Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 119.99815 * 2 1 4 4 O 1.21587 * 119.99872 * 184.84878 * 3 2 1 5 5 N 1.34778 * 120.00484 * 4.84904 * 3 2 1 6 6 C 1.46500 * 120.00230 * 185.05220 * 5 3 2 7 7 C 1.53000 * 109.46734 * 174.98736 * 6 5 3 8 8 C 1.50697 * 115.55359 * 305.95735 * 7 6 5 9 9 H 1.07997 * 119.99637 * 144.41519 * 8 7 6 10 10 C 1.37874 * 119.99910 * 324.41786 * 8 7 6 11 11 N 1.31514 * 120.00257 * 4.37364 * 10 8 7 12 12 Si 1.86804 * 119.99959 * 184.37963 * 10 8 7 13 13 H 1.48492 * 109.47255 * 89.99688 * 12 10 8 14 14 H 1.48506 * 109.46838 * 210.00078 * 12 10 8 15 15 H 1.48499 * 109.46995 * 329.99533 * 12 10 8 16 16 C 1.53000 * 117.49316 * 160.28929 * 7 6 5 17 17 C 1.53001 * 117.49709 * 91.63264 * 7 6 5 18 18 C 1.46496 * 119.99959 * 179.97438 * 2 1 3 19 19 H 1.09000 * 110.75552 * 179.30042 * 18 2 1 20 20 C 1.54378 * 110.84706 * 55.82691 * 18 2 1 21 21 O 1.43237 * 107.59334 * 220.45116 * 20 18 2 22 22 C 1.43651 * 109.96758 * 358.29099 * 21 20 18 23 23 C 1.55206 * 105.26206 * 24.28471 * 22 21 20 24 24 H 1.08999 * 111.05701 * 81.64267 * 23 22 21 25 25 O 1.42903 * 111.30469 * 205.88979 * 23 22 21 26 26 H 1.08994 * 109.47488 * 94.10298 * 1 2 3 27 27 H 1.09001 * 109.47378 * 214.10860 * 1 2 3 28 28 H 1.09002 * 109.47364 * 334.10469 * 1 2 3 29 29 H 0.97003 * 119.99737 * 5.33340 * 5 3 2 30 30 H 1.09000 * 109.46855 * 294.98961 * 6 5 3 31 31 H 1.08997 * 109.46664 * 54.99005 * 6 5 3 32 32 H 0.96994 * 120.00237 * 185.00511 * 11 10 8 33 33 H 1.09001 * 117.50481 * 0.02562 * 16 7 6 34 34 H 1.09004 * 117.49529 * 145.02183 * 16 7 6 35 35 H 1.09001 * 117.49540 * 214.97561 * 17 7 6 36 36 H 1.08996 * 117.50207 * 359.97323 * 17 7 6 37 37 H 1.08995 * 109.83119 * 339.96831 * 20 18 2 38 38 H 1.09006 * 109.83349 * 100.94136 * 20 18 2 39 39 H 1.08999 * 110.30938 * 143.34069 * 22 21 20 40 40 H 1.09005 * 110.30561 * 265.41412 * 22 21 20 41 41 H 0.96699 * 113.99275 * 291.51883 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1691 -0.0890 5 7 1.4686 2.3324 0.0987 6 6 2.1887 3.6033 -0.0125 7 6 1.1876 4.7601 0.0086 8 6 0.0805 4.6803 -1.0107 9 1 -0.9087 5.0354 -0.7623 10 6 0.3306 4.1541 -2.2603 11 7 1.5110 3.6432 -2.5345 12 14 -1.0073 4.1669 -3.5640 13 1 -0.9211 5.4243 -4.3492 14 1 -0.8268 3.0041 -4.4698 15 1 -2.3374 4.0824 -2.9091 16 6 1.7207 6.1492 0.3654 17 6 0.8542 5.3811 1.3666 18 6 2.1975 -1.2687 0.0006 19 1 3.2733 -1.0936 -0.0120 20 6 1.7704 -2.1502 -1.1927 21 8 1.6812 -3.5006 -0.7233 22 6 2.0544 -3.5639 0.6624 23 6 1.7934 -2.1397 1.2213 24 1 0.7410 -2.0034 1.4700 25 8 2.6266 -1.8638 2.3491 26 1 -0.3634 -0.0735 -1.0249 27 1 -0.3634 -0.8509 0.5763 28 1 -0.3634 0.9245 0.4488 29 1 0.5101 2.3294 0.2473 30 1 2.8786 3.7045 0.8253 31 1 2.7477 3.6235 -0.9480 32 1 1.7110 3.3393 -3.4336 33 1 2.7846 6.2390 0.5846 34 1 1.2703 7.0053 -0.1369 35 1 -0.1659 5.7323 1.5226 36 1 1.3477 4.9653 2.2450 37 1 0.7996 -1.8233 -1.5651 38 1 2.5140 -2.0832 -1.9868 39 1 1.4399 -4.2957 1.1867 40 1 3.1099 -3.8186 0.7587 41 1 2.4105 -2.3849 3.1345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561523587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = -75.771950 kcal Electronic energy + Delta-G solvation = -23798.411154 eV Core-core repulsion = 20294.313653 eV Total energy + Delta-G solvation = -3504.097501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28061 -38.76745 -36.75762 -36.31533 -34.82917 -33.04495 -32.17455 -29.94359 -28.72447 -26.68181 -25.82208 -25.05901 -22.71634 -21.42762 -21.14052 -19.30305 -19.07847 -18.19657 -17.31277 -16.72279 -16.17834 -15.69490 -15.25601 -15.03757 -14.74561 -14.69618 -13.92674 -13.71012 -13.28202 -13.21675 -13.02382 -12.80508 -12.65499 -12.48008 -12.03764 -11.73610 -11.58362 -11.37494 -11.11919 -10.90832 -10.71295 -10.52762 -10.29015 -10.24275 -9.72274 -9.63179 -9.27011 -8.95683 -8.82757 -8.35587 -8.27964 -7.66770 -5.99490 -4.19443 3.08564 3.20442 3.29586 3.30009 3.52004 3.96046 4.26352 4.28797 4.37544 4.70748 4.72366 4.83022 5.02992 5.09274 5.15668 5.29596 5.45224 5.47688 5.57985 5.68730 5.77172 5.93799 6.01581 6.05342 6.32348 6.55458 6.62856 6.67239 6.76177 6.84242 6.92304 7.08937 7.26308 7.43701 7.50290 7.64056 7.78872 8.00214 8.31816 8.76475 8.93989 9.43743 9.49159 10.89726 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.005373 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.532909 B = 5210.360795 C = 6081.875643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.629 5.629 3 C 0.709 3.291 4 O -0.601 6.601 5 N -0.696 5.696 6 C 0.183 3.817 7 C 0.035 3.965 8 C -0.496 4.496 9 H 0.060 0.940 10 C 0.075 3.925 11 N -0.863 5.863 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.198 4.198 17 C -0.213 4.213 18 C 0.140 3.860 19 H 0.124 0.876 20 C 0.041 3.959 21 O -0.377 6.377 22 C 0.022 3.978 23 C 0.053 3.947 24 H 0.079 0.921 25 O -0.542 6.542 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.393 0.607 30 H 0.015 0.985 31 H 0.113 0.887 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 -11.902 6.579 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.367 5.367 3 C 0.411 3.589 4 O -0.481 6.481 5 N -0.348 5.348 6 C 0.059 3.941 7 C 0.035 3.965 8 C -0.533 4.533 9 H 0.078 0.922 10 C -0.129 4.129 11 N -0.499 5.499 12 Si 0.718 3.282 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.237 4.237 17 C -0.250 4.250 18 C 0.033 3.967 19 H 0.142 0.858 20 C -0.036 4.036 21 O -0.295 6.295 22 C -0.055 4.055 23 C -0.008 4.008 24 H 0.097 0.903 25 O -0.346 6.346 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.228 0.772 30 H 0.033 0.967 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.637 -11.728 5.789 13.181 hybrid contribution -1.506 -0.062 -0.178 1.517 sum -3.143 -11.790 5.611 13.430 Atomic orbital electron populations 1.21668 0.80373 1.02526 1.01759 1.46738 1.05694 1.04176 1.80142 1.15777 0.85163 0.80204 0.77782 1.90821 1.12180 1.86067 1.59012 1.44897 1.11246 1.04121 1.74490 1.20948 0.92569 0.79448 1.01095 1.19264 0.96249 0.89440 0.91594 1.20479 0.94881 1.41201 0.96787 0.92207 1.24990 0.95688 0.93816 0.98415 1.69909 1.20778 1.39132 1.20070 0.86617 0.82077 0.77721 0.81766 1.20576 1.21248 1.19889 1.22934 0.96901 0.98834 1.04990 1.22954 0.99237 1.08480 0.94329 1.22119 1.00121 0.83184 0.91249 0.85788 1.23492 1.02689 0.80882 0.96580 1.88434 1.89572 1.26887 1.24645 1.24030 1.01216 0.97346 0.82928 1.23957 0.94865 0.93949 0.88004 0.90317 1.86655 1.58971 1.66763 1.22253 0.92586 0.91994 0.90578 0.77175 0.96670 0.86945 0.92770 0.91433 0.90234 0.90699 0.91355 0.90128 0.90048 0.89456 0.91049 0.77637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 9.34 59.85 0.56 1.67 16 2 N -0.63 -10.88 2.89 -177.43 -0.51 -11.39 16 3 C 0.71 15.65 8.27 -86.92 -0.72 14.93 16 4 O -0.60 -15.46 15.73 5.29 0.08 -15.37 16 5 N -0.70 -15.34 4.91 -65.23 -0.32 -15.66 16 6 C 0.18 4.42 4.60 -4.04 -0.02 4.40 16 7 C 0.04 0.83 2.04 -155.66 -0.32 0.51 16 8 C -0.50 -12.44 8.43 -34.44 -0.29 -12.73 16 9 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 10 C 0.08 1.91 5.31 -17.82 -0.09 1.81 16 11 N -0.86 -22.89 10.12 55.43 0.56 -22.33 16 12 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 C -0.20 -4.32 9.96 -26.69 -0.27 -4.59 16 17 C -0.21 -4.42 9.92 -26.69 -0.26 -4.69 16 18 C 0.14 2.16 3.14 -65.98 -0.21 1.95 16 19 H 0.12 2.26 7.01 -51.93 -0.36 1.90 16 20 C 0.04 0.56 7.43 37.88 0.28 0.85 16 21 O -0.38 -4.93 11.36 -35.23 -0.40 -5.33 16 22 C 0.02 0.23 7.53 38.33 0.29 0.52 16 23 C 0.05 0.63 4.05 -24.34 -0.10 0.54 16 24 H 0.08 0.84 6.21 -51.93 -0.32 0.51 16 25 O -0.54 -6.70 13.49 -35.23 -0.48 -7.18 16 26 H 0.06 0.77 7.70 -51.93 -0.40 0.37 16 27 H 0.06 0.67 6.22 -51.93 -0.32 0.35 16 28 H 0.08 1.06 5.94 -51.93 -0.31 0.76 16 29 H 0.39 8.10 5.69 -40.82 -0.23 7.87 16 30 H 0.02 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.11 3.10 5.94 -51.93 -0.31 2.79 16 32 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.07 6.73 -51.93 -0.35 0.72 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.38 2.58 9.12 45.56 0.42 3.00 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -31.13 331.17 -7.36 -38.49 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.12 Total: 13.77 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.15 Total: 5.17 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.27 Total: -49.38 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.79 Total: -27.88 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.13 -7.36 -38.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561523587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.286 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds