Wall clock time and date at job start Tue Mar 31 2020 06:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00392 * 2 1 4 4 H 1.48491 * 109.47374 * 240.00372 * 3 2 1 5 5 H 1.48496 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46824 * 120.00150 * 3 2 1 7 7 C 1.37875 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00592 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00076 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47506 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00185 * 189.99780 * 10 9 7 12 12 C 1.50700 * 109.47308 * 75.82741 * 11 10 9 13 13 C 1.38831 * 119.66936 * 264.42272 * 12 11 10 14 14 C 1.36616 * 120.53121 * 180.02562 * 13 12 11 15 15 C 1.39632 * 119.76275 * 359.97072 * 14 13 12 16 16 C 1.46493 * 134.02993 * 179.97438 * 15 14 13 17 17 C 1.34233 * 106.99581 * 180.02562 * 16 15 14 18 18 N 1.36829 * 109.93109 * 0.02562 * 17 16 15 19 19 H 0.97007 * 125.06733 * 179.97438 * 18 17 16 20 20 C 1.37686 * 109.87498 * 359.97438 * 18 17 16 21 21 C 1.37749 * 119.66477 * 84.39246 * 12 11 10 22 22 C 1.46907 * 110.99780 * 66.04711 * 10 9 7 23 23 C 1.53005 * 109.46727 * 199.45783 * 22 10 9 24 24 C 1.53008 * 117.49335 * 243.55059 * 23 22 10 25 25 C 1.53000 * 117.49461 * 174.89856 * 23 22 10 26 26 H 0.97007 * 120.00074 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47316 * 59.99410 * 9 7 2 28 28 H 1.09002 * 109.47049 * 300.00153 * 9 7 2 29 29 H 1.08998 * 109.47160 * 315.82631 * 11 10 9 30 30 H 1.09007 * 109.47163 * 195.82819 * 11 10 9 31 31 H 1.08004 * 119.73394 * 359.97438 * 13 12 11 32 32 H 1.08002 * 120.12180 * 180.24659 * 14 13 12 33 33 H 1.07999 * 126.50022 * 0.04684 * 16 15 14 34 34 H 1.07996 * 125.03697 * 180.02562 * 17 16 15 35 35 H 1.08006 * 120.11276 * 359.97438 * 21 12 11 36 36 H 1.09005 * 109.46720 * 319.44635 * 22 10 9 37 37 H 1.08994 * 109.47032 * 79.45211 * 22 10 9 38 38 H 1.08990 * 115.55473 * 29.21613 * 23 22 10 39 39 H 1.09001 * 117.49709 * 0.02562 * 24 23 22 40 40 H 1.08994 * 117.49809 * 145.01707 * 24 23 22 41 41 H 1.09004 * 117.49224 * 214.97365 * 25 23 22 42 42 H 1.08995 * 117.50069 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0018 11 6 1.5207 -4.8934 -0.2399 12 6 1.1629 -5.0073 -1.6994 13 6 -0.1054 -4.6384 -2.1268 14 6 -0.4487 -4.7349 -3.4456 15 6 0.4833 -5.2077 -4.3717 16 6 0.4558 -5.4347 -5.8186 17 6 1.6632 -5.9083 -6.1645 18 7 2.4615 -6.0038 -5.0573 19 1 3.3783 -6.3209 -5.0568 20 6 1.7697 -5.5826 -3.9438 21 6 2.0979 -5.4757 -2.5960 22 6 2.9717 -3.6547 1.2510 23 6 4.2457 -4.4764 1.0442 24 6 4.3955 -5.7640 1.8570 25 6 5.2429 -4.5371 2.2030 26 1 -0.4850 0.8401 0.0004 27 1 0.6238 -2.5567 -0.8902 28 1 0.6246 -2.5571 0.8897 29 1 0.6125 -4.9365 0.3613 30 1 2.1797 -5.7161 0.0379 31 1 -0.8267 -4.2729 -1.4108 32 1 -1.4360 -4.4424 -3.7715 33 1 -0.3777 -5.2547 -6.4814 34 1 1.9606 -6.1746 -7.1680 35 1 3.0822 -5.7593 -2.2538 36 1 3.2380 -2.6395 1.5456 37 1 2.3664 -4.1131 2.0330 38 1 4.6499 -4.4703 0.0320 39 1 3.5862 -6.0258 2.5387 40 1 4.8985 -6.6048 1.3797 41 1 6.3033 -4.5714 1.9530 42 1 4.9916 -3.9915 3.1124 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529531525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:03 Heat of formation + Delta-G solvation = 84.964475 kcal Electronic energy + Delta-G solvation = -21891.407253 eV Core-core repulsion = 18837.421821 eV Total energy + Delta-G solvation = -3053.985432 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86384 -38.10062 -36.79839 -35.01149 -32.51160 -31.61333 -29.50285 -28.96389 -27.34412 -26.00152 -23.75434 -22.50573 -22.09936 -21.06409 -20.44354 -20.17529 -19.51261 -17.63666 -16.41071 -15.81299 -15.34879 -15.09073 -14.56682 -14.20102 -14.16577 -13.83762 -13.57756 -13.49319 -13.24603 -12.98567 -12.55323 -11.83777 -11.72556 -11.66967 -11.28633 -11.22330 -11.11486 -11.05686 -10.83814 -10.64796 -10.45991 -10.34446 -10.07247 -9.60313 -9.48291 -9.35612 -9.08594 -8.37197 -7.75964 -7.35779 -7.18833 -5.96693 -3.96900 1.53556 2.08139 2.97491 3.36294 3.36837 3.40825 3.44052 4.13421 4.30042 4.49060 4.91521 4.99072 5.12067 5.21432 5.27455 5.38224 5.39405 5.48087 5.64093 5.68771 5.79138 5.83678 5.85012 5.92762 6.03571 6.13290 6.16880 6.21255 6.33393 6.33763 6.35956 6.50037 6.55034 6.83808 6.96209 6.98497 7.08756 7.22820 7.39148 7.40872 7.57543 7.75708 7.86641 8.17707 8.28293 8.61231 9.10139 9.66416 11.14163 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.005781 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.111740 B = 4842.048381 C = 6517.277590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.190 3.810 10 N -0.528 5.528 11 C 0.092 3.908 12 C -0.033 4.033 13 C -0.124 4.124 14 C -0.077 4.077 15 C -0.116 4.116 16 C -0.205 4.205 17 C 0.038 3.962 18 N -0.600 5.600 19 H 0.411 0.589 20 C 0.093 3.907 21 C -0.113 4.113 22 C 0.090 3.910 23 C -0.131 4.131 24 C -0.192 4.192 25 C -0.184 4.184 26 H 0.261 0.739 27 H 0.040 0.960 28 H -0.012 1.012 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.021 0.979 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -13.932 -5.722 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.251 5.251 11 C -0.036 4.036 12 C -0.035 4.035 13 C -0.143 4.143 14 C -0.095 4.095 15 C -0.120 4.120 16 C -0.231 4.231 17 C -0.088 4.088 18 N -0.203 5.203 19 H 0.247 0.753 20 C -0.013 4.013 21 C -0.134 4.134 22 C -0.038 4.038 23 C -0.150 4.150 24 C -0.229 4.229 25 C -0.222 4.222 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.006 0.994 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.039 0.961 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.818 -13.759 -6.124 15.812 hybrid contribution 0.324 0.786 0.524 0.999 sum 5.142 -12.972 -5.600 15.036 Atomic orbital electron populations 1.69942 1.05981 1.26725 1.51090 1.24950 0.94820 0.99112 0.95577 0.86618 0.79494 0.83056 0.78582 1.20265 1.21408 1.20341 1.21126 0.93413 0.90014 1.49866 0.92006 1.19806 0.90176 0.87101 0.96358 1.62064 1.27741 1.02188 1.33154 1.21001 0.97290 0.93986 0.91282 1.19460 0.92704 0.96002 0.95346 1.20627 0.96732 1.01215 0.95728 1.20169 0.98301 0.98890 0.92183 1.19152 0.93931 1.05445 0.93517 1.21648 0.98024 1.09836 0.93591 1.21661 0.91597 1.04355 0.91192 1.41716 1.14282 1.58603 1.05748 0.75315 1.18235 0.92441 1.02025 0.88612 1.19724 0.99503 1.05320 0.88874 1.21599 0.91478 1.00168 0.90538 1.22470 0.98160 0.98088 0.96266 1.23030 1.03165 0.92118 1.04589 1.22901 0.96727 1.02031 1.00515 0.92970 0.94187 0.99402 0.94774 0.91197 0.86105 0.86489 0.84156 0.81902 0.86671 0.89068 0.96073 0.87481 0.89354 0.89616 0.89391 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.24 8.24 -34.44 -0.28 -14.52 16 8 H 0.06 1.73 7.31 -52.49 -0.38 1.35 16 9 C 0.19 4.93 4.54 -4.98 -0.02 4.91 16 10 N -0.53 -11.21 4.35 -237.51 -1.03 -12.24 16 11 C 0.09 1.69 4.93 -4.98 -0.02 1.66 16 12 C -0.03 -0.61 5.04 -104.58 -0.53 -1.13 16 13 C -0.12 -2.28 8.31 -39.95 -0.33 -2.61 16 14 C -0.08 -1.32 10.05 -39.65 -0.40 -1.72 16 15 C -0.12 -1.94 6.37 -105.14 -0.67 -2.61 16 16 C -0.21 -2.80 11.08 -37.67 -0.42 -3.22 16 17 C 0.04 0.43 11.81 -16.73 -0.20 0.24 16 18 N -0.60 -7.47 6.07 -10.65 -0.06 -7.54 16 19 H 0.41 3.79 8.96 -40.82 -0.37 3.43 16 20 C 0.09 1.50 7.28 -83.99 -0.61 0.89 16 21 C -0.11 -1.90 9.73 -39.43 -0.38 -2.28 16 22 C 0.09 1.73 5.07 -3.82 -0.02 1.71 16 23 C -0.13 -2.07 5.15 -90.61 -0.47 -2.53 16 24 C -0.19 -2.51 10.09 -26.69 -0.27 -2.78 16 25 C -0.18 -2.48 10.25 -26.70 -0.27 -2.75 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.04 1.11 6.31 -51.93 -0.33 0.78 16 28 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 29 H 0.03 0.63 7.89 -51.93 -0.41 0.22 16 30 H 0.07 1.13 7.18 -51.93 -0.37 0.76 16 31 H 0.12 2.23 7.98 -52.48 -0.42 1.81 16 32 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.09 1.96 6.58 -51.93 -0.34 1.62 16 37 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 38 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.09 1.13 8.03 -51.93 -0.42 0.72 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -31.68 347.17 -11.52 -43.20 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.38 Total: 5.71 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -4.99 Total: -25.22 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.36 Total: -45.84 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.68 -11.52 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529531525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.162 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds