Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48502 * 109.47125 * 270.00369 * 3 2 1 5 5 H 1.48495 * 109.46723 * 30.00326 * 3 2 1 6 6 H 1.48495 * 109.46673 * 150.00106 * 3 2 1 7 7 C 1.37877 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00139 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99939 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.50352 * 60.08189 * 9 7 2 11 11 C 1.53121 * 109.50557 * 300.00167 * 9 7 2 12 12 C 1.53121 * 109.15938 * 182.36527 * 11 9 7 13 13 C 1.53035 * 109.27843 * 57.65680 * 12 11 9 14 14 N 1.46845 * 109.52148 * 300.82021 * 13 12 11 15 15 C 1.46910 * 110.99741 * 185.84381 * 14 13 12 16 16 C 1.50690 * 109.47417 * 66.04490 * 15 14 13 17 17 C 1.38834 * 119.66701 * 269.97862 * 16 15 14 18 18 C 1.36628 * 120.53246 * 180.02562 * 17 16 15 19 19 C 1.39627 * 119.76116 * 0.02562 * 18 17 16 20 20 C 1.46491 * 134.03245 * 179.97438 * 19 18 17 21 21 C 1.34242 * 106.99657 * 180.02562 * 20 19 18 22 22 N 1.36829 * 109.93129 * 0.26676 * 21 20 19 23 23 H 0.96998 * 125.06612 * 179.73497 * 22 21 20 24 24 C 1.37691 * 109.87226 * 359.55776 * 22 21 20 25 25 C 1.37747 * 119.66961 * 90.00080 * 16 15 14 26 26 C 1.46839 * 111.20254 * 61.74370 * 14 13 12 27 27 H 0.97003 * 120.00629 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.52154 * 62.46259 * 11 9 7 29 29 H 1.08999 * 109.52074 * 302.26869 * 11 9 7 30 30 H 1.08999 * 109.50250 * 297.71442 * 12 11 9 31 31 H 1.09002 * 109.49983 * 177.59778 * 12 11 9 32 32 H 1.09001 * 109.46193 * 180.80478 * 13 12 11 33 33 H 1.08996 * 109.46245 * 60.83337 * 13 12 11 34 34 H 1.09004 * 109.46644 * 306.03830 * 15 14 13 35 35 H 1.09007 * 109.46875 * 186.04506 * 15 14 13 36 36 H 1.08004 * 119.73132 * 0.02562 * 17 16 15 37 37 H 1.08000 * 120.12102 * 179.97438 * 18 17 16 38 38 H 1.07998 * 126.49748 * 0.02562 * 20 19 18 39 39 H 1.08002 * 125.03032 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.10848 * 359.97438 * 25 16 15 41 41 H 1.09008 * 109.46329 * 58.27228 * 26 14 13 42 42 H 1.09006 * 109.46883 * 178.23887 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 1 3.8758 -0.6817 0.8894 11 6 4.0223 -0.4720 -1.2511 12 6 5.5523 -0.5280 -1.2739 13 6 6.0049 -1.9895 -1.2421 14 7 5.4916 -2.6358 -0.0275 15 6 6.0205 -3.9998 0.1067 16 6 7.5091 -3.9414 0.3334 17 6 8.3712 -3.9613 -0.7546 18 6 9.7239 -3.9097 -0.5694 19 6 10.2440 -3.8368 0.7243 20 6 11.6001 -3.7697 1.2743 21 6 11.4796 -3.7160 2.6102 22 7 10.1575 -3.7491 2.9610 23 1 9.8215 -3.7255 3.8706 24 6 9.3748 -3.8170 1.8302 25 6 8.0008 -3.8692 1.6181 26 6 4.0233 -2.6362 -0.0061 27 1 -0.4851 0.8400 0.0004 28 1 3.6961 0.5679 -1.2299 29 1 3.6266 -0.9608 -2.1413 30 1 5.9486 -0.0052 -0.4034 31 1 5.9203 -0.0528 -2.1832 32 1 7.0940 -2.0326 -1.2438 33 1 5.6197 -2.5082 -2.1199 34 1 5.8134 -4.5610 -0.8046 35 1 5.5430 -4.4930 0.9535 36 1 7.9693 -4.0181 -1.7555 37 1 10.3885 -3.9260 -1.4205 38 1 12.5219 -3.7645 0.7116 39 1 12.3043 -3.6600 3.3053 40 1 7.3219 -3.8542 2.4580 41 1 3.6474 -3.1520 -0.8899 42 1 3.6732 -3.1490 0.8898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529623875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = 59.298620 kcal Electronic energy + Delta-G solvation = -21960.446455 eV Core-core repulsion = 18905.348067 eV Total energy + Delta-G solvation = -3055.098387 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23282 -38.74821 -36.93730 -33.84572 -32.32871 -31.62515 -30.30030 -29.42947 -29.19435 -25.59595 -24.89620 -22.94046 -22.35713 -21.28113 -20.77442 -20.27485 -18.81767 -17.94273 -16.68780 -16.21851 -15.56988 -15.24347 -14.60153 -14.46858 -14.10007 -14.05247 -13.71428 -13.59680 -13.41276 -13.11297 -12.89681 -12.42098 -12.18770 -12.08544 -11.58871 -11.55558 -11.33096 -11.01060 -10.96569 -10.77203 -10.41070 -10.02771 -9.93024 -9.72675 -9.63767 -9.05850 -8.88714 -8.48260 -8.18030 -7.78089 -7.68838 -6.04103 -4.02945 1.14357 1.64545 2.64447 3.05352 3.31532 3.42458 3.46583 3.87343 4.45707 4.58595 4.66252 4.77653 4.96808 5.13636 5.28068 5.30648 5.41645 5.45621 5.54922 5.60204 5.67152 5.79405 5.84782 5.91192 5.97155 6.07072 6.09843 6.21571 6.33652 6.38930 6.51315 6.56575 6.60652 6.66452 6.72107 6.78852 6.86673 6.90318 7.16515 7.24605 7.43002 7.47131 7.65180 7.69714 7.91191 8.55382 8.99163 9.59100 11.09166 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.003667 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.639880 B = 7634.666679 C = 7713.562036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.021 3.979 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.119 4.119 13 C 0.060 3.940 14 N -0.536 5.536 15 C 0.093 3.907 16 C -0.046 4.046 17 C -0.136 4.136 18 C -0.076 4.076 19 C -0.115 4.115 20 C -0.207 4.207 21 C 0.045 3.955 22 N -0.598 5.598 23 H 0.414 0.586 24 C 0.095 3.905 25 C -0.109 4.109 26 C 0.077 3.923 27 H 0.263 0.737 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.121 0.879 41 H 0.027 0.973 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.399 -8.352 2.376 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.035 4.035 16 C -0.048 4.048 17 C -0.155 4.155 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.233 4.233 21 C -0.082 4.082 22 N -0.201 5.201 23 H 0.251 0.749 24 C -0.012 4.012 25 C -0.130 4.130 26 C -0.050 4.050 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.161 0.839 39 H 0.184 0.816 40 H 0.139 0.861 41 H 0.045 0.955 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.363 -7.976 2.905 23.920 hybrid contribution -0.033 0.591 -0.311 0.668 sum 22.330 -7.386 2.594 23.662 Atomic orbital electron populations 1.69899 1.06307 1.26904 1.51069 1.24979 0.94652 0.99041 0.94435 0.86826 0.80003 0.83461 0.77868 1.20718 1.22688 1.18828 1.21013 0.88830 0.94458 1.50855 0.90967 1.19155 0.95840 0.91150 0.93721 0.94721 1.22023 0.92733 1.00124 1.01077 1.21647 0.97936 0.95403 1.00714 1.22081 0.99240 0.95223 0.90286 1.62022 1.10036 1.15765 1.38185 1.21010 0.90448 0.91025 1.00982 1.19462 0.95190 0.98165 0.91999 1.20571 0.92894 1.03621 0.98419 1.20177 0.94838 0.99649 0.94827 1.19187 0.92919 1.06992 0.92830 1.21671 0.95870 1.12559 0.93190 1.21760 0.85443 1.04414 0.96544 1.41793 1.05323 1.65348 1.07622 0.74938 1.18262 0.92555 1.04109 0.86246 1.19868 0.90717 1.05044 0.97405 1.22103 0.83466 0.99670 0.99733 0.92725 0.93655 0.92587 0.91960 0.92899 0.91195 0.95538 0.94239 0.90176 0.86292 0.86335 0.83947 0.81594 0.86095 0.95517 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 22.43 24.35 -169.99 -4.14 18.29 16 4 H -0.28 -6.90 6.89 56.52 0.39 -6.51 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 7 C -0.51 -14.46 9.15 -34.44 -0.32 -14.77 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.03 0.87 7.21 -51.93 -0.37 0.50 16 11 C -0.12 -2.69 4.73 -26.61 -0.13 -2.82 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.06 1.00 5.15 -3.84 -0.02 0.98 16 14 N -0.54 -9.40 4.65 -236.11 -1.10 -10.50 16 15 C 0.09 1.35 5.10 -4.98 -0.03 1.32 16 16 C -0.05 -0.63 4.90 -104.59 -0.51 -1.14 16 17 C -0.14 -1.72 7.79 -39.94 -0.31 -2.03 16 18 C -0.08 -0.93 10.05 -39.65 -0.40 -1.32 16 19 C -0.11 -1.45 6.37 -105.14 -0.67 -2.12 16 20 C -0.21 -2.13 11.08 -37.67 -0.42 -2.54 16 21 C 0.04 0.38 11.82 -16.73 -0.20 0.18 16 22 N -0.60 -5.73 6.07 -10.65 -0.06 -5.80 16 23 H 0.41 2.82 8.96 -40.82 -0.37 2.45 16 24 C 0.09 1.20 7.28 -83.98 -0.61 0.59 16 25 C -0.11 -1.45 9.71 -39.43 -0.38 -1.83 16 26 C 0.08 1.56 4.68 -3.84 -0.02 1.55 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.05 1.06 3.34 -51.93 -0.17 0.89 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.08 5.74 -51.93 -0.30 0.78 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.55 8.06 -51.93 -0.42 0.13 16 35 H 0.08 1.11 7.92 -51.92 -0.41 0.69 16 36 H 0.12 1.37 7.94 -52.48 -0.42 0.95 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.07 1.34 8.01 -51.93 -0.42 0.92 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -32.27 327.17 -10.31 -42.58 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.28 Total: 1.65 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -4.43 Total: -24.05 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.39 Total: -43.40 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.14 Total: 18.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.27 -10.31 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529623875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.874 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds