Wall clock time and date at job start Tue Mar 31 2020 06:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00392 * 2 1 4 4 H 1.48491 * 109.47374 * 240.00372 * 3 2 1 5 5 H 1.48496 * 109.46960 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46824 * 120.00150 * 3 2 1 7 7 C 1.37875 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00592 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00076 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47506 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00185 * 189.99780 * 10 9 7 12 12 C 1.50700 * 109.47308 * 75.82741 * 11 10 9 13 13 C 1.38831 * 119.66936 * 264.42272 * 12 11 10 14 14 C 1.36616 * 120.53121 * 180.02562 * 13 12 11 15 15 C 1.39632 * 119.76275 * 359.97072 * 14 13 12 16 16 C 1.46493 * 134.02993 * 179.97438 * 15 14 13 17 17 C 1.34233 * 106.99581 * 180.02562 * 16 15 14 18 18 N 1.36829 * 109.93109 * 0.02562 * 17 16 15 19 19 H 0.97007 * 125.06733 * 179.97438 * 18 17 16 20 20 C 1.37686 * 109.87498 * 359.97438 * 18 17 16 21 21 C 1.37749 * 119.66477 * 84.39246 * 12 11 10 22 22 C 1.46907 * 110.99780 * 66.04711 * 10 9 7 23 23 C 1.53005 * 109.46727 * 199.45783 * 22 10 9 24 24 C 1.53008 * 117.49335 * 243.55059 * 23 22 10 25 25 C 1.53000 * 117.49461 * 174.89856 * 23 22 10 26 26 H 0.97007 * 120.00074 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47316 * 59.99410 * 9 7 2 28 28 H 1.09002 * 109.47049 * 300.00153 * 9 7 2 29 29 H 1.08998 * 109.47160 * 315.82631 * 11 10 9 30 30 H 1.09007 * 109.47163 * 195.82819 * 11 10 9 31 31 H 1.08004 * 119.73394 * 359.97438 * 13 12 11 32 32 H 1.08002 * 120.12180 * 180.24659 * 14 13 12 33 33 H 1.07999 * 126.50022 * 0.04684 * 16 15 14 34 34 H 1.07996 * 125.03697 * 180.02562 * 17 16 15 35 35 H 1.08006 * 120.11276 * 359.97438 * 21 12 11 36 36 H 1.09005 * 109.46720 * 319.44635 * 22 10 9 37 37 H 1.08994 * 109.47032 * 79.45211 * 22 10 9 38 38 H 1.08990 * 115.55473 * 29.21613 * 23 22 10 39 39 H 1.09001 * 117.49709 * 0.02562 * 24 23 22 40 40 H 1.08994 * 117.49809 * 145.01707 * 24 23 22 41 41 H 1.09004 * 117.49224 * 214.97365 * 25 23 22 42 42 H 1.08995 * 117.50069 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0018 11 6 1.5207 -4.8934 -0.2399 12 6 1.1629 -5.0073 -1.6994 13 6 -0.1054 -4.6384 -2.1268 14 6 -0.4487 -4.7349 -3.4456 15 6 0.4833 -5.2077 -4.3717 16 6 0.4558 -5.4347 -5.8186 17 6 1.6632 -5.9083 -6.1645 18 7 2.4615 -6.0038 -5.0573 19 1 3.3783 -6.3209 -5.0568 20 6 1.7697 -5.5826 -3.9438 21 6 2.0979 -5.4757 -2.5960 22 6 2.9717 -3.6547 1.2510 23 6 4.2457 -4.4764 1.0442 24 6 4.3955 -5.7640 1.8570 25 6 5.2429 -4.5371 2.2030 26 1 -0.4850 0.8401 0.0004 27 1 0.6238 -2.5567 -0.8902 28 1 0.6246 -2.5571 0.8897 29 1 0.6125 -4.9365 0.3613 30 1 2.1797 -5.7161 0.0379 31 1 -0.8267 -4.2729 -1.4108 32 1 -1.4360 -4.4424 -3.7715 33 1 -0.3777 -5.2547 -6.4814 34 1 1.9606 -6.1746 -7.1680 35 1 3.0822 -5.7593 -2.2538 36 1 3.2380 -2.6395 1.5456 37 1 2.3664 -4.1131 2.0330 38 1 4.6499 -4.4703 0.0320 39 1 3.5862 -6.0258 2.5387 40 1 4.8985 -6.6048 1.3797 41 1 6.3033 -4.5714 1.9530 42 1 4.9916 -3.9915 3.1124 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529531525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:02 Heat of formation + Delta-G solvation = 66.931886 kcal Electronic energy + Delta-G solvation = -21892.189205 eV Core-core repulsion = 18837.421821 eV Total energy + Delta-G solvation = -3054.767384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00406 -39.54520 -38.01217 -36.52958 -34.58489 -32.90189 -30.82799 -30.20392 -29.26262 -27.42585 -25.55727 -23.81764 -23.15834 -22.70047 -21.61727 -21.36767 -20.96311 -18.83840 -18.43033 -17.07776 -16.84793 -16.72159 -16.15240 -15.67814 -15.40289 -15.16326 -14.98476 -14.85749 -14.58474 -14.33268 -13.94457 -13.58146 -13.45104 -13.01758 -12.94937 -12.63629 -12.54966 -12.49347 -12.35016 -12.27393 -12.11812 -11.84641 -11.60895 -11.28671 -11.02096 -10.71444 -10.57228 -10.48915 -9.07545 -8.91895 -8.51236 -8.17098 -6.26050 0.29860 0.74756 1.39170 1.42646 1.50239 1.91839 2.35938 2.41015 2.91905 3.02083 3.15388 3.46743 3.86297 3.99740 4.09622 4.11759 4.15281 4.19928 4.30678 4.43300 4.53960 4.58247 4.62596 4.69691 4.82853 4.88940 4.89892 4.94223 4.99142 5.08796 5.15823 5.24561 5.25290 5.32851 5.38654 5.46667 5.64528 5.68568 5.77996 5.89967 5.91487 6.11186 6.32436 6.43326 6.68048 6.83708 6.90049 7.42410 8.93585 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.005781 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.111740 B = 4842.048381 C = 6517.277590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.209 3.791 10 N -0.530 5.530 11 C 0.100 3.900 12 C -0.060 4.060 13 C -0.146 4.146 14 C -0.090 4.090 15 C -0.136 4.136 16 C -0.236 4.236 17 C 0.068 3.932 18 N -0.588 5.588 19 H 0.428 0.572 20 C 0.076 3.924 21 C -0.109 4.109 22 C 0.094 3.906 23 C -0.152 4.152 24 C -0.170 4.170 25 C -0.174 4.174 26 H 0.263 0.737 27 H 0.014 0.986 28 H -0.045 1.045 29 H 0.022 0.978 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.215 0.785 35 H 0.132 0.868 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 -15.167 -7.346 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.082 3.918 10 N -0.253 5.253 11 C -0.028 4.028 12 C -0.062 4.062 13 C -0.166 4.166 14 C -0.109 4.109 15 C -0.141 4.141 16 C -0.260 4.260 17 C -0.059 4.059 18 N -0.193 5.193 19 H 0.268 0.732 20 C -0.031 4.031 21 C -0.131 4.131 22 C -0.034 4.034 23 C -0.171 4.171 24 C -0.207 4.207 25 C -0.211 4.211 26 H 0.072 0.928 27 H 0.032 0.968 28 H -0.027 1.027 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.145 0.855 33 H 0.176 0.824 34 H 0.232 0.768 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.524 -15.024 -7.744 18.501 hybrid contribution -0.507 1.083 0.937 1.519 sum 7.017 -13.941 -6.807 17.027 Atomic orbital electron populations 1.70083 1.07625 1.27725 1.51925 1.25856 0.95695 1.02942 0.95028 0.85524 0.78257 0.78355 0.79023 1.19677 1.20800 1.19087 1.21427 0.93440 0.91235 1.49726 0.92199 1.19397 0.90185 0.88649 0.93528 1.62009 1.26704 1.02257 1.34363 1.20984 0.97016 0.93055 0.91696 1.19469 0.93184 0.98001 0.95504 1.20615 0.97058 1.02664 0.96254 1.20342 0.99289 0.99259 0.91996 1.19599 0.94095 1.05102 0.95332 1.21980 1.00109 1.11774 0.92171 1.22455 0.90181 1.00732 0.92524 1.41808 1.15131 1.57462 1.04882 0.73228 1.18326 0.92954 1.02540 0.89286 1.19854 0.99628 1.04351 0.89231 1.21533 0.92944 0.99317 0.89588 1.22189 0.97339 1.00439 0.97092 1.23107 1.02832 0.91776 1.03016 1.23006 0.97342 1.01819 0.98973 0.92836 0.96764 1.02698 0.95972 0.88652 0.87968 0.85521 0.82367 0.76812 0.84996 0.92147 0.96058 0.87982 0.89129 0.87298 0.87419 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.52 -30.44 8.24 25.60 0.21 -30.23 16 8 H 0.06 3.45 7.31 -2.91 -0.02 3.43 16 9 C 0.21 11.52 4.54 85.56 0.39 11.91 16 10 N -0.53 -23.52 4.35 -905.35 -3.94 -27.45 16 11 C 0.10 3.81 4.93 85.56 0.42 4.23 16 12 C -0.06 -2.27 5.04 -19.84 -0.10 -2.37 16 13 C -0.15 -5.81 8.31 22.03 0.18 -5.63 16 14 C -0.09 -3.27 10.05 22.23 0.22 -3.05 16 15 C -0.14 -4.53 6.37 -20.20 -0.13 -4.66 16 16 C -0.24 -5.91 11.08 23.51 0.26 -5.65 16 17 C 0.07 1.27 11.81 83.00 0.98 2.25 16 18 N -0.59 -12.74 6.07 -187.62 -1.14 -13.88 16 19 H 0.43 6.26 8.96 -92.70 -0.83 5.43 16 20 C 0.08 2.37 7.28 39.03 0.28 2.65 16 21 C -0.11 -3.65 9.73 22.37 0.22 -3.44 16 22 C 0.09 3.71 5.07 86.30 0.44 4.15 16 23 C -0.15 -4.63 5.15 -10.79 -0.06 -4.69 16 24 C -0.17 -4.00 10.09 30.62 0.31 -3.69 16 25 C -0.17 -4.29 10.25 30.62 0.31 -3.98 16 26 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 27 H 0.01 0.86 6.31 -2.39 -0.02 0.84 16 28 H -0.04 -2.69 8.12 -2.39 -0.02 -2.70 16 29 H 0.02 0.88 7.89 -2.39 -0.02 0.86 16 30 H 0.10 3.07 7.18 -2.38 -0.02 3.06 16 31 H 0.10 4.26 7.98 -2.91 -0.02 4.23 16 32 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 34 H 0.22 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 36 H 0.06 2.71 6.58 -2.38 -0.02 2.70 16 37 H 0.02 0.82 7.74 -2.39 -0.02 0.80 16 38 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 2.11 8.03 -2.39 -0.02 2.09 16 40 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -72.12 347.17 1.83 -70.29 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.18 Total: 22.42 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 4.41 Total: -41.57 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -4.79 Total: -98.85 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.12 1.83 -70.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529531525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.226 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds