Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.46032 * 2 1 4 4 C 1.53041 * 109.46560 * 240.03546 * 2 1 3 5 5 C 1.53625 * 109.24203 * 178.48857 * 4 2 1 6 6 N 1.46923 * 108.53899 * 54.86165 * 5 4 2 7 7 C 1.34781 * 120.63081 * 126.37002 * 6 5 4 8 8 O 1.21579 * 120.00013 * 184.93769 * 7 6 5 9 9 N 1.34775 * 119.99659 * 4.93402 * 7 6 5 10 10 C 1.46500 * 119.99838 * 175.01707 * 9 7 6 11 11 C 1.52994 * 109.47647 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47622 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00242 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00209 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00101 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00111 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.46773 * 89.99737 * 16 14 12 18 18 H 1.48500 * 109.47215 * 209.99653 * 16 14 12 19 19 H 1.48501 * 109.47118 * 329.99898 * 16 14 12 20 20 C 1.46924 * 118.73842 * 306.08609 * 6 5 4 21 21 C 1.53040 * 109.45838 * 119.96567 * 2 1 3 22 22 H 1.08999 * 109.49739 * 61.43747 * 21 2 1 23 23 C 1.50701 * 109.52651 * 301.35720 * 21 2 1 24 24 O 1.20828 * 119.99743 * 0.14208 * 23 21 2 25 25 O 1.34235 * 120.00170 * 180.14371 * 23 21 2 26 26 H 1.08996 * 109.47686 * 300.03218 * 1 2 3 27 27 H 1.09006 * 109.46613 * 60.03185 * 1 2 3 28 28 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.49757 * 298.57179 * 4 2 1 30 30 H 1.09002 * 109.49193 * 58.63344 * 4 2 1 31 31 H 1.09000 * 109.74153 * 295.12199 * 5 4 2 32 32 H 1.09002 * 109.66075 * 174.54854 * 5 4 2 33 33 H 0.97003 * 120.00657 * 355.01801 * 9 7 6 34 34 H 1.09008 * 109.47232 * 60.00001 * 10 9 7 35 35 H 1.09001 * 109.47122 * 300.00159 * 10 9 7 36 36 H 1.09001 * 109.46982 * 300.00235 * 11 10 9 37 37 H 1.08998 * 109.46812 * 59.99727 * 11 10 9 38 38 H 0.96998 * 120.00481 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.58631 * 173.65483 * 20 6 5 40 40 H 1.08997 * 109.59006 * 293.93195 * 20 6 5 41 41 H 0.96693 * 116.99850 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7207 -1.2501 5 6 3.5757 -0.6846 -1.2641 6 7 4.0678 -1.2487 0.0001 7 6 4.9622 -2.2571 0.0001 8 8 5.2939 -2.7754 1.0487 9 7 5.4886 -2.6908 -1.1623 10 6 6.5402 -3.7108 -1.1547 11 6 6.9597 -4.0217 -2.5928 12 6 8.0409 -5.0713 -2.5850 13 1 8.3941 -5.4759 -1.6480 14 6 8.5802 -5.5145 -3.7740 15 7 8.1506 -5.0215 -4.9151 16 14 9.9211 -6.8150 -3.7643 17 1 9.3028 -8.1638 -3.8290 18 1 10.8082 -6.6203 -4.9392 19 1 10.7180 -6.6951 -2.5170 20 6 3.5713 -0.6885 1.2643 21 6 2.0398 -0.7207 1.2501 22 1 1.6978 -1.7556 1.2383 23 6 1.5107 -0.0302 2.4807 24 8 0.7964 0.9380 2.3700 25 8 1.8330 -0.4907 3.6997 26 1 -0.3634 0.5143 0.8896 27 1 -0.3633 0.5134 -0.8903 28 1 -0.3632 -1.0277 0.0005 29 1 1.6979 -1.7555 -1.2384 30 1 1.6569 -0.2209 -2.1398 31 1 3.9190 0.3452 -1.3629 32 1 3.9489 -1.2781 -2.0988 33 1 5.1713 -2.3277 -2.0039 34 1 6.1634 -4.6177 -0.6816 35 1 7.4010 -3.3410 -0.5975 36 1 6.0991 -4.3913 -3.1504 37 1 7.3366 -3.1148 -3.0654 38 1 8.5297 -5.3334 -5.7517 39 1 3.9416 -1.2845 2.0985 40 1 3.9163 0.3401 1.3687 41 1 1.4694 -0.0150 4.4589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518527698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -153.739356 kcal Electronic energy + Delta-G solvation = -22729.598814 eV Core-core repulsion = 19222.120393 eV Total energy + Delta-G solvation = -3507.478421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.99365 -41.03613 -38.75970 -37.17784 -36.61360 -35.09830 -34.59701 -32.68036 -31.33017 -29.28505 -26.93137 -25.54915 -24.41575 -23.08624 -22.89679 -21.34643 -20.62309 -19.30901 -18.95214 -18.47239 -17.58370 -17.39913 -16.84331 -16.48511 -16.45623 -15.58154 -15.43925 -15.26811 -15.01960 -14.78961 -14.43312 -14.26569 -14.23803 -13.78987 -13.18869 -13.09892 -12.93755 -12.84966 -12.57944 -12.50409 -12.40805 -12.23048 -12.02085 -11.90417 -11.64142 -11.53032 -11.46169 -11.25924 -11.00753 -10.58579 -10.17471 -9.53869 -8.22314 -6.32198 1.07252 1.43498 1.43871 1.54668 1.60641 2.07204 2.16533 2.42417 2.99339 3.12684 3.47331 3.63407 3.79210 3.93963 4.10253 4.36789 4.40117 4.45152 4.48806 4.53955 4.64255 4.68490 4.73047 4.81473 4.88452 4.90226 5.06388 5.10807 5.32160 5.33479 5.39155 5.47172 5.53462 5.61497 5.70515 5.79747 5.90628 6.19171 6.80791 6.96882 6.98566 7.36984 7.53948 8.89565 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036008 B = 0.003034 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.422707 B = 9226.199592 C = 9815.860517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.070 4.070 3 H 0.084 0.916 4 C -0.122 4.122 5 C 0.100 3.900 6 N -0.625 5.625 7 C 0.701 3.299 8 O -0.635 6.635 9 N -0.732 5.732 10 C 0.159 3.841 11 C 0.025 3.975 12 C -0.546 4.546 13 H 0.058 0.942 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.964 3.036 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.143 3.857 21 C -0.089 4.089 22 H 0.111 0.889 23 C 0.496 3.504 24 O -0.527 6.527 25 O -0.514 6.514 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.405 0.595 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.266 0.734 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.122 13.057 9.631 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.088 4.088 3 H 0.103 0.897 4 C -0.160 4.160 5 C -0.022 4.022 6 N -0.362 5.362 7 C 0.403 3.597 8 O -0.516 6.516 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.013 4.013 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.191 1.191 20 C 0.019 3.981 21 C -0.109 4.109 22 H 0.128 0.872 23 C 0.338 3.662 24 O -0.417 6.417 25 O -0.328 6.328 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.243 0.757 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -15.857 12.728 9.829 22.585 hybrid contribution 0.330 -0.333 -0.008 0.468 sum -15.527 12.395 9.821 22.163 Atomic orbital electron populations 1.22058 0.93890 1.02001 1.03527 1.20991 0.96841 0.99527 0.91482 0.89726 1.22064 0.93643 1.01710 0.98545 1.22087 0.95240 1.00355 0.84500 1.47220 1.44884 1.35852 1.08264 1.16037 0.79593 0.80163 0.83928 1.90856 1.66977 1.61494 1.32315 1.45402 1.41684 1.44426 1.07409 1.21095 0.87813 0.88863 0.98716 1.19116 0.95677 0.96009 0.90465 1.21462 1.21020 1.22886 0.93071 0.92326 1.25844 0.99302 0.98845 0.95076 1.70049 1.44112 1.44355 0.98023 0.85464 0.78759 0.79030 0.77907 1.19819 1.20539 1.19099 1.21271 0.90599 0.99739 0.86486 1.21511 0.96668 1.01968 0.90741 0.87151 1.23181 0.76725 0.81252 0.85011 1.90656 1.36277 1.27405 1.87360 1.84565 1.71068 1.59955 1.17166 0.91519 0.91174 0.92938 0.91550 0.87409 0.88999 0.89597 0.75657 0.93840 0.93786 0.97294 0.97218 0.92552 0.89556 0.89796 0.70925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.85 71.98 0.64 -1.68 16 2 C -0.07 -1.04 1.87 -10.77 -0.02 -1.06 16 3 H 0.08 1.25 8.13 -2.38 -0.02 1.23 16 4 C -0.12 -1.66 5.38 30.82 0.17 -1.50 16 5 C 0.10 1.72 6.42 86.51 0.56 2.28 16 6 N -0.62 -15.43 2.97 -836.08 -2.48 -17.91 16 7 C 0.70 24.35 8.30 179.05 1.49 25.84 16 8 O -0.63 -27.30 15.77 -3.97 -0.06 -27.36 16 9 N -0.73 -25.76 5.46 -478.54 -2.62 -28.37 16 10 C 0.16 6.91 5.62 86.38 0.49 7.39 16 11 C 0.02 1.24 5.09 29.84 0.15 1.39 16 12 C -0.55 -30.35 9.11 25.60 0.23 -30.11 16 13 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 14 C 0.01 0.45 5.46 84.66 0.46 0.92 16 15 N -0.93 -53.72 13.29 21.45 0.28 -53.43 16 16 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 C 0.14 3.07 5.65 86.36 0.49 3.56 16 21 C -0.09 -1.57 2.33 -11.46 -0.03 -1.60 16 22 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 23 C 0.50 8.78 7.34 71.24 0.52 9.30 16 24 O -0.53 -11.18 14.33 21.96 0.31 -10.87 16 25 O -0.51 -7.47 13.35 -51.46 -0.69 -8.16 16 26 H 0.07 1.21 5.40 -2.39 -0.01 1.20 16 27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.50 5.64 -2.39 -0.01 1.48 16 33 H 0.41 12.10 5.96 -92.71 -0.55 11.55 16 34 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.09 2.28 7.00 -2.39 -0.02 2.26 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.43 2.30 9.10 -74.06 -0.67 1.62 16 Total: -1.00 -71.94 334.28 1.75 -70.19 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -0.17 Total: 15.79 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 5.14 Total: 14.73 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -4.81 Total: -99.72 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -0.43 Total: -46.39 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -71.94 1.75 -70.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518527698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.550 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds