Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.45924 * 2 1 4 4 C 1.53036 * 109.46061 * 240.02778 * 2 1 3 5 5 C 1.53195 * 109.31276 * 301.35465 * 4 2 1 6 6 N 1.46922 * 108.77709 * 305.36451 * 5 4 2 7 7 C 1.34777 * 120.63459 * 233.58741 * 6 5 4 8 8 O 1.21589 * 119.99691 * 354.95995 * 7 6 5 9 9 N 1.34774 * 120.00054 * 175.23946 * 7 6 5 10 10 C 1.46501 * 119.99702 * 185.00570 * 9 7 6 11 11 C 1.53003 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47145 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99632 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00182 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00317 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00096 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47078 * 60.00123 * 16 14 12 18 18 H 1.48501 * 109.47126 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47306 * 300.00519 * 16 14 12 20 20 C 1.46933 * 118.73482 * 53.85830 * 6 5 4 21 21 C 1.53033 * 109.45225 * 119.96275 * 2 1 3 22 22 H 1.09001 * 109.50400 * 178.60063 * 21 2 1 23 23 C 1.50700 * 109.49828 * 298.66666 * 21 2 1 24 24 O 1.20826 * 119.99933 * 359.97438 * 23 21 2 25 25 O 1.34238 * 119.99809 * 179.97438 * 23 21 2 26 26 H 1.09003 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47219 * 299.97149 * 1 2 3 28 28 H 1.08995 * 109.47246 * 59.97709 * 1 2 3 29 29 H 1.09005 * 109.50034 * 181.40224 * 4 2 1 30 30 H 1.08999 * 109.52462 * 61.32219 * 4 2 1 31 31 H 1.09003 * 109.58651 * 185.57903 * 5 4 2 32 32 H 1.08996 * 109.69954 * 65.22226 * 5 4 2 33 33 H 0.97000 * 119.99863 * 5.00913 * 9 7 6 34 34 H 1.08997 * 109.47447 * 300.00045 * 10 9 7 35 35 H 1.08999 * 109.47031 * 60.00465 * 10 9 7 36 36 H 1.09005 * 109.46890 * 299.99847 * 11 10 9 37 37 H 1.08994 * 109.47636 * 59.99946 * 11 10 9 38 38 H 0.96994 * 120.00474 * 179.97438 * 15 14 12 39 39 H 1.08996 * 109.58622 * 65.92997 * 20 6 5 40 40 H 1.09002 * 109.58627 * 186.35373 * 20 6 5 41 41 H 0.96700 * 116.99727 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 1.4993 -2.1542 -1.2641 6 7 1.8621 -2.8089 0.0002 7 6 2.5150 -3.9880 0.0003 8 8 2.7285 -4.5648 -1.0485 9 7 2.9263 -4.5304 1.1636 10 6 3.7306 -5.7548 1.1569 11 6 4.0611 -6.1557 2.5960 12 6 4.8891 -7.4148 2.5892 13 1 5.1536 -7.8821 1.6520 14 6 5.3099 -7.9696 3.7791 15 7 4.9884 -7.4004 4.9202 16 14 6.3356 -9.5308 3.7707 17 1 7.5951 -9.2915 3.0212 18 1 6.6565 -9.9198 5.1675 19 1 5.5703 -10.6225 3.1166 20 6 1.4941 -2.1568 1.2644 21 6 2.0396 -0.7207 1.2501 22 1 3.1293 -0.7430 1.2385 23 6 1.5645 0.0090 2.4802 24 8 0.8880 1.0039 2.3689 25 8 1.8930 -0.4465 3.6995 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5134 0.8903 28 1 -0.3633 0.5142 -0.8897 29 1 3.1296 -0.7431 -1.2381 30 1 1.6963 -0.1937 -2.1401 31 1 1.9380 -2.7020 -2.0982 32 1 0.4145 -2.1368 -1.3685 33 1 2.6896 -4.1101 2.0051 34 1 3.1689 -6.5560 0.6768 35 1 4.6551 -5.5791 0.6069 36 1 4.6228 -5.3545 3.0765 37 1 3.1365 -6.3314 3.1457 38 1 5.2841 -7.7909 5.7574 39 1 0.4088 -2.1374 1.3632 40 1 1.9293 -2.7062 2.0992 41 1 1.5647 0.0548 4.4584 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518527731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -150.637246 kcal Electronic energy + Delta-G solvation = -23079.259369 eV Core-core repulsion = 19571.915465 eV Total energy + Delta-G solvation = -3507.343904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.09642 -41.00331 -38.93500 -37.12751 -36.61758 -35.02518 -34.43906 -32.67086 -31.29563 -28.85786 -26.89007 -25.93602 -25.27133 -23.24061 -22.55823 -21.41606 -19.87805 -19.11416 -18.88923 -18.48567 -17.58058 -17.40818 -16.83224 -16.56929 -16.44239 -15.88334 -15.49552 -15.27950 -15.22895 -14.93585 -14.34740 -14.27729 -14.24776 -13.61367 -13.17141 -13.00135 -12.90902 -12.71320 -12.62505 -12.51451 -12.31528 -12.22493 -12.01907 -11.83748 -11.67863 -11.62745 -11.42987 -11.19142 -11.11363 -10.57626 -10.16107 -9.49940 -8.21428 -6.31636 1.10911 1.43742 1.46093 1.53440 1.61337 2.08767 2.12659 2.42892 2.95945 3.13458 3.41044 3.61499 3.84784 3.99365 4.11093 4.28576 4.35388 4.41743 4.48294 4.53547 4.56894 4.71661 4.76103 4.78954 4.88612 4.94324 5.09894 5.17240 5.28266 5.32052 5.42695 5.48766 5.55171 5.61758 5.70578 5.80361 5.90320 6.19481 6.81080 6.94761 6.99846 7.37530 7.53447 8.90245 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022222 B = 0.003728 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.690894 B = 7509.409715 C = 8571.499766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 H 0.086 0.914 4 C -0.119 4.119 5 C 0.121 3.879 6 N -0.622 5.622 7 C 0.702 3.298 8 O -0.632 6.632 9 N -0.735 5.735 10 C 0.159 3.841 11 C 0.025 3.975 12 C -0.547 4.547 13 H 0.059 0.941 14 C 0.009 3.991 15 N -0.926 5.926 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.269 1.269 20 C 0.121 3.879 21 C -0.092 4.092 22 H 0.117 0.883 23 C 0.494 3.506 24 O -0.529 6.529 25 O -0.513 6.513 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.404 0.596 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.266 0.734 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 18.151 -6.335 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.088 4.088 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.001 4.001 6 N -0.359 5.359 7 C 0.404 3.596 8 O -0.514 6.514 9 N -0.392 5.392 10 C 0.035 3.965 11 C -0.013 4.013 12 C -0.586 4.586 13 H 0.077 0.923 14 C -0.190 4.190 15 N -0.565 5.565 16 Si 0.788 3.212 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.194 1.194 20 C -0.002 4.002 21 C -0.112 4.112 22 H 0.135 0.865 23 C 0.337 3.663 24 O -0.419 6.419 25 O -0.327 6.327 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.242 0.758 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -9.038 17.753 -7.254 21.201 hybrid contribution 0.312 -0.326 1.291 1.367 sum -8.726 17.427 -5.964 20.382 Atomic orbital electron populations 1.22110 0.94017 1.02139 1.03404 1.20945 0.97178 0.99254 0.91426 0.89600 1.21944 1.01106 0.94127 0.98583 1.21694 1.00771 0.92935 0.84693 1.47223 1.60373 1.20230 1.08123 1.16033 0.78420 0.81275 0.83899 1.90855 1.64550 1.63714 1.32275 1.45448 1.57065 1.29251 1.07398 1.21099 0.92697 0.83986 0.98707 1.19118 0.95903 0.95786 0.90487 1.21436 1.33657 1.10417 0.93053 0.92272 1.25834 0.97267 1.00813 0.95048 1.70046 1.46876 1.41618 0.97978 0.85524 0.79155 0.79280 0.77238 1.19342 1.20625 1.19419 1.21708 1.01380 0.90909 0.86212 1.21572 1.03663 0.95265 0.90675 0.86504 1.23207 0.75816 0.82279 0.85042 1.90675 1.36954 1.26796 1.87457 1.84560 1.72551 1.58454 1.17143 0.92454 0.91855 0.91073 0.91691 0.87578 0.90477 0.89740 0.75839 0.93816 0.93650 0.97248 0.97397 0.92563 0.89039 0.89145 0.70874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.13 71.98 0.59 -1.74 16 2 C -0.07 -1.03 2.35 -10.77 -0.03 -1.06 16 3 H 0.09 1.27 8.07 -2.38 -0.02 1.25 16 4 C -0.12 -1.76 5.63 30.67 0.17 -1.58 16 5 C 0.12 2.44 5.94 86.36 0.51 2.95 16 6 N -0.62 -15.40 2.97 -836.05 -2.48 -17.88 16 7 C 0.70 24.41 8.29 179.06 1.49 25.89 16 8 O -0.63 -27.05 15.79 -4.00 -0.06 -27.12 16 9 N -0.73 -26.14 5.47 -478.53 -2.62 -28.76 16 10 C 0.16 6.93 5.62 86.38 0.49 7.41 16 11 C 0.02 1.24 5.09 29.85 0.15 1.39 16 12 C -0.55 -30.47 9.11 25.60 0.23 -30.24 16 13 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 14 C 0.01 0.52 5.46 84.65 0.46 0.98 16 15 N -0.93 -53.88 13.29 21.45 0.28 -53.59 16 16 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C 0.12 2.34 5.21 86.51 0.45 2.79 16 21 C -0.09 -1.54 2.57 -11.32 -0.03 -1.57 16 22 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 23 C 0.49 8.66 7.34 71.24 0.52 9.18 16 24 O -0.53 -11.37 14.51 21.96 0.32 -11.05 16 25 O -0.51 -7.61 13.36 -51.49 -0.69 -8.30 16 26 H 0.06 0.83 4.97 -2.39 -0.01 0.82 16 27 H 0.06 1.13 5.63 -2.39 -0.01 1.12 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.89 7.04 -2.39 -0.02 1.88 16 32 H 0.08 1.42 6.70 -2.39 -0.02 1.40 16 33 H 0.40 12.48 5.93 -92.71 -0.55 11.93 16 34 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 39 H 0.09 1.54 6.69 -2.39 -0.02 1.52 16 40 H 0.09 1.82 5.57 -2.39 -0.01 1.81 16 41 H 0.43 2.81 9.10 -74.06 -0.67 2.14 16 Total: -1.00 -71.54 327.84 1.63 -69.91 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.16 Total: 16.99 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 5.01 Total: 14.40 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -4.81 Total: -100.23 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.43 Total: -46.46 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -71.54 1.63 -69.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518527731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.727 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds