2845 2.0985 40 1 3.9163 0.3401 1.3687 41 1 1.4694 -0.0150 4.4589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518527698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:43 Heat of formation + Delta-G solvation = -130.444973 kcal Electronic energy + Delta-G solvation = -22728.588694 eV Core-core repulsion = 19222.120393 eV Total energy + Delta-G solvation = -3506.468301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.13148 -39.90562 -37.77580 -36.40972 -34.93425 -33.92934 -32.84980 -31.74660 -29.61631 -28.36222 -25.39692 -24.34079 -23.39039 -22.34707 -21.09711 -20.35540 -19.52371 -18.38482 -17.98235 -16.76091 -16.54633 -16.23958 -15.60926 -15.31571 -14.80632 -14.53207 -14.32781 -13.98531 -13.83832 -13.77899 -13.49255 -12.98448 -12.87030 -12.39131 -12.25326 -12.11961 -11.83942 -11.68890 -11.31321 -11.18187 -11.08669 -11.02941 -10.77266 -10.63307 -10.42450 -10.32457 -9.90661 -9.55356 -9.26904 -8.81449 -8.47545 -8.23807 -6.09546 -4.12095 1.84653 2.60058 2.93858 3.29737 3.35917 3.40395 3.48167 4.15025 4.22874 4.42354 4.43921 4.57570 4.68693 4.89844 5.06272 5.15251 5.19009 5.27709 5.35479 5.42228 5.51642 5.57187 5.66023 5.72096 5.78258 5.97709 6.06394 6.24171 6.32812 6.39095 6.47866 6.76430 6.97071 7.10265 7.54700 7.59997 7.62344 7.89492 8.22666 8.34012 8.89659 8.95499 9.52721 11.02137 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036008 B = 0.003034 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.422707 B = 9226.199592 C = 9815.860517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 H 0.081 0.919 4 C -0.129 4.129 5 C 0.107 3.893 6 N -0.634 5.634 7 C 0.704 3.296 8 O -0.593 6.593 9 N -0.737 5.737 10 C 0.138 3.862 11 C 0.013 3.987 12 C -0.520 4.520 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.143 3.857 21 C -0.093 4.093 22 H 0.114 0.886 23 C 0.489 3.511 24 O -0.510 6.510 25 O -0.511 6.511 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.393 0.607 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 12.465 9.810 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.092 4.092 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.016 4.016 6 N -0.373 5.373 7 C 0.405 3.595 8 O -0.471 6.471 9 N -0.393 5.393 10 C 0.016 3.984 11 C -0.024 4.024 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C 0.019 3.981 21 C -0.113 4.113 22 H 0.132 0.868 23 C 0.331 3.669 24 O -0.398 6.398 25 O -0.323 6.323 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.229 0.771 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -15.299 12.089 10.004 21.915 hybrid contribution 0.228 -0.205 -0.112 0.327 sum -15.071 11.883 9.892 21.592 Atomic orbital electron populations 1.22124 0.94235 1.01940 1.03655 1.20998 0.96664 0.99556 0.92011 0.90041 1.22098 0.95135 1.01784 0.97741 1.21787 0.94035 0.99520 0.86281 1.47212 1.46381 1.37423 1.06308 1.15938 0.79077 0.79531 0.84946 1.90886 1.65356 1.59842 1.31021 1.45716 1.42229 1.44914 1.06393 1.21622 0.87189 0.88361 1.01246 1.19319 0.96880 0.97299 0.88932 1.21049 1.20036 1.21970 0.92861 0.92199 1.24994 0.97049 0.96762 0.95486 1.69952 1.42882 1.43104 0.97426 0.86511 0.81631 0.81738 0.77665 1.20564 1.21195 1.19706 1.21205 0.89365 0.99580 0.87989 1.21574 0.98146 1.01832 0.89788 0.86776 1.23315 0.77174 0.81741 0.84648 1.90652 1.35439 1.26674 1.87026 1.84600 1.71160 1.59697 1.16807 0.90100 0.92372 0.93090 0.90895 0.89829 0.91085 0.89591 0.77145 0.92641 0.92778 0.96000 0.95991 0.92861 0.87415 0.91448 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.85 37.16 0.33 -1.03 16 2 C -0.07 -0.63 1.87 -90.58 -0.17 -0.80 16 3 H 0.08 0.71 8.13 -51.92 -0.42 0.29 16 4 C -0.13 -1.05 5.38 -26.39 -0.14 -1.19 16 5 C 0.11 1.04 6.42 -3.49 -0.02 1.01 16 6 N -0.63 -8.17 2.97 -178.24 -0.53 -8.70 16 7 C 0.70 12.26 8.30 -86.92 -0.72 11.54 16 8 O -0.59 -12.55 15.77 5.30 0.08 -12.47 16 9 N -0.74 -12.99 5.46 -65.23 -0.36 -13.35 16 10 C 0.14 2.95 5.62 -4.04 -0.02 2.93 16 11 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 12 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 16 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.14 1.61 5.65 -3.71 -0.02 1.59 16 21 C -0.09 -0.88 2.33 -91.65 -0.21 -1.10 16 22 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 23 C 0.49 4.64 7.34 36.01 0.26 4.90 16 24 O -0.51 -5.75 14.33 -18.75 -0.27 -6.02 16 25 O -0.51 -4.02 13.35 -39.27 -0.52 -4.54 16 26 H 0.08 0.80 5.40 -51.93 -0.28 0.52 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.83 5.64 -51.93 -0.29 0.54 16 33 H 0.39 5.98 5.96 -40.82 -0.24 5.74 16 34 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.11 1.42 7.00 -51.93 -0.36 1.06 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.41 1.39 9.10 45.56 0.41 1.81 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -33.68 334.28 -7.49 -41.17 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.38 Total: 2.89 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.27 Total: 4.92 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.15 Total: -47.24 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.71 Total: -23.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.68 -7.49 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518527698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.275 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds