Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 N 1.29014 * 126.43954 * 269.68745 * 5 4 3 7 7 N 1.28737 * 108.81027 * 179.83675 * 6 5 4 8 8 N 1.28841 * 109.39593 * 0.44217 * 7 6 5 9 9 C 1.31070 * 107.99132 * 359.73295 * 8 7 6 10 10 C 1.50696 * 126.66193 * 179.97438 * 9 8 7 11 11 S 1.81404 * 109.47200 * 270.03965 * 10 9 8 12 12 C 1.81397 * 103.00097 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47104 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47342 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47539 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99855 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00312 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99832 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00016 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47015 * 89.99945 * 19 17 15 21 21 H 1.48498 * 109.47101 * 209.99780 * 19 17 15 22 22 H 1.48494 * 109.46994 * 329.99769 * 19 17 15 23 23 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 24 24 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 29 29 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 31 31 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 32 32 H 1.08999 * 109.47475 * 30.04141 * 10 9 8 33 33 H 1.09005 * 109.47216 * 150.04438 * 10 9 8 34 34 H 1.09000 * 109.47323 * 300.00237 * 12 11 10 35 35 H 1.09003 * 109.46853 * 60.00392 * 12 11 10 36 36 H 1.09000 * 109.47040 * 300.00186 * 13 12 11 37 37 H 1.08994 * 109.47110 * 59.99702 * 13 12 11 38 38 H 1.09000 * 109.46777 * 299.99823 * 14 13 12 39 39 H 1.08994 * 109.47689 * 59.99533 * 14 13 12 40 40 H 0.97000 * 119.99875 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8239 0.0000 6 7 4.3193 3.5439 -1.0382 7 7 4.7227 4.7028 -0.6488 8 7 4.7355 4.7410 0.6389 9 6 4.3242 3.5782 1.0826 10 6 4.1782 3.1658 2.5246 11 16 5.7324 2.4311 3.1038 12 6 5.3652 2.0065 4.8287 13 6 6.5979 1.3661 5.4699 14 6 6.2881 1.0074 6.9245 15 6 7.5025 0.3772 7.5562 16 1 8.4050 0.2453 6.9778 17 6 7.4615 -0.0309 8.8725 18 7 8.5212 -0.5814 9.4236 19 14 5.9003 0.1966 9.8728 20 1 5.0424 -1.0073 9.7320 21 1 6.2522 0.3891 11.3026 22 1 5.1654 1.3887 9.3790 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 1.6764 1.9564 0.8900 30 1 3.9329 0.9289 0.8909 31 1 3.9336 0.9287 -0.8892 32 1 3.9418 4.0404 3.1306 33 1 3.3751 2.4341 2.6137 34 1 5.0993 2.9105 5.3767 35 1 4.5323 1.3041 4.8606 36 1 6.8643 0.4622 4.9220 37 1 7.4305 2.0688 5.4379 38 1 6.0216 1.9111 7.4727 39 1 5.4556 0.3046 6.9561 40 1 8.4922 -0.8689 10.3496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532457447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = 84.885142 kcal Electronic energy + Delta-G solvation = -19279.372564 eV Core-core repulsion = 16257.287299 eV Total energy + Delta-G solvation = -3022.085265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.43316 -37.34272 -34.72573 -34.69054 -33.92280 -32.17222 -30.34486 -28.98646 -28.09791 -25.44422 -23.69971 -23.28419 -22.18650 -21.77074 -20.29909 -17.86669 -17.37090 -16.92769 -16.31968 -16.18803 -15.32154 -15.09551 -14.62436 -14.51061 -14.43263 -13.77526 -13.73428 -13.39165 -13.01706 -12.68281 -12.54898 -12.33213 -12.20947 -12.13766 -12.00488 -11.73023 -11.40417 -11.35987 -11.25016 -11.03532 -10.95178 -10.61777 -10.07165 -9.94608 -9.84320 -9.68257 -9.29717 -8.61522 -7.81864 -6.11078 -4.10346 0.63425 1.47545 1.67579 2.19602 2.42810 3.23917 3.32266 3.33841 3.49637 3.78536 4.01577 4.11671 4.34872 4.37680 4.49784 4.67582 4.79014 4.87739 4.91811 5.00864 5.15491 5.17931 5.19571 5.24085 5.27466 5.29380 5.45145 5.52235 5.59958 5.71781 5.80181 5.85877 6.27079 6.36521 6.69231 7.13962 7.26473 7.69010 8.36764 8.45469 8.93608 9.50127 11.02313 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.003151 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.523546 B = 8883.890341 C = 9947.948936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.137 4.137 4 C 0.106 3.894 5 N -0.297 5.297 6 N -0.092 5.092 7 N -0.076 5.076 8 N -0.287 5.287 9 C 0.204 3.796 10 C -0.022 4.022 11 S -0.234 6.234 12 C -0.079 4.079 13 C -0.088 4.088 14 C -0.006 4.006 15 C -0.523 4.523 16 H 0.073 0.927 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.018 0.982 39 H 0.013 0.987 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.222 2.061 -18.375 25.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.175 4.175 4 C -0.015 4.015 5 N -0.099 5.099 6 N -0.078 5.078 7 N -0.069 5.069 8 N -0.138 5.138 9 C -0.074 4.074 10 C -0.173 4.173 11 S -0.008 6.008 12 C -0.227 4.227 13 C -0.127 4.127 14 C -0.045 4.045 15 C -0.561 4.561 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.190 1.190 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.896 2.799 -19.841 25.577 hybrid contribution -2.085 -0.526 1.892 2.864 sum -17.981 2.274 -17.949 25.508 Atomic orbital electron populations 1.21752 0.94958 1.02243 1.02095 1.21449 0.96728 0.94588 1.03162 1.22047 0.92084 0.99398 1.04001 1.22473 0.96185 0.75527 1.07292 1.48545 1.42739 1.14706 1.03932 1.78861 1.16003 1.00260 1.12636 1.78642 1.14382 1.10224 1.03670 1.75066 1.17599 1.17665 1.03457 1.25018 1.00909 0.88646 0.92801 1.21697 1.01268 1.05694 0.88634 1.87399 1.18073 1.78636 1.16644 1.23775 1.04165 1.03899 0.90895 1.21299 0.93882 0.99892 0.97655 1.19562 0.97700 0.96439 0.90814 1.21088 0.98611 1.39581 0.96866 0.90892 1.25030 0.96174 0.94539 0.97697 1.69911 1.29016 1.41348 1.13714 0.86773 0.83934 0.79046 0.79483 1.20279 1.21296 1.19030 0.92590 0.92110 0.92498 0.91118 0.90932 0.90398 0.90821 0.86453 0.86653 0.85878 0.87527 0.89825 0.90079 0.91697 0.91496 0.96358 0.96873 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.12 -0.47 5.93 -26.73 -0.16 -0.63 16 3 C -0.14 -0.66 5.54 -26.73 -0.15 -0.81 16 4 C 0.11 0.64 6.06 -4.04 -0.02 0.62 16 5 N -0.30 -3.06 3.35 -58.27 -0.19 -3.25 16 6 N -0.09 -1.19 13.29 60.35 0.80 -0.39 16 7 N -0.08 -1.14 13.43 60.35 0.81 -0.33 16 8 N -0.29 -4.22 12.36 32.70 0.40 -3.81 16 9 C 0.20 2.38 7.39 -155.43 -1.15 1.23 16 10 C -0.02 -0.21 6.08 36.00 0.22 0.01 16 11 S -0.23 -3.00 21.72 -107.50 -2.33 -5.34 16 12 C -0.08 -1.08 5.94 37.16 0.22 -0.86 16 13 C -0.09 -1.60 5.16 -26.73 -0.14 -1.74 16 14 C -0.01 -0.13 4.04 -27.89 -0.11 -0.24 16 15 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 16 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 19 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 23 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.12 0.60 7.75 -51.93 -0.40 0.20 16 31 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.12 1.07 8.14 -51.92 -0.42 0.65 16 33 H 0.11 0.68 7.81 -51.92 -0.41 0.28 16 34 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -32.73 349.99 -7.14 -39.88 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -6.66 Total: -6.05 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -1.35 Total: -15.65 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 2.60 Total: -34.30 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.33 Total: -5.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.73 -7.14 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532457447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.762 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds