Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48502 * 109.47125 * 270.00369 * 3 2 1 5 5 H 1.48495 * 109.46723 * 30.00326 * 3 2 1 6 6 H 1.48495 * 109.46673 * 150.00106 * 3 2 1 7 7 C 1.37877 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00139 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99939 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.50352 * 60.08189 * 9 7 2 11 11 C 1.53121 * 109.50557 * 300.00167 * 9 7 2 12 12 C 1.53121 * 109.15938 * 182.36527 * 11 9 7 13 13 C 1.53035 * 109.27843 * 57.65680 * 12 11 9 14 14 N 1.46845 * 109.52148 * 300.82021 * 13 12 11 15 15 C 1.46910 * 110.99741 * 185.84381 * 14 13 12 16 16 C 1.50690 * 109.47417 * 66.04490 * 15 14 13 17 17 C 1.38834 * 119.66701 * 269.97862 * 16 15 14 18 18 C 1.36628 * 120.53246 * 180.02562 * 17 16 15 19 19 C 1.39627 * 119.76116 * 0.02562 * 18 17 16 20 20 C 1.46491 * 134.03245 * 179.97438 * 19 18 17 21 21 C 1.34242 * 106.99657 * 180.02562 * 20 19 18 22 22 N 1.36829 * 109.93129 * 0.26676 * 21 20 19 23 23 H 0.96998 * 125.06612 * 179.73497 * 22 21 20 24 24 C 1.37691 * 109.87226 * 359.55776 * 22 21 20 25 25 C 1.37747 * 119.66961 * 90.00080 * 16 15 14 26 26 C 1.46839 * 111.20254 * 61.74370 * 14 13 12 27 27 H 0.97003 * 120.00629 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.52154 * 62.46259 * 11 9 7 29 29 H 1.08999 * 109.52074 * 302.26869 * 11 9 7 30 30 H 1.08999 * 109.50250 * 297.71442 * 12 11 9 31 31 H 1.09002 * 109.49983 * 177.59778 * 12 11 9 32 32 H 1.09001 * 109.46193 * 180.80478 * 13 12 11 33 33 H 1.08996 * 109.46245 * 60.83337 * 13 12 11 34 34 H 1.09004 * 109.46644 * 306.03830 * 15 14 13 35 35 H 1.09007 * 109.46875 * 186.04506 * 15 14 13 36 36 H 1.08004 * 119.73132 * 0.02562 * 17 16 15 37 37 H 1.08000 * 120.12102 * 179.97438 * 18 17 16 38 38 H 1.07998 * 126.49748 * 0.02562 * 20 19 18 39 39 H 1.08002 * 125.03032 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.10848 * 359.97438 * 25 16 15 41 41 H 1.09008 * 109.46329 * 58.27228 * 26 14 13 42 42 H 1.09006 * 109.46883 * 178.23887 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 1 3.8758 -0.6817 0.8894 11 6 4.0223 -0.4720 -1.2511 12 6 5.5523 -0.5280 -1.2739 13 6 6.0049 -1.9895 -1.2421 14 7 5.4916 -2.6358 -0.0275 15 6 6.0205 -3.9998 0.1067 16 6 7.5091 -3.9414 0.3334 17 6 8.3712 -3.9613 -0.7546 18 6 9.7239 -3.9097 -0.5694 19 6 10.2440 -3.8368 0.7243 20 6 11.6001 -3.7697 1.2743 21 6 11.4796 -3.7160 2.6102 22 7 10.1575 -3.7491 2.9610 23 1 9.8215 -3.7255 3.8706 24 6 9.3748 -3.8170 1.8302 25 6 8.0008 -3.8692 1.6181 26 6 4.0233 -2.6362 -0.0061 27 1 -0.4851 0.8400 0.0004 28 1 3.6961 0.5679 -1.2299 29 1 3.6266 -0.9608 -2.1413 30 1 5.9486 -0.0052 -0.4034 31 1 5.9203 -0.0528 -2.1832 32 1 7.0940 -2.0326 -1.2438 33 1 5.6197 -2.5082 -2.1199 34 1 5.8134 -4.5610 -0.8046 35 1 5.5430 -4.4930 0.9535 36 1 7.9693 -4.0181 -1.7555 37 1 10.3885 -3.9260 -1.4205 38 1 12.5219 -3.7645 0.7116 39 1 12.3043 -3.6600 3.3053 40 1 7.3219 -3.8542 2.4580 41 1 3.6474 -3.1520 -0.8899 42 1 3.6732 -3.1490 0.8898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529623875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = 38.982285 kcal Electronic energy + Delta-G solvation = -21961.327437 eV Core-core repulsion = 18905.348067 eV Total energy + Delta-G solvation = -3055.979370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.04279 -40.13230 -38.03324 -35.49625 -34.02363 -32.69096 -32.01480 -30.44531 -30.09932 -26.87077 -26.74664 -24.04946 -23.66196 -22.78537 -21.59532 -21.29773 -20.47357 -18.86732 -18.70682 -17.31340 -16.95541 -16.33023 -16.14109 -15.48265 -15.37975 -15.30630 -15.16338 -14.81698 -14.63359 -14.60520 -14.06612 -13.91394 -13.74320 -13.19042 -12.94292 -12.79692 -12.70360 -12.48203 -12.32605 -12.18185 -11.85460 -11.77079 -11.63370 -11.43035 -11.00771 -10.80005 -10.63140 -10.53245 -9.22728 -8.98033 -8.54392 -8.30356 -6.33423 0.26321 0.72020 1.29703 1.35917 1.47243 1.89477 2.32772 2.34515 2.86234 3.05589 3.31931 3.80917 3.97353 4.04694 4.08254 4.13872 4.26833 4.29514 4.42289 4.47851 4.55992 4.58773 4.65561 4.69893 4.81948 4.82643 4.87468 4.95365 5.00011 5.07798 5.13709 5.16658 5.21515 5.25270 5.45135 5.63239 5.63986 5.73323 5.75770 5.88179 5.91250 6.18206 6.26748 6.32136 6.36934 6.73996 6.77673 7.32324 8.86482 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.003667 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.639880 B = 7634.666679 C = 7713.562036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.518 4.518 8 H 0.035 0.965 9 C 0.021 3.979 10 H 0.022 0.978 11 C -0.121 4.121 12 C -0.114 4.114 13 C 0.062 3.938 14 N -0.541 5.541 15 C 0.097 3.903 16 C -0.062 4.062 17 C -0.143 4.143 18 C -0.082 4.082 19 C -0.133 4.133 20 C -0.231 4.231 21 C 0.061 3.939 22 N -0.594 5.594 23 H 0.426 0.574 24 C 0.074 3.926 25 C -0.119 4.119 26 C 0.088 3.912 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.209 0.791 40 H 0.121 0.879 41 H 0.020 0.980 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.065 -7.963 2.392 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.227 1.227 6 H -0.175 1.175 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.002 3.998 10 H 0.040 0.960 11 C -0.159 4.159 12 C -0.152 4.152 13 C -0.066 4.066 14 N -0.266 5.266 15 C -0.030 4.030 16 C -0.064 4.064 17 C -0.162 4.162 18 C -0.100 4.100 19 C -0.138 4.138 20 C -0.256 4.256 21 C -0.066 4.066 22 N -0.198 5.198 23 H 0.265 0.735 24 C -0.034 4.034 25 C -0.140 4.140 26 C -0.039 4.039 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.179 0.821 39 H 0.225 0.775 40 H 0.139 0.861 41 H 0.038 0.962 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.053 -7.606 2.932 27.299 hybrid contribution -1.130 0.355 -0.239 1.208 sum 24.923 -7.251 2.693 26.096 Atomic orbital electron populations 1.70041 1.08119 1.27976 1.52944 1.25814 0.95371 1.02860 0.94251 0.85810 0.78968 0.78816 0.78626 1.19265 1.22699 1.17527 1.21337 0.91418 0.93026 1.49833 0.94699 1.19062 0.92879 0.93654 0.94249 0.95961 1.21918 0.95698 0.98780 0.99470 1.21622 0.94752 0.96821 1.01977 1.22107 1.00306 0.94104 0.90047 1.61958 1.07765 1.17945 1.38926 1.21000 0.91297 0.89298 1.01410 1.19375 0.94412 0.99919 0.92651 1.20687 0.93161 1.03832 0.98534 1.20443 0.94959 0.99082 0.95550 1.19647 0.94324 1.06754 0.93124 1.22011 0.95607 1.13869 0.94121 1.22462 0.85718 1.01494 0.96908 1.41925 1.05603 1.64546 1.07690 0.73526 1.18391 0.92530 1.04883 0.87573 1.19960 0.91401 1.05222 0.97407 1.21800 0.85732 0.97166 0.99210 0.92565 0.94816 0.93105 0.92397 0.90052 0.89213 0.94967 0.93486 0.90067 0.85314 0.84414 0.82118 0.77475 0.86105 0.96224 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.01 0.83 5.45 84.66 0.46 1.29 16 3 Si 0.95 46.55 24.35 68.60 1.67 48.22 16 4 H -0.27 -12.40 6.89 99.48 0.69 -11.71 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.25 -11.69 6.53 99.48 0.65 -11.04 16 7 C -0.52 -30.10 9.15 25.60 0.23 -29.87 16 8 H 0.03 2.22 7.99 -2.91 -0.02 2.20 16 9 C 0.02 0.99 1.85 -11.49 -0.02 0.97 16 10 H 0.02 1.12 7.21 -2.39 -0.02 1.10 16 11 C -0.12 -5.20 4.73 30.68 0.15 -5.05 16 12 C -0.11 -3.90 6.09 30.65 0.19 -3.71 16 13 C 0.06 1.93 5.15 86.33 0.44 2.37 16 14 N -0.54 -18.42 4.65 -900.91 -4.19 -22.60 16 15 C 0.10 2.73 5.10 85.55 0.44 3.16 16 16 C -0.06 -1.61 4.90 -19.84 -0.10 -1.71 16 17 C -0.14 -3.36 7.79 22.04 0.17 -3.19 16 18 C -0.08 -1.82 10.05 22.23 0.22 -1.60 16 19 C -0.13 -3.11 6.37 -20.20 -0.13 -3.24 16 20 C -0.23 -4.07 11.08 23.51 0.26 -3.81 16 21 C 0.06 0.82 11.82 83.00 0.98 1.80 16 22 N -0.59 -9.91 6.07 -187.60 -1.14 -11.05 16 23 H 0.43 4.78 8.96 -92.71 -0.83 3.95 16 24 C 0.07 1.74 7.28 39.03 0.28 2.02 16 25 C -0.12 -3.04 9.71 22.37 0.22 -2.82 16 26 C 0.09 3.61 4.68 86.33 0.40 4.02 16 27 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.03 1.52 3.34 -2.39 -0.01 1.51 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.09 2.50 5.74 -2.39 -0.01 2.49 16 33 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.25 8.06 -2.39 -0.02 1.23 16 35 H 0.08 2.22 7.92 -2.38 -0.02 2.20 16 36 H 0.13 2.68 7.94 -2.91 -0.02 2.65 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.21 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.06 2.52 8.01 -2.38 -0.02 2.50 16 Total: -1.00 -71.04 327.17 0.96 -70.09 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.11 Total: 14.84 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 4.20 Total: -39.37 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -5.02 Total: -93.78 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.67 Total: 48.22 kcal Total: -71.04 0.96 -70.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529623875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.071 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds