Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.45924 * 2 1 4 4 C 1.53036 * 109.46061 * 240.02778 * 2 1 3 5 5 C 1.53195 * 109.31276 * 301.35465 * 4 2 1 6 6 N 1.46922 * 108.77709 * 305.36451 * 5 4 2 7 7 C 1.34777 * 120.63459 * 233.58741 * 6 5 4 8 8 O 1.21589 * 119.99691 * 354.95995 * 7 6 5 9 9 N 1.34774 * 120.00054 * 175.23946 * 7 6 5 10 10 C 1.46501 * 119.99702 * 185.00570 * 9 7 6 11 11 C 1.53003 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47145 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99632 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00182 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00317 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00096 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47078 * 60.00123 * 16 14 12 18 18 H 1.48501 * 109.47126 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47306 * 300.00519 * 16 14 12 20 20 C 1.46933 * 118.73482 * 53.85830 * 6 5 4 21 21 C 1.53033 * 109.45225 * 119.96275 * 2 1 3 22 22 H 1.09001 * 109.50400 * 178.60063 * 21 2 1 23 23 C 1.50700 * 109.49828 * 298.66666 * 21 2 1 24 24 O 1.20826 * 119.99933 * 359.97438 * 23 21 2 25 25 O 1.34238 * 119.99809 * 179.97438 * 23 21 2 26 26 H 1.09003 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47219 * 299.97149 * 1 2 3 28 28 H 1.08995 * 109.47246 * 59.97709 * 1 2 3 29 29 H 1.09005 * 109.50034 * 181.40224 * 4 2 1 30 30 H 1.08999 * 109.52462 * 61.32219 * 4 2 1 31 31 H 1.09003 * 109.58651 * 185.57903 * 5 4 2 32 32 H 1.08996 * 109.69954 * 65.22226 * 5 4 2 33 33 H 0.97000 * 119.99863 * 5.00913 * 9 7 6 34 34 H 1.08997 * 109.47447 * 300.00045 * 10 9 7 35 35 H 1.08999 * 109.47031 * 60.00465 * 10 9 7 36 36 H 1.09005 * 109.46890 * 299.99847 * 11 10 9 37 37 H 1.08994 * 109.47636 * 59.99946 * 11 10 9 38 38 H 0.96994 * 120.00474 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.58622 * 65.92997 * 20 6 5 40 40 H 1.09002 * 109.58627 * 186.35373 * 20 6 5 41 41 H 0.96700 * 116.99727 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.4993 -2.1542 -1.2641 6 7 1.8621 -2.8089 0.0002 7 6 2.5150 -3.9880 0.0003 8 8 2.7285 -4.5648 -1.0485 9 7 2.9263 -4.5304 1.1636 10 6 3.7306 -5.7548 1.1569 11 6 4.0611 -6.1557 2.5960 12 6 4.8891 -7.4148 2.5892 13 1 5.1536 -7.8821 1.6520 14 6 5.3099 -7.9696 3.7791 15 7 4.9884 -7.4004 4.9202 16 14 6.3356 -9.5308 3.7707 17 1 7.5951 -9.2915 3.0212 18 1 6.6565 -9.9198 5.1675 19 1 5.5703 -10.6225 3.1166 20 6 1.4941 -2.1568 1.2644 21 6 2.0396 -0.7207 1.2501 22 1 3.1293 -0.7430 1.2385 23 6 1.5645 0.0090 2.4802 24 8 0.8880 1.0039 2.3689 25 8 1.8930 -0.4465 3.6995 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5134 0.8903 28 1 -0.3633 0.5142 -0.8897 29 1 3.1296 -0.7431 -1.2381 30 1 1.6963 -0.1937 -2.1401 31 1 1.9380 -2.7020 -2.0982 32 1 0.4145 -2.1368 -1.3685 33 1 2.6896 -4.1101 2.0051 34 1 3.1689 -6.5560 0.6768 35 1 4.6551 -5.5791 0.6069 36 1 4.6228 -5.3545 3.0765 37 1 3.1365 -6.3314 3.1457 38 1 5.2841 -7.7909 5.7574 39 1 0.4088 -2.1374 1.3632 40 1 1.9293 -2.7062 2.0992 41 1 1.5647 0.0548 4.4584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518527731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -127.229883 kcal Electronic energy + Delta-G solvation = -23078.244350 eV Core-core repulsion = 19571.915465 eV Total energy + Delta-G solvation = -3506.328884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21640 -39.89137 -37.91720 -36.35690 -34.92689 -33.69345 -32.79229 -31.73840 -29.54408 -28.00880 -25.36694 -24.91602 -24.09965 -22.14442 -21.00301 -20.21018 -18.80405 -18.31474 -17.91856 -16.74361 -16.61284 -16.25862 -15.58969 -15.36282 -14.99765 -14.63847 -14.49746 -14.00761 -13.92584 -13.83585 -13.42894 -12.90125 -12.71306 -12.29672 -12.26004 -11.97429 -11.84830 -11.52761 -11.27386 -11.12695 -11.08691 -10.98733 -10.89405 -10.63781 -10.42796 -10.30976 -9.91396 -9.54031 -9.27076 -8.78155 -8.45684 -8.21858 -6.08210 -4.10942 1.87830 2.63576 2.93182 3.32134 3.35898 3.39449 3.48150 4.14220 4.18670 4.40590 4.44047 4.60169 4.76514 4.88353 5.09192 5.11161 5.16940 5.28862 5.30721 5.46387 5.48148 5.52258 5.72698 5.80996 5.84938 5.96956 6.10817 6.24790 6.35129 6.39949 6.52050 6.77327 6.97668 7.11126 7.55831 7.63123 7.63828 7.90566 8.23312 8.34609 8.90209 8.96241 9.53761 11.03391 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022222 B = 0.003728 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.690894 B = 7509.409715 C = 8571.499766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.073 4.073 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.126 3.874 6 N -0.633 5.633 7 C 0.704 3.296 8 O -0.592 6.592 9 N -0.738 5.738 10 C 0.138 3.862 11 C 0.013 3.987 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.123 3.877 21 C -0.094 4.094 22 H 0.116 0.884 23 C 0.487 3.513 24 O -0.510 6.510 25 O -0.510 6.510 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.392 0.608 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 17.456 -6.101 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.092 4.092 3 H 0.099 0.901 4 C -0.168 4.168 5 C 0.003 3.997 6 N -0.371 5.371 7 C 0.405 3.595 8 O -0.470 6.470 9 N -0.394 5.394 10 C 0.016 3.984 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.001 4.001 21 C -0.114 4.114 22 H 0.134 0.866 23 C 0.329 3.671 24 O -0.398 6.398 25 O -0.322 6.322 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.228 0.772 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -8.764 17.001 -7.046 20.384 hybrid contribution 0.286 -0.179 1.184 1.231 sum -8.478 16.822 -5.863 19.729 Atomic orbital electron populations 1.22165 0.94334 1.02227 1.03401 1.20955 0.97027 0.99211 0.92000 0.90060 1.22001 1.01555 0.95721 0.97522 1.21478 0.99689 0.92091 0.86446 1.47227 1.61950 1.21729 1.06241 1.15944 0.78282 0.80295 0.84935 1.90884 1.62874 1.62213 1.31063 1.45745 1.57183 1.30087 1.06392 1.21620 0.92725 0.82806 1.01263 1.19320 0.97224 0.96966 0.88913 1.21012 1.33004 1.09215 0.92781 0.92270 1.24982 0.96189 0.97558 0.95479 1.69943 1.45904 1.40091 0.97389 0.86577 0.80701 0.83323 0.76953 1.20115 1.21269 1.20112 1.21566 1.00425 0.90447 0.87698 1.21596 1.03594 0.96131 0.90065 0.86605 1.23297 0.76390 0.82722 0.84707 1.90672 1.36059 1.25921 1.87132 1.84592 1.72683 1.58145 1.16778 0.92403 0.90557 0.92344 0.91085 0.89988 0.88591 0.91559 0.77158 0.92642 0.92794 0.95967 0.95975 0.92814 0.90562 0.88782 0.72924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.13 37.16 0.30 -1.09 16 2 C -0.07 -0.63 2.35 -90.59 -0.21 -0.84 16 3 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 4 C -0.13 -1.10 5.63 -26.61 -0.15 -1.25 16 5 C 0.13 1.36 5.94 -3.71 -0.02 1.34 16 6 N -0.63 -8.16 2.97 -178.23 -0.53 -8.69 16 7 C 0.70 12.29 8.29 -86.92 -0.72 11.57 16 8 O -0.59 -12.54 15.79 5.29 0.08 -12.45 16 9 N -0.74 -13.11 5.47 -65.22 -0.36 -13.46 16 10 C 0.14 2.96 5.62 -4.04 -0.02 2.94 16 11 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 12 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 16 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.12 1.28 5.21 -3.48 -0.02 1.26 16 21 C -0.09 -0.87 2.57 -91.43 -0.24 -1.10 16 22 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 23 C 0.49 4.66 7.34 36.01 0.26 4.93 16 24 O -0.51 -5.88 14.51 -18.75 -0.27 -6.15 16 25 O -0.51 -4.19 13.36 -39.28 -0.52 -4.71 16 26 H 0.06 0.49 4.97 -51.93 -0.26 0.23 16 27 H 0.08 0.76 5.63 -51.93 -0.29 0.46 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.20 7.04 -51.93 -0.37 0.84 16 32 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 33 H 0.39 6.11 5.93 -40.82 -0.24 5.87 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.08 0.72 6.69 -51.93 -0.35 0.37 16 40 H 0.09 1.00 5.57 -51.93 -0.29 0.71 16 41 H 0.41 1.69 9.10 45.56 0.41 2.10 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -33.61 327.84 -7.38 -40.99 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.07 Total: 3.69 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.37 Total: 4.79 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.15 Total: -47.37 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.71 Total: -23.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.61 -7.38 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518527731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.236 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds