Wall clock time and date at job start Tue Mar 31 2020 06:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00406 * 2 1 4 4 H 1.48503 * 109.47115 * 239.99492 * 3 2 1 5 5 H 1.48492 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47258 * 119.99803 * 3 2 1 7 7 C 1.38818 * 119.99415 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99592 * 201.58761 * 7 2 1 9 9 N 1.36934 * 120.00237 * 21.58362 * 7 2 1 10 10 C 1.46495 * 120.00051 * 36.74809 * 9 7 2 11 11 C 1.50701 * 109.47477 * 89.99584 * 10 9 7 12 12 C 1.38826 * 119.67042 * 270.02891 * 11 10 9 13 13 C 1.36628 * 120.53031 * 180.02562 * 12 11 10 14 14 C 1.39626 * 119.76135 * 359.97005 * 13 12 11 15 15 C 1.46483 * 134.03106 * 180.02562 * 14 13 12 16 16 C 1.34252 * 106.99572 * 179.17251 * 15 14 13 17 17 N 1.36830 * 109.92657 * 0.74017 * 16 15 14 18 18 H 0.97002 * 125.06197 * 179.32717 * 17 16 15 19 19 C 1.37691 * 109.87225 * 359.34984 * 17 16 15 20 20 C 1.37745 * 119.66172 * 89.99847 * 11 10 9 21 21 C 1.46493 * 120.00111 * 216.74768 * 9 7 2 22 22 C 1.54268 * 110.03608 * 62.53358 * 21 9 7 23 23 C 1.54962 * 104.16384 * 217.13638 * 22 21 9 24 24 C 1.54894 * 102.77592 * 37.88684 * 23 22 21 25 25 C 1.53880 * 110.03489 * 305.31636 * 21 9 7 26 26 H 0.97002 * 119.99656 * 354.92091 * 1 2 3 27 27 H 1.09007 * 109.46970 * 330.00182 * 10 9 7 28 28 H 1.08996 * 109.47406 * 210.00002 * 10 9 7 29 29 H 1.08000 * 119.73487 * 359.97438 * 12 11 10 30 30 H 1.07995 * 120.12017 * 179.97438 * 13 12 11 31 31 H 1.08003 * 126.50386 * 359.96579 * 15 14 13 32 32 H 1.08003 * 125.03560 * 180.08862 * 16 15 14 33 33 H 1.08002 * 120.11348 * 0.02562 * 20 11 10 34 34 H 1.08998 * 110.02193 * 183.92348 * 21 9 7 35 35 H 1.09004 * 110.48433 * 335.78742 * 22 21 9 36 36 H 1.08998 * 110.48945 * 98.42287 * 22 21 9 37 37 H 1.08994 * 110.72010 * 279.57304 * 23 22 21 38 38 H 1.09004 * 110.92238 * 156.29064 * 23 22 21 39 39 H 1.09000 * 110.48865 * 203.40425 * 24 23 22 40 40 H 1.09003 * 110.59912 * 80.81425 * 24 23 22 41 41 H 1.09003 * 110.03289 * 238.57114 * 25 21 9 42 42 H 1.09004 * 110.02466 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2023 0.0005 8 1 3.0333 -1.2349 0.3447 9 7 1.3974 -2.3467 -0.4352 10 6 0.4620 -2.2936 -1.5614 11 6 1.2142 -2.5063 -2.8498 12 6 1.7363 -1.4139 -3.5291 13 6 2.4208 -1.5865 -4.6989 14 6 2.5975 -2.8716 -5.2154 15 6 3.2584 -3.4077 -6.4077 16 6 3.1174 -4.7422 -6.3680 17 7 2.4061 -5.1030 -5.2562 18 1 2.1694 -6.0129 -5.0172 19 6 2.0759 -3.9823 -4.5276 20 6 1.3774 -3.7827 -3.3411 21 6 1.6773 -3.6243 0.2248 22 6 1.2262 -3.5676 1.6990 23 6 2.3072 -4.3781 2.4578 24 6 3.6110 -3.9850 1.7196 25 6 3.1929 -3.8901 0.2378 26 1 -0.4850 0.8368 0.0744 27 1 -0.0263 -1.3192 -1.5824 28 1 -0.2898 -3.0744 -1.4464 29 1 1.5995 -0.4197 -3.1301 30 1 2.8237 -0.7320 -5.2221 31 1 3.7736 -2.8385 -7.1674 32 1 3.4990 -5.4283 -7.1096 33 1 0.9676 -4.6261 -2.8052 34 1 1.1609 -4.4327 -0.2927 35 1 1.2048 -2.5365 2.0520 36 1 0.2473 -4.0323 1.8166 37 1 2.1204 -5.4482 2.3685 38 1 2.3521 -4.0813 3.5057 39 1 4.3716 -4.7543 1.8528 40 1 3.9775 -3.0219 2.0751 41 1 3.4119 -4.8278 -0.2728 42 1 3.7201 -3.0686 -0.2475 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529529448.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:06 Heat of formation + Delta-G solvation = 55.528429 kcal Electronic energy + Delta-G solvation = -22662.078338 eV Core-core repulsion = 19606.816463 eV Total energy + Delta-G solvation = -3055.261875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93992 -39.47868 -37.96382 -35.75424 -33.31923 -32.43934 -30.50533 -30.04579 -29.34147 -28.17357 -26.90081 -24.23967 -23.43932 -21.60353 -21.35833 -21.28278 -20.75085 -18.72475 -18.07847 -17.15035 -16.82688 -16.37557 -16.05543 -15.75455 -15.35069 -14.97661 -14.96087 -14.59202 -14.51302 -14.06665 -13.86517 -13.62097 -13.08357 -12.86628 -12.66541 -12.63389 -12.42721 -12.13216 -12.02047 -11.90893 -11.78692 -11.73976 -11.71247 -11.46347 -11.32242 -11.13762 -10.48478 -10.43891 -8.93591 -8.47143 -8.40967 -7.78015 -5.31073 0.36773 0.85102 1.43841 1.48052 1.52949 1.95621 2.39295 2.53337 3.07675 3.31819 3.80123 3.93941 4.00251 4.03389 4.13069 4.31809 4.37569 4.43972 4.56171 4.60771 4.70393 4.78118 4.84270 4.92653 4.95896 4.96385 4.99588 5.09426 5.21046 5.23226 5.25789 5.32526 5.33910 5.54152 5.61687 5.66286 5.72817 5.77485 5.87389 5.89544 5.95395 6.10784 6.40503 6.59248 6.86601 7.24978 7.96152 8.48127 9.21503 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.006613 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.201101 B = 4233.054063 C = 5533.870245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.028 4.028 3 Si 0.937 3.063 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.048 0.952 9 N -0.577 5.577 10 C 0.181 3.819 11 C -0.065 4.065 12 C -0.138 4.138 13 C -0.090 4.090 14 C -0.142 4.142 15 C -0.233 4.233 16 C 0.064 3.936 17 N -0.591 5.591 18 H 0.427 0.573 19 C 0.082 3.918 20 C -0.134 4.134 21 C 0.166 3.834 22 C -0.129 4.129 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.125 4.125 26 H 0.250 0.750 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.158 0.842 32 H 0.214 0.786 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -12.539 -8.348 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.225 4.225 3 Si 0.767 3.233 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.066 0.934 9 N -0.296 5.296 10 C 0.055 3.945 11 C -0.069 4.069 12 C -0.158 4.158 13 C -0.109 4.109 14 C -0.147 4.147 15 C -0.258 4.258 16 C -0.063 4.063 17 N -0.195 5.195 18 H 0.266 0.734 19 C -0.025 4.025 20 C -0.155 4.155 21 C 0.059 3.941 22 C -0.168 4.168 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.164 4.164 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.143 0.857 31 H 0.176 0.824 32 H 0.231 0.769 33 H 0.138 0.862 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.247 -12.532 -8.375 15.960 hybrid contribution 0.043 1.243 0.372 1.298 sum 5.290 -11.288 -8.003 14.814 Atomic orbital electron populations 1.69983 1.06418 1.25911 1.53784 1.25578 0.95463 1.00490 1.00978 0.85805 0.78244 0.81105 0.78186 1.20945 1.21947 1.20478 1.18863 0.93878 0.86180 1.37749 0.93391 1.43968 1.51229 1.03309 1.31110 1.19838 0.90236 1.01476 0.82930 1.20651 0.97923 0.92207 0.96105 1.20506 1.01061 0.98274 0.95978 1.20350 0.98857 0.96033 0.95649 1.19524 1.04317 0.92651 0.98224 1.21948 1.09596 0.94527 0.99728 1.22425 0.96813 0.96351 0.90673 1.41804 1.48879 1.07717 1.21116 0.73434 1.18310 1.01459 0.87665 0.95114 1.19863 1.03779 0.96731 0.95172 1.21231 0.93781 0.87228 0.91832 1.22720 0.97636 0.99355 0.97133 1.22391 0.94348 0.99732 0.98410 1.22227 0.97623 1.00442 0.94814 1.22430 0.97365 0.99832 0.96752 0.94022 0.90882 0.94876 0.88935 0.85700 0.82395 0.76912 0.86171 0.92600 0.93847 0.93291 0.90256 0.91755 0.90449 0.93677 0.92032 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.98 11.42 21.65 0.25 -52.74 16 2 C -0.03 -1.55 4.96 84.86 0.42 -1.13 16 3 Si 0.94 45.29 29.61 68.60 2.03 47.32 16 4 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 7 C -0.24 -12.70 7.80 84.04 0.66 -12.04 16 8 H 0.05 2.66 6.93 -2.91 -0.02 2.64 16 9 N -0.58 -28.10 2.37 -678.33 -1.61 -29.71 16 10 C 0.18 8.68 5.36 85.63 0.46 9.14 16 11 C -0.06 -2.80 5.46 -19.84 -0.11 -2.91 16 12 C -0.14 -6.06 9.61 22.03 0.21 -5.85 16 13 C -0.09 -3.43 10.05 22.23 0.22 -3.21 16 14 C -0.14 -4.90 6.37 -20.20 -0.13 -5.03 16 15 C -0.23 -5.98 11.08 23.51 0.26 -5.72 16 16 C 0.06 1.23 11.82 83.00 0.98 2.21 16 17 N -0.59 -13.49 6.07 -187.59 -1.14 -14.63 16 18 H 0.43 6.80 8.96 -92.71 -0.83 5.97 16 19 C 0.08 2.69 7.28 39.03 0.28 2.97 16 20 C -0.13 -4.92 9.71 22.37 0.22 -4.70 16 21 C 0.17 6.82 3.41 45.72 0.16 6.98 16 22 C -0.13 -5.11 6.43 31.69 0.20 -4.91 16 23 C -0.11 -3.42 6.91 31.91 0.22 -3.20 16 24 C -0.11 -3.65 6.83 31.67 0.22 -3.44 16 25 C -0.12 -4.63 6.14 31.32 0.19 -4.44 16 26 H 0.25 14.18 8.32 -92.71 -0.77 13.41 16 27 H 0.07 4.02 5.40 -2.38 -0.01 4.01 16 28 H 0.03 1.51 7.90 -2.39 -0.02 1.49 16 29 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 30 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 32 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.12 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.06 2.15 7.86 -2.39 -0.02 2.14 16 35 H 0.04 2.08 7.22 -2.38 -0.02 2.06 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.80 6.70 -2.38 -0.02 1.78 16 Total: -1.00 -65.59 338.45 4.17 -61.41 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.18 Total: 23.62 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 4.46 Total: -35.28 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -2.50 Total: -97.08 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.59 4.17 -61.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529529448.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.940 kcal (2) G-P(sol) polarization free energy of solvation -65.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds