Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 N 1.29014 * 126.43954 * 269.68745 * 5 4 3 7 7 N 1.28737 * 108.81027 * 179.83675 * 6 5 4 8 8 N 1.28841 * 109.39593 * 0.44217 * 7 6 5 9 9 C 1.31070 * 107.99132 * 359.73295 * 8 7 6 10 10 C 1.50696 * 126.66193 * 179.97438 * 9 8 7 11 11 S 1.81404 * 109.47200 * 270.03965 * 10 9 8 12 12 C 1.81397 * 103.00097 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47104 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.47342 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47539 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99855 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00312 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99832 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00016 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47015 * 89.99945 * 19 17 15 21 21 H 1.48498 * 109.47101 * 209.99780 * 19 17 15 22 22 H 1.48494 * 109.46994 * 329.99769 * 19 17 15 23 23 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 24 24 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 26 26 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 27 27 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 29 29 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 30 30 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 31 31 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 32 32 H 1.08999 * 109.47475 * 30.04141 * 10 9 8 33 33 H 1.09005 * 109.47216 * 150.04438 * 10 9 8 34 34 H 1.09000 * 109.47323 * 300.00237 * 12 11 10 35 35 H 1.09003 * 109.46853 * 60.00392 * 12 11 10 36 36 H 1.09000 * 109.47040 * 300.00186 * 13 12 11 37 37 H 1.08994 * 109.47110 * 59.99702 * 13 12 11 38 38 H 1.09000 * 109.46777 * 299.99823 * 14 13 12 39 39 H 1.08994 * 109.47689 * 59.99533 * 14 13 12 40 40 H 0.97000 * 119.99875 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0581 2.8239 0.0000 6 7 4.3193 3.5439 -1.0382 7 7 4.7227 4.7028 -0.6488 8 7 4.7355 4.7410 0.6389 9 6 4.3242 3.5782 1.0826 10 6 4.1782 3.1658 2.5246 11 16 5.7324 2.4311 3.1038 12 6 5.3652 2.0065 4.8287 13 6 6.5979 1.3661 5.4699 14 6 6.2881 1.0074 6.9245 15 6 7.5025 0.3772 7.5562 16 1 8.4050 0.2453 6.9778 17 6 7.4615 -0.0309 8.8725 18 7 8.5212 -0.5814 9.4236 19 14 5.9003 0.1966 9.8728 20 1 5.0424 -1.0073 9.7320 21 1 6.2522 0.3891 11.3026 22 1 5.1654 1.3887 9.3790 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 1.6764 1.9564 0.8900 30 1 3.9329 0.9289 0.8909 31 1 3.9336 0.9287 -0.8892 32 1 3.9418 4.0404 3.1306 33 1 3.3751 2.4341 2.6137 34 1 5.0993 2.9105 5.3767 35 1 4.5323 1.3041 4.8606 36 1 6.8643 0.4622 4.9220 37 1 7.4305 2.0688 5.4379 38 1 6.0216 1.9111 7.4727 39 1 5.4556 0.3046 6.9561 40 1 8.4922 -0.8689 10.3496 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532457447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = 65.219950 kcal Electronic energy + Delta-G solvation = -19280.225311 eV Core-core repulsion = 16257.287299 eV Total energy + Delta-G solvation = -3022.938011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.35625 -37.93655 -36.36901 -35.28459 -34.81074 -34.13361 -30.91551 -30.01956 -29.54642 -26.06068 -25.13843 -24.37338 -22.98123 -22.18039 -21.89604 -18.97848 -18.61749 -18.18897 -17.30324 -16.72664 -16.34344 -16.30708 -16.10523 -15.28556 -15.12753 -14.99285 -14.48275 -14.32806 -14.03504 -13.80280 -13.73522 -13.52167 -13.32351 -12.97020 -12.83965 -12.63721 -12.50973 -12.27669 -12.03156 -11.95019 -11.78960 -11.67177 -11.55418 -11.53861 -11.33943 -11.14875 -10.84615 -10.74072 -8.79170 -8.26873 -6.32336 -0.26480 0.54770 0.93240 1.22681 1.39817 1.43011 1.50566 1.54306 2.39454 2.69792 3.07547 3.08988 3.58484 3.59937 3.98633 4.01840 4.05519 4.09900 4.13348 4.20103 4.28705 4.34913 4.53236 4.55945 4.59346 4.80290 4.81009 4.85828 4.89206 4.91229 5.03431 5.13069 5.23564 5.29205 5.43551 5.49231 5.57109 5.67625 6.29718 6.76721 7.32485 7.40727 8.90358 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.003151 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.523546 B = 8883.890341 C = 9947.948936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.128 4.128 4 C 0.096 3.904 5 N -0.284 5.284 6 N -0.099 5.099 7 N -0.108 5.108 8 N -0.319 5.319 9 C 0.205 3.795 10 C -0.007 4.007 11 S -0.270 6.270 12 C -0.066 4.066 13 C -0.082 4.082 14 C -0.004 4.004 15 C -0.537 4.537 16 H 0.026 0.974 17 C -0.001 4.001 18 N -0.956 5.956 19 Si 0.956 3.044 20 H -0.263 1.263 21 H -0.290 1.290 22 H -0.238 1.238 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.147 0.853 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.046 0.954 38 H 0.027 0.973 39 H 0.031 0.969 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.527 1.894 -18.255 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.167 4.167 4 C -0.023 4.023 5 N -0.087 5.087 6 N -0.085 5.085 7 N -0.101 5.101 8 N -0.170 5.170 9 C -0.073 4.073 10 C -0.158 4.158 11 S -0.044 6.044 12 C -0.214 4.214 13 C -0.121 4.121 14 C -0.043 4.043 15 C -0.575 4.575 16 H 0.044 0.956 17 C -0.197 4.197 18 N -0.597 5.597 19 Si 0.779 3.221 20 H -0.188 1.188 21 H -0.216 1.216 22 H -0.161 1.161 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.209 2.626 -19.747 27.673 hybrid contribution -0.982 -0.540 1.753 2.081 sum -20.191 2.085 -17.994 27.126 Atomic orbital electron populations 1.21771 0.95253 1.02342 1.01918 1.21436 0.96377 0.93873 1.03862 1.21993 0.90885 1.00050 1.03764 1.22931 0.97086 0.73501 1.08784 1.48856 1.41342 1.15525 1.03004 1.78777 1.15913 1.00134 1.13632 1.78614 1.15982 1.11362 1.04179 1.74974 1.18780 1.19669 1.03544 1.25285 1.00185 0.88073 0.93799 1.21828 0.99916 1.07045 0.86972 1.87575 1.21252 1.79238 1.16359 1.23502 1.02167 1.04735 0.90987 1.21045 0.95726 0.99457 0.95875 1.19496 0.95456 0.96488 0.92854 1.21523 0.99267 1.39668 0.97030 0.95606 1.26128 1.00286 0.94104 0.99212 1.70094 1.32041 1.43238 1.14304 0.85570 0.79075 0.80449 0.77003 1.18803 1.21591 1.16077 0.92934 0.91895 0.92562 0.90590 0.90113 0.91400 0.90377 0.84784 0.85457 0.84611 0.83524 0.88539 0.87378 0.92741 0.93470 0.95500 0.95073 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.91 71.98 0.71 -0.24 16 2 C -0.12 -0.57 5.93 30.60 0.18 -0.38 16 3 C -0.13 -0.88 5.54 30.60 0.17 -0.71 16 4 C 0.10 0.89 6.06 86.38 0.52 1.41 16 5 N -0.28 -5.28 3.35 -338.26 -1.13 -6.42 16 6 N -0.10 -2.47 13.29 37.02 0.49 -1.97 16 7 N -0.11 -3.24 13.43 37.01 0.50 -2.74 16 8 N -0.32 -9.08 12.36 -50.45 -0.62 -9.71 16 9 C 0.20 4.32 7.39 138.13 1.02 5.34 16 10 C -0.01 -0.11 6.08 71.23 0.43 0.32 16 11 S -0.27 -6.26 21.72 -56.49 -1.23 -7.49 16 12 C -0.07 -1.57 5.94 71.98 0.43 -1.14 16 13 C -0.08 -2.88 5.16 30.59 0.16 -2.72 16 14 C 0.00 -0.16 4.04 29.85 0.12 -0.04 16 15 C -0.54 -30.10 9.66 25.60 0.25 -29.85 16 16 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 17 C 0.00 -0.06 5.47 84.65 0.46 0.40 16 18 N -0.96 -59.52 13.96 21.45 0.30 -59.22 16 19 Si 0.96 41.92 27.47 68.60 1.88 43.80 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 23 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.13 0.86 7.75 -2.39 -0.02 0.84 16 31 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.15 1.09 7.81 -2.39 -0.02 1.07 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 39 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 40 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -74.23 349.99 5.60 -68.63 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 0.95 Total: 2.71 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 4.46 Total: -27.60 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -0.47 Total: -80.06 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.80 kcal Atomic # 16 Polarization: -6.26 SS G_CDS: -1.23 Total: -7.49 kcal Total: -74.23 5.60 -68.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532457447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.854 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds