Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 119.99815 * 2 1 4 4 O 1.21587 * 119.99872 * 184.84878 * 3 2 1 5 5 N 1.34778 * 120.00484 * 4.84904 * 3 2 1 6 6 C 1.46500 * 120.00230 * 185.05220 * 5 3 2 7 7 C 1.53000 * 109.46734 * 174.98736 * 6 5 3 8 8 C 1.50697 * 115.55359 * 305.95735 * 7 6 5 9 9 H 1.07997 * 119.99637 * 144.41519 * 8 7 6 10 10 C 1.37874 * 119.99910 * 324.41786 * 8 7 6 11 11 N 1.31514 * 120.00257 * 4.37364 * 10 8 7 12 12 Si 1.86804 * 119.99959 * 184.37963 * 10 8 7 13 13 H 1.48492 * 109.47255 * 89.99688 * 12 10 8 14 14 H 1.48506 * 109.46838 * 210.00078 * 12 10 8 15 15 H 1.48499 * 109.46995 * 329.99533 * 12 10 8 16 16 C 1.53000 * 117.49316 * 160.28929 * 7 6 5 17 17 C 1.53001 * 117.49709 * 91.63264 * 7 6 5 18 18 C 1.46496 * 119.99959 * 179.97438 * 2 1 3 19 19 H 1.09000 * 110.75552 * 179.30042 * 18 2 1 20 20 C 1.54378 * 110.84706 * 55.82691 * 18 2 1 21 21 O 1.43237 * 107.59334 * 220.45116 * 20 18 2 22 22 C 1.43651 * 109.96758 * 358.29099 * 21 20 18 23 23 C 1.55206 * 105.26206 * 24.28471 * 22 21 20 24 24 H 1.08999 * 111.05701 * 81.64267 * 23 22 21 25 25 O 1.42903 * 111.30469 * 205.88979 * 23 22 21 26 26 H 1.08994 * 109.47488 * 94.10298 * 1 2 3 27 27 H 1.09001 * 109.47378 * 214.10860 * 1 2 3 28 28 H 1.09002 * 109.47364 * 334.10469 * 1 2 3 29 29 H 0.97003 * 119.99737 * 5.33340 * 5 3 2 30 30 H 1.09000 * 109.46855 * 294.98961 * 6 5 3 31 31 H 1.08997 * 109.46664 * 54.99005 * 6 5 3 32 32 H 0.96994 * 120.00237 * 185.00511 * 11 10 8 33 33 H 1.09001 * 117.50481 * 0.02562 * 16 7 6 34 34 H 1.09004 * 117.49529 * 145.02183 * 16 7 6 35 35 H 1.09001 * 117.49540 * 214.97561 * 17 7 6 36 36 H 1.08996 * 117.50207 * 359.97323 * 17 7 6 37 37 H 1.08995 * 109.83119 * 339.96831 * 20 18 2 38 38 H 1.09006 * 109.83349 * 100.94136 * 20 18 2 39 39 H 1.08999 * 110.30938 * 143.34069 * 22 21 20 40 40 H 1.09005 * 110.30561 * 265.41412 * 22 21 20 41 41 H 0.96699 * 113.99275 * 291.51883 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1691 -0.0890 5 7 1.4686 2.3324 0.0987 6 6 2.1887 3.6033 -0.0125 7 6 1.1876 4.7601 0.0086 8 6 0.0805 4.6803 -1.0107 9 1 -0.9087 5.0354 -0.7623 10 6 0.3306 4.1541 -2.2603 11 7 1.5110 3.6432 -2.5345 12 14 -1.0073 4.1669 -3.5640 13 1 -0.9211 5.4243 -4.3492 14 1 -0.8268 3.0041 -4.4698 15 1 -2.3374 4.0824 -2.9091 16 6 1.7207 6.1492 0.3654 17 6 0.8542 5.3811 1.3666 18 6 2.1975 -1.2687 0.0006 19 1 3.2733 -1.0936 -0.0120 20 6 1.7704 -2.1502 -1.1927 21 8 1.6812 -3.5006 -0.7233 22 6 2.0544 -3.5639 0.6624 23 6 1.7934 -2.1397 1.2213 24 1 0.7410 -2.0034 1.4700 25 8 2.6266 -1.8638 2.3491 26 1 -0.3634 -0.0735 -1.0249 27 1 -0.3634 -0.8509 0.5763 28 1 -0.3634 0.9245 0.4488 29 1 0.5101 2.3294 0.2473 30 1 2.8786 3.7045 0.8253 31 1 2.7477 3.6235 -0.9480 32 1 1.7110 3.3393 -3.4336 33 1 2.7846 6.2390 0.5846 34 1 1.2703 7.0053 -0.1369 35 1 -0.1659 5.7323 1.5226 36 1 1.3477 4.9653 2.2450 37 1 0.7996 -1.8233 -1.5651 38 1 2.5140 -2.0832 -1.9868 39 1 1.4399 -4.2957 1.1867 40 1 3.1099 -3.8186 0.7587 41 1 2.4105 -2.3849 3.1345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561523587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -99.696159 kcal Electronic energy + Delta-G solvation = -23799.448586 eV Core-core repulsion = 20294.313653 eV Total energy + Delta-G solvation = -3505.134933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55226 -40.19817 -38.51105 -37.26949 -36.30158 -34.77895 -34.09439 -31.11892 -29.70010 -28.08590 -27.61043 -26.81937 -23.71921 -22.99511 -22.53195 -21.13068 -20.53830 -19.61941 -18.53095 -18.01181 -17.80557 -16.90813 -16.73955 -16.45559 -16.32128 -15.96411 -15.59344 -15.15092 -14.71855 -14.54842 -14.35207 -14.08576 -13.96855 -13.59472 -13.51205 -13.36597 -13.16130 -12.93254 -12.76428 -12.52333 -12.29062 -12.02436 -11.92439 -11.54062 -11.24612 -11.06361 -10.82173 -10.65794 -10.59606 -10.15374 -9.90546 -9.31819 -7.91721 -6.17205 1.42978 1.47691 1.54861 1.68449 2.32265 2.43390 2.58546 2.99991 3.27206 3.30600 3.39881 3.67495 3.71829 3.86769 4.05921 4.10425 4.23408 4.29532 4.54232 4.56283 4.64991 4.70241 4.71922 4.75343 4.81228 4.83430 4.90024 4.97385 5.13186 5.28703 5.53480 5.54754 5.61992 5.79163 5.92346 5.99200 6.07770 6.39702 6.81354 6.84408 7.25281 7.47907 7.78913 8.94815 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.005373 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.532909 B = 5210.360795 C = 6081.875643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.622 5.622 3 C 0.702 3.298 4 O -0.648 6.648 5 N -0.692 5.692 6 C 0.195 3.805 7 C 0.007 3.993 8 C -0.500 4.500 9 H 0.060 0.940 10 C 0.037 3.963 11 N -0.888 5.888 12 Si 0.948 3.052 13 H -0.284 1.284 14 H -0.292 1.292 15 H -0.262 1.262 16 C -0.199 4.199 17 C -0.185 4.185 18 C 0.126 3.874 19 H 0.086 0.914 20 C 0.051 3.949 21 O -0.384 6.384 22 C 0.025 3.975 23 C 0.065 3.935 24 H 0.101 0.899 25 O -0.567 6.567 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.400 0.600 30 H 0.008 0.992 31 H 0.076 0.924 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.070 0.930 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -13.045 7.734 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.360 5.360 3 C 0.403 3.597 4 O -0.531 6.531 5 N -0.344 5.344 6 C 0.071 3.929 7 C 0.006 3.994 8 C -0.538 4.538 9 H 0.078 0.922 10 C -0.165 4.165 11 N -0.525 5.525 12 Si 0.774 3.226 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.186 1.186 16 C -0.238 4.238 17 C -0.223 4.223 18 C 0.021 3.979 19 H 0.104 0.896 20 C -0.027 4.027 21 O -0.303 6.303 22 C -0.051 4.051 23 C 0.005 3.995 24 H 0.119 0.881 25 O -0.376 6.376 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.237 0.763 30 H 0.026 0.974 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.088 0.912 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.943 -12.910 6.979 15.196 hybrid contribution -0.768 0.275 -0.474 0.943 sum -4.711 -12.635 6.506 14.972 Atomic orbital electron populations 1.21914 0.77900 1.04169 1.02751 1.46712 1.07158 1.03276 1.78850 1.16026 0.84782 0.81350 0.77542 1.90779 1.14381 1.86971 1.60973 1.44731 1.11385 1.03672 1.74595 1.20598 0.92678 0.80913 0.98754 1.19300 0.96547 0.89988 0.93572 1.20658 0.95134 1.40752 0.97208 0.92189 1.25583 0.97144 0.93696 1.00069 1.70109 1.22400 1.40243 1.19756 0.85718 0.80416 0.76998 0.79440 1.21036 1.21817 1.18621 1.22961 0.97654 0.97817 1.05344 1.22942 0.99699 1.06263 0.93352 1.22251 0.98057 0.83097 0.94544 0.89581 1.23307 1.02661 0.81135 0.95591 1.88429 1.89654 1.25995 1.26220 1.24197 1.02115 0.97174 0.81663 1.23860 0.95589 0.93445 0.86655 0.88104 1.86607 1.59581 1.67879 1.23486 0.92264 0.88123 0.90791 0.76340 0.97412 0.90663 0.93597 0.90808 0.90234 0.89508 0.89995 0.89309 0.91089 0.85719 0.91185 0.74797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 9.34 127.77 1.19 3.10 16 2 N -0.62 -21.33 2.89 -833.54 -2.41 -23.74 16 3 C 0.70 31.70 8.27 179.05 1.48 33.18 16 4 O -0.65 -34.90 15.73 -3.99 -0.06 -34.97 16 5 N -0.69 -30.87 4.91 -478.54 -2.35 -33.22 16 6 C 0.20 9.66 4.60 86.38 0.40 10.05 16 7 C 0.01 0.31 2.04 -52.93 -0.11 0.20 16 8 C -0.50 -24.75 8.43 25.60 0.22 -24.53 16 9 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 10 C 0.04 1.85 5.31 84.65 0.45 2.30 16 11 N -0.89 -48.16 10.12 21.45 0.22 -47.94 16 12 Si 0.95 40.54 29.54 68.60 2.03 42.57 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 14 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 16 C -0.20 -8.52 9.96 30.62 0.30 -8.22 16 17 C -0.19 -7.35 9.92 30.62 0.30 -7.05 16 18 C 0.13 3.87 3.14 46.25 0.15 4.01 16 19 H 0.09 3.31 7.01 -2.39 -0.02 3.29 16 20 C 0.05 1.35 7.43 72.45 0.54 1.89 16 21 O -0.38 -9.21 11.36 -148.98 -1.69 -10.90 16 22 C 0.03 0.46 7.53 72.74 0.55 1.00 16 23 C 0.07 1.40 4.05 32.15 0.13 1.53 16 24 H 0.10 1.73 6.21 -2.39 -0.01 1.71 16 25 O -0.57 -13.03 13.49 -148.98 -2.01 -15.04 16 26 H 0.06 1.50 7.70 -2.39 -0.02 1.48 16 27 H 0.10 1.79 6.22 -2.39 -0.01 1.77 16 28 H 0.07 1.93 5.94 -2.39 -0.01 1.92 16 29 H 0.40 16.36 5.69 -92.71 -0.53 15.83 16 30 H 0.01 0.39 8.09 -2.39 -0.02 0.37 16 31 H 0.08 4.34 5.94 -2.39 -0.01 4.32 16 32 H 0.25 13.68 8.32 -92.71 -0.77 12.91 16 33 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 35 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.09 2.21 6.73 -2.39 -0.02 2.19 16 38 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.40 4.43 9.12 -74.06 -0.68 3.76 16 Total: -1.00 -68.72 331.17 -0.82 -69.54 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -0.14 Total: 36.23 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 5.60 Total: 17.48 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.54 Total: -104.90 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -3.77 Total: -60.92 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -68.72 -0.82 -69.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561523587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.155 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds