Wall clock time and date at job start Tue Mar 31 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46001 * 2 1 4 4 C 1.53041 * 109.46293 * 119.95223 * 2 1 3 5 5 C 1.53194 * 109.31091 * 58.65916 * 4 2 1 6 6 N 1.47201 * 108.85260 * 54.65062 * 5 4 2 7 7 C 1.34777 * 120.81180 * 126.34436 * 6 5 4 8 8 O 1.21583 * 120.00198 * 354.91250 * 7 6 5 9 9 N 1.34781 * 120.00020 * 174.90792 * 7 6 5 10 10 C 1.46501 * 120.00112 * 184.98394 * 9 7 6 11 11 C 1.53000 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.46609 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00660 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99892 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99819 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00350 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46983 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47187 * 119.99589 * 16 14 12 19 19 H 1.48496 * 109.47066 * 239.99908 * 16 14 12 20 20 C 1.46920 * 118.55840 * 306.47852 * 6 5 4 21 21 C 1.53034 * 109.46660 * 240.02487 * 2 1 3 22 22 H 1.08998 * 109.50639 * 181.38861 * 21 2 1 23 23 C 1.50702 * 109.52313 * 61.30544 * 21 2 1 24 24 O 1.20830 * 120.00058 * 0.15529 * 23 21 2 25 25 O 1.34226 * 119.99999 * 180.14740 * 23 21 2 26 26 H 1.08998 * 109.46494 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46967 * 299.97555 * 1 2 3 28 28 H 1.08996 * 109.47221 * 59.97858 * 1 2 3 29 29 H 1.08997 * 109.50104 * 178.61280 * 4 2 1 30 30 H 1.09001 * 109.49838 * 298.67881 * 4 2 1 31 31 H 1.09000 * 109.58916 * 174.42860 * 5 4 2 32 32 H 1.09004 * 109.58580 * 294.70418 * 5 4 2 33 33 H 0.96996 * 119.99952 * 4.98544 * 9 7 6 34 34 H 1.09007 * 109.46767 * 300.00070 * 10 9 7 35 35 H 1.09002 * 109.47181 * 59.99860 * 10 9 7 36 36 H 1.08994 * 109.46934 * 299.99689 * 11 10 9 37 37 H 1.08997 * 109.46935 * 60.00503 * 11 10 9 38 38 H 0.97001 * 120.00263 * 180.02562 * 15 14 12 39 39 H 1.09008 * 109.58722 * 293.68289 * 20 6 5 40 40 H 1.09004 * 109.59155 * 173.39690 * 20 6 5 41 41 H 0.96701 * 116.99964 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7204 1.2502 5 6 1.4997 -2.1539 1.2647 6 7 1.8628 -2.8118 -0.0011 7 6 2.5166 -3.9904 -0.0037 8 8 2.8953 -4.4780 1.0437 9 7 2.7505 -4.6287 -1.1676 10 6 3.3629 -5.9595 -1.1630 11 6 3.5175 -6.4547 -2.6023 12 6 4.1481 -7.8235 -2.5975 13 1 4.4118 -8.2934 -1.6616 14 6 4.3884 -8.4759 -3.7882 15 7 4.0669 -7.9040 -4.9280 16 14 5.1694 -10.1728 -3.7824 17 1 5.4330 -10.5916 -2.3822 18 1 4.2478 -11.1440 -4.4247 19 1 6.4485 -10.1316 -4.5354 20 6 1.4998 -2.1544 -1.2638 21 6 2.0400 -0.7209 -1.2499 22 1 3.1297 -0.7429 -1.2382 23 6 1.5649 0.0076 -2.4806 24 8 0.8897 1.0036 -2.3702 25 8 1.8917 -0.4499 -3.6994 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5134 0.8901 28 1 -0.3633 0.5141 -0.8897 29 1 3.1296 -0.7424 1.2385 30 1 1.6962 -0.1927 2.1399 31 1 1.9383 -2.7013 2.0990 32 1 0.4150 -2.1345 1.3703 33 1 2.5133 -4.2069 -2.0082 34 1 4.3436 -5.9065 -0.6900 35 1 2.7282 -6.6497 -0.6071 36 1 2.5371 -6.5076 -3.0756 37 1 4.1525 -5.7645 -3.1577 38 1 4.2356 -8.3631 -5.7656 39 1 0.4148 -2.1350 -1.3669 40 1 1.9365 -2.7013 -2.0994 41 1 1.5641 0.0512 -4.4588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518527700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:49 Heat of formation + Delta-G solvation = -127.698718 kcal Electronic energy + Delta-G solvation = -23050.159595 eV Core-core repulsion = 19543.810380 eV Total energy + Delta-G solvation = -3506.349215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22417 -39.88615 -37.92421 -36.36689 -34.92282 -33.69505 -32.78824 -31.75866 -29.55047 -28.01168 -25.36376 -24.91129 -24.10963 -22.15192 -21.00363 -20.21538 -18.81885 -18.32242 -17.89838 -16.76849 -16.61979 -16.25926 -15.56538 -15.33732 -15.05703 -14.64915 -14.48772 -13.96191 -13.93775 -13.85054 -13.43036 -12.90755 -12.73287 -12.30194 -12.27283 -11.98126 -11.84598 -11.53527 -11.27340 -11.12787 -11.08788 -11.01425 -10.89041 -10.60762 -10.43471 -10.32589 -9.90678 -9.54678 -9.24326 -8.77987 -8.46655 -8.22176 -6.08778 -4.11238 1.86841 2.62543 2.92066 3.29005 3.36708 3.42035 3.48318 4.14095 4.19516 4.40716 4.43992 4.59478 4.76462 4.88322 5.08668 5.10690 5.16076 5.28546 5.31278 5.46310 5.47270 5.51575 5.72465 5.81272 5.84601 5.96867 6.10408 6.24573 6.34416 6.39893 6.51180 6.77267 6.97675 7.11339 7.56033 7.62061 7.63616 7.90421 8.23239 8.34545 8.90384 8.96429 9.53580 11.02921 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.003667 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.562156 B = 7632.939060 C = 8677.504643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.073 4.073 3 H 0.081 0.919 4 C -0.129 4.129 5 C 0.126 3.874 6 N -0.633 5.633 7 C 0.704 3.296 8 O -0.592 6.592 9 N -0.738 5.738 10 C 0.139 3.861 11 C 0.012 3.988 12 C -0.520 4.520 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.123 3.877 21 C -0.093 4.093 22 H 0.115 0.885 23 C 0.487 3.513 24 O -0.509 6.509 25 O -0.511 6.511 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.392 0.608 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 18.455 6.174 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.092 4.092 3 H 0.099 0.901 4 C -0.168 4.168 5 C 0.003 3.997 6 N -0.372 5.372 7 C 0.406 3.594 8 O -0.470 6.470 9 N -0.394 5.394 10 C 0.016 3.984 11 C -0.025 4.025 12 C -0.558 4.558 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.002 4.002 21 C -0.114 4.114 22 H 0.133 0.867 23 C 0.329 3.671 24 O -0.397 6.397 25 O -0.322 6.322 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.228 0.772 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.910 18.034 7.130 20.586 hybrid contribution 0.136 -0.253 -1.215 1.248 sum -6.774 17.780 5.915 19.925 Atomic orbital electron populations 1.22161 0.94311 1.02254 1.03400 1.20959 0.97044 0.99204 0.91992 0.90069 1.21993 1.01566 0.95723 0.97500 1.21528 0.99599 0.92142 0.86466 1.47280 1.61956 1.21707 1.06220 1.15932 0.78558 0.79999 0.84921 1.90881 1.57335 1.67642 1.31187 1.45744 1.66316 1.20907 1.06408 1.21621 0.96333 0.79202 1.01249 1.19330 0.97693 0.96560 0.88920 1.21090 1.40516 1.01375 0.92860 0.92155 1.24992 0.95618 0.98177 0.95495 1.69967 1.47794 1.38161 0.97403 0.86463 0.78948 0.83952 0.78245 1.19563 1.20961 1.20961 1.21461 1.00573 0.90417 0.87748 1.21506 1.03561 0.96182 0.90106 0.86690 1.23280 0.76387 0.82728 0.84697 1.90675 1.36065 1.25858 1.87140 1.84585 1.72768 1.58090 1.16787 0.92377 0.92332 0.90566 0.91083 0.89993 0.88558 0.91491 0.77174 0.92647 0.92778 0.95982 0.95939 0.92932 0.90602 0.88829 0.72902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.13 37.16 0.30 -1.09 16 2 C -0.07 -0.62 2.35 -90.58 -0.21 -0.84 16 3 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 4 C -0.13 -1.09 5.63 -26.61 -0.15 -1.24 16 5 C 0.13 1.35 5.98 -3.56 -0.02 1.33 16 6 N -0.63 -8.16 2.98 -178.27 -0.53 -8.69 16 7 C 0.70 12.30 8.30 -86.91 -0.72 11.58 16 8 O -0.59 -12.53 15.79 5.29 0.08 -12.44 16 9 N -0.74 -13.12 5.47 -65.22 -0.36 -13.47 16 10 C 0.14 2.97 5.62 -4.04 -0.02 2.95 16 11 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 12 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 16 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 C 0.12 1.27 5.12 -3.71 -0.02 1.25 16 21 C -0.09 -0.86 2.56 -91.65 -0.23 -1.09 16 22 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 23 C 0.49 4.63 7.34 36.01 0.26 4.90 16 24 O -0.51 -5.84 14.51 -18.75 -0.27 -6.12 16 25 O -0.51 -4.14 13.35 -39.25 -0.52 -4.66 16 26 H 0.06 0.49 4.98 -51.93 -0.26 0.24 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.75 5.64 -51.93 -0.29 0.46 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.21 7.01 -51.93 -0.36 0.84 16 32 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 33 H 0.39 6.12 5.96 -40.82 -0.24 5.87 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 39 H 0.08 0.72 6.69 -51.92 -0.35 0.37 16 40 H 0.09 1.00 5.64 -51.93 -0.29 0.70 16 41 H 0.41 1.65 9.10 45.56 0.41 2.06 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -33.67 327.92 -7.39 -41.06 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.08 Total: 3.56 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.37 Total: 4.78 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.15 Total: -47.39 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.71 Total: -23.22 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.67 -7.39 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518527700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.641 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds