Wall clock time and date at job start Tue Mar 31 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00406 * 2 1 4 4 H 1.48503 * 109.47115 * 239.99492 * 3 2 1 5 5 H 1.48492 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47258 * 119.99803 * 3 2 1 7 7 C 1.38818 * 119.99415 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99592 * 201.58761 * 7 2 1 9 9 N 1.36934 * 120.00237 * 21.58362 * 7 2 1 10 10 C 1.46495 * 120.00051 * 36.74809 * 9 7 2 11 11 C 1.50701 * 109.47477 * 89.99584 * 10 9 7 12 12 C 1.38826 * 119.67042 * 270.02891 * 11 10 9 13 13 C 1.36628 * 120.53031 * 180.02562 * 12 11 10 14 14 C 1.39626 * 119.76135 * 359.97005 * 13 12 11 15 15 C 1.46483 * 134.03106 * 180.02562 * 14 13 12 16 16 C 1.34252 * 106.99572 * 179.17251 * 15 14 13 17 17 N 1.36830 * 109.92657 * 0.74017 * 16 15 14 18 18 H 0.97002 * 125.06197 * 179.32717 * 17 16 15 19 19 C 1.37691 * 109.87225 * 359.34984 * 17 16 15 20 20 C 1.37745 * 119.66172 * 89.99847 * 11 10 9 21 21 C 1.46493 * 120.00111 * 216.74768 * 9 7 2 22 22 C 1.54268 * 110.03608 * 62.53358 * 21 9 7 23 23 C 1.54962 * 104.16384 * 217.13638 * 22 21 9 24 24 C 1.54894 * 102.77592 * 37.88684 * 23 22 21 25 25 C 1.53880 * 110.03489 * 305.31636 * 21 9 7 26 26 H 0.97002 * 119.99656 * 354.92091 * 1 2 3 27 27 H 1.09007 * 109.46970 * 330.00182 * 10 9 7 28 28 H 1.08996 * 109.47406 * 210.00002 * 10 9 7 29 29 H 1.08000 * 119.73487 * 359.97438 * 12 11 10 30 30 H 1.07995 * 120.12017 * 179.97438 * 13 12 11 31 31 H 1.08003 * 126.50386 * 359.96579 * 15 14 13 32 32 H 1.08003 * 125.03560 * 180.08862 * 16 15 14 33 33 H 1.08002 * 120.11348 * 0.02562 * 20 11 10 34 34 H 1.08998 * 110.02193 * 183.92348 * 21 9 7 35 35 H 1.09004 * 110.48433 * 335.78742 * 22 21 9 36 36 H 1.08998 * 110.48945 * 98.42287 * 22 21 9 37 37 H 1.08994 * 110.72010 * 279.57304 * 23 22 21 38 38 H 1.09004 * 110.92238 * 156.29064 * 23 22 21 39 39 H 1.09000 * 110.48865 * 203.40425 * 24 23 22 40 40 H 1.09003 * 110.59912 * 80.81425 * 24 23 22 41 41 H 1.09003 * 110.03289 * 238.57114 * 25 21 9 42 42 H 1.09004 * 110.02466 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0333 -1.2349 0.3447 9 7 1.3974 -2.3467 -0.4352 10 6 0.4620 -2.2936 -1.5614 11 6 1.2142 -2.5063 -2.8498 12 6 1.7363 -1.4139 -3.5291 13 6 2.4208 -1.5865 -4.6989 14 6 2.5975 -2.8716 -5.2154 15 6 3.2584 -3.4077 -6.4077 16 6 3.1174 -4.7422 -6.3680 17 7 2.4061 -5.1030 -5.2562 18 1 2.1694 -6.0129 -5.0172 19 6 2.0759 -3.9823 -4.5276 20 6 1.3774 -3.7827 -3.3411 21 6 1.6773 -3.6243 0.2248 22 6 1.2262 -3.5676 1.6990 23 6 2.3072 -4.3781 2.4578 24 6 3.6110 -3.9850 1.7196 25 6 3.1929 -3.8901 0.2378 26 1 -0.4850 0.8368 0.0744 27 1 -0.0263 -1.3192 -1.5824 28 1 -0.2898 -3.0744 -1.4464 29 1 1.5995 -0.4197 -3.1301 30 1 2.8237 -0.7320 -5.2221 31 1 3.7736 -2.8385 -7.1674 32 1 3.4990 -5.4283 -7.1096 33 1 0.9676 -4.6261 -2.8052 34 1 1.1609 -4.4327 -0.2927 35 1 1.2048 -2.5365 2.0520 36 1 0.2473 -4.0323 1.8166 37 1 2.1204 -5.4482 2.3685 38 1 2.3521 -4.0813 3.5057 39 1 4.3716 -4.7543 1.8528 40 1 3.9775 -3.0219 2.0751 41 1 3.4119 -4.8278 -0.2728 42 1 3.7201 -3.0686 -0.2475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529529448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:07 Heat of formation + Delta-G solvation = 68.787342 kcal Electronic energy + Delta-G solvation = -22661.503389 eV Core-core repulsion = 19606.816463 eV Total energy + Delta-G solvation = -3054.686925 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68688 -37.87099 -36.53444 -34.04360 -31.68926 -30.82978 -29.07286 -28.70686 -27.81999 -26.53147 -25.17539 -22.62573 -21.92473 -20.30520 -20.02070 -19.86831 -19.04475 -17.43646 -16.28982 -15.60791 -15.25638 -14.69410 -14.44324 -14.11964 -14.01798 -13.64306 -13.38042 -13.17811 -12.91835 -12.69922 -12.50913 -12.12173 -11.25587 -11.19035 -11.12354 -10.85367 -10.77355 -10.50568 -10.40730 -10.31169 -10.25188 -10.18727 -10.01851 -9.82288 -9.77403 -9.47162 -9.18047 -8.45214 -7.52951 -7.19118 -6.49593 -5.78689 -3.29374 1.72661 2.32086 3.11182 3.38279 3.44535 3.48041 3.49380 4.46428 4.60457 5.09755 5.29128 5.31334 5.44523 5.48914 5.50141 5.60962 5.81596 5.83126 5.95170 6.02769 6.12075 6.16342 6.30412 6.34050 6.40025 6.46628 6.50691 6.58506 6.61847 6.65305 6.68438 6.83580 6.89767 7.01185 7.15665 7.20242 7.24304 7.28654 7.40384 7.51301 7.72534 7.82319 7.89875 7.92198 8.57726 9.21803 9.85228 10.43146 11.24150 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.006613 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.201101 B = 4233.054063 C = 5533.870245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.014 3.986 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.060 0.940 9 N -0.567 5.567 10 C 0.174 3.826 11 C -0.042 4.042 12 C -0.114 4.114 13 C -0.085 4.085 14 C -0.127 4.127 15 C -0.205 4.205 16 C 0.031 3.969 17 N -0.603 5.603 18 H 0.409 0.591 19 C 0.095 3.905 20 C -0.141 4.141 21 C 0.174 3.826 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.132 4.132 26 H 0.256 0.744 27 H 0.107 0.893 28 H 0.031 0.969 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.161 0.839 33 H 0.107 0.893 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 -9.266 -6.804 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.186 4.186 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.375 4.375 8 H 0.078 0.922 9 N -0.285 5.285 10 C 0.048 3.952 11 C -0.046 4.046 12 C -0.134 4.134 13 C -0.104 4.104 14 C -0.131 4.131 15 C -0.231 4.231 16 C -0.095 4.095 17 N -0.207 5.207 18 H 0.244 0.756 19 C -0.011 4.011 20 C -0.163 4.163 21 C 0.067 3.933 22 C -0.170 4.170 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.171 4.171 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.050 0.950 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.155 0.845 32 H 0.178 0.822 33 H 0.125 0.875 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.472 -9.219 -6.828 11.986 hybrid contribution 0.553 0.380 0.043 0.672 sum 4.025 -8.838 -6.784 11.847 Atomic orbital electron populations 1.69867 1.05459 1.26028 1.51793 1.25108 0.94950 0.98360 1.00147 0.86564 0.79338 0.83692 0.78453 1.20713 1.21675 1.20857 1.18854 0.94478 0.85092 1.39059 0.92201 1.43839 1.51496 1.02875 1.30261 1.20099 0.90091 1.03351 0.81680 1.20979 0.96405 0.90961 0.96280 1.20661 0.98865 0.99417 0.94412 1.20217 0.99323 0.94522 0.96360 1.19077 1.04304 0.93011 0.96735 1.21613 1.08264 0.93287 0.99975 1.21594 1.00154 0.96263 0.91506 1.41715 1.49697 1.07731 1.21509 0.75575 1.18315 1.01444 0.86066 0.95235 1.19868 1.04235 0.97511 0.94659 1.21014 0.92432 0.88300 0.91596 1.22825 0.95954 1.01112 0.97070 1.22441 0.96445 0.98835 0.98422 1.22248 0.96552 1.00204 0.96495 1.22547 0.99149 1.00179 0.95254 0.93362 0.87521 0.95049 0.86148 0.87136 0.84498 0.82212 0.87475 0.93638 0.89670 0.93712 0.92990 0.92896 0.93557 0.91962 0.94065 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 11.42 55.49 0.63 -23.64 16 2 C 0.01 0.37 4.96 -17.43 -0.09 0.29 16 3 Si 0.89 21.03 29.61 -169.99 -5.03 16.00 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.28 7.80 -15.06 -0.12 -6.39 16 8 H 0.06 1.58 6.93 -52.49 -0.36 1.21 16 9 N -0.57 -13.24 2.37 -165.75 -0.39 -13.63 16 10 C 0.17 3.95 5.36 -5.20 -0.03 3.92 16 11 C -0.04 -0.87 5.46 -104.58 -0.57 -1.44 16 12 C -0.11 -2.36 9.61 -39.95 -0.38 -2.75 16 13 C -0.09 -1.60 10.05 -39.65 -0.40 -1.99 16 14 C -0.13 -2.28 6.37 -105.14 -0.67 -2.95 16 15 C -0.21 -3.01 11.08 -37.67 -0.42 -3.43 16 16 C 0.03 0.38 11.82 -16.73 -0.20 0.18 16 17 N -0.60 -8.17 6.07 -10.65 -0.06 -8.23 16 18 H 0.41 4.23 8.96 -40.82 -0.37 3.86 16 19 C 0.10 1.66 7.28 -83.99 -0.61 1.05 16 20 C -0.14 -2.63 9.71 -39.43 -0.38 -3.01 16 21 C 0.17 3.57 3.41 -66.81 -0.23 3.34 16 22 C -0.13 -2.58 6.43 -25.03 -0.16 -2.74 16 23 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 24 C -0.12 -2.00 6.83 -25.07 -0.17 -2.17 16 25 C -0.13 -2.51 6.14 -25.61 -0.16 -2.67 16 26 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 27 H 0.11 2.73 5.40 -51.93 -0.28 2.45 16 28 H 0.03 0.68 7.90 -51.93 -0.41 0.27 16 29 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 30 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.14 1.69 8.06 -52.48 -0.42 1.26 16 32 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 35 H 0.08 1.97 7.22 -51.93 -0.38 1.60 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.56 6.70 -51.93 -0.35 1.21 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -28.35 338.45 -10.85 -39.20 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.34 Total: 8.17 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -4.75 Total: -22.97 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.18 Total: -45.50 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.35 -10.85 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529529448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.989 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds