Wall clock time and date at job start Tue Mar 31 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 N 1.40584 * 127.38851 * 90.02745 * 5 4 2 7 7 N 1.28907 * 106.83488 * 179.97438 * 6 5 4 8 8 N 1.28417 * 110.34310 * 359.97438 * 7 6 5 9 9 C 1.31556 * 110.49781 * 359.72305 * 8 7 6 10 10 S 1.76201 * 126.45304 * 180.28186 * 9 8 7 11 11 C 1.81005 * 99.99863 * 0.18742 * 10 9 8 12 12 C 1.53002 * 109.46870 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46906 * 299.99472 * 12 11 10 14 14 C 1.52998 * 109.47218 * 59.99856 * 12 11 10 15 15 C 1.50698 * 109.47199 * 179.97438 * 12 11 10 16 16 H 1.08008 * 119.99782 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00080 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00241 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99858 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47264 * 89.99710 * 19 17 15 21 21 H 1.48494 * 109.47250 * 209.99743 * 19 17 15 22 22 H 1.48494 * 109.47153 * 330.00076 * 19 17 15 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 31 31 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 32 32 H 1.08998 * 109.47103 * 299.99580 * 11 10 9 33 33 H 1.09000 * 109.47162 * 59.99793 * 11 10 9 34 34 H 1.09005 * 109.47322 * 60.00386 * 13 12 11 35 35 H 1.09004 * 109.46885 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47430 * 300.00443 * 13 12 11 37 37 H 1.08998 * 109.47350 * 60.00106 * 14 12 11 38 38 H 1.09000 * 109.46883 * 180.02562 * 14 12 11 39 39 H 1.09005 * 109.46975 * 299.99593 * 14 12 11 40 40 H 0.97003 * 120.00137 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 -2.1327 -1.1906 6 7 0.4725 -2.7152 -1.6852 7 7 0.5400 -3.9756 -1.4231 8 7 1.6386 -4.2471 -0.8162 9 6 2.3574 -3.1572 -0.6550 10 16 3.9375 -3.0498 0.1173 11 6 4.1919 -4.7875 0.5555 12 6 5.5411 -4.9436 1.2600 13 6 6.6611 -4.4844 0.3242 14 6 5.5552 -4.0901 2.5297 15 6 5.7526 -6.3902 1.6254 16 1 5.0001 -7.1250 1.3793 17 6 6.9071 -6.7760 2.2728 18 7 7.8240 -5.8817 2.5711 19 14 7.1689 -8.5691 2.7263 20 1 7.8572 -9.2666 1.6105 21 1 8.0031 -8.6530 3.9520 22 1 5.8547 -9.2133 2.9770 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -0.2617 -2.1370 31 1 3.1264 -0.6442 -1.2952 32 1 3.3942 -5.1146 1.2225 33 1 4.1813 -5.3956 -0.3491 34 1 6.5080 -3.4380 0.0603 35 1 7.6222 -4.5952 0.8263 36 1 6.6510 -5.0925 -0.5804 37 1 4.7573 -4.4173 3.1963 38 1 6.5165 -4.2010 3.0313 39 1 5.4020 -3.0436 2.2658 40 1 8.6364 -6.1532 3.0263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563443084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:31 Heat of formation + Delta-G solvation = 90.664936 kcal Electronic energy + Delta-G solvation = -20502.023192 eV Core-core repulsion = 17480.188559 eV Total energy + Delta-G solvation = -3021.834634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.64282 -37.28639 -36.12932 -33.49954 -31.99984 -31.60567 -27.67334 -27.43619 -26.44789 -25.81114 -25.21204 -23.37302 -22.82516 -20.75362 -19.16928 -17.73892 -16.71264 -16.41145 -16.08472 -15.41040 -14.79928 -14.36668 -14.28781 -13.72199 -13.44377 -13.22399 -12.93051 -12.66068 -12.50717 -12.23780 -11.98202 -11.91398 -11.60934 -11.37664 -11.33360 -11.14725 -10.98830 -10.93247 -10.71591 -10.61517 -10.42239 -10.38449 -10.21829 -10.10959 -9.68203 -9.57501 -8.80027 -8.45803 -7.56521 -6.07846 -4.18729 1.06844 1.11832 2.21789 2.45353 2.57426 3.26162 3.33489 3.37883 4.16718 4.32218 4.36126 4.63563 4.69693 4.97356 5.05200 5.19203 5.25150 5.33435 5.42117 5.54077 5.54521 5.64142 5.76325 5.88530 5.90412 5.97580 6.00248 6.19759 6.40762 6.69136 6.77656 6.88108 6.91271 7.24200 7.46617 7.64417 7.91925 8.04538 8.28999 8.63086 8.80727 9.47397 10.93487 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.004206 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.427051 B = 6656.039825 C = 7289.833986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.126 3.874 5 N -0.368 5.368 6 N -0.098 5.098 7 N -0.040 5.040 8 N -0.337 5.337 9 C 0.218 3.782 10 S 0.017 5.983 11 C -0.074 4.074 12 C 0.080 3.920 13 C -0.136 4.136 14 C -0.136 4.136 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.015 0.985 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.089 0.911 39 H 0.015 0.985 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.445 13.916 -4.583 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.201 4.201 4 C 0.004 3.996 5 N -0.168 5.168 6 N -0.085 5.085 7 N -0.036 5.036 8 N -0.194 5.194 9 C -0.165 4.165 10 S 0.244 5.756 11 C -0.222 4.222 12 C 0.078 3.922 13 C -0.194 4.194 14 C -0.194 4.194 15 C -0.545 4.545 16 H 0.078 0.922 17 C -0.133 4.133 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.034 0.966 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.107 0.893 39 H 0.034 0.966 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.763 14.178 -4.797 16.861 hybrid contribution -0.045 -1.371 0.186 1.384 sum -7.808 12.807 -4.611 15.693 Atomic orbital electron populations 1.21850 0.94070 1.02512 1.02111 1.21538 0.97305 0.97052 0.97493 1.21760 1.01607 0.94115 1.02614 1.22188 1.01884 0.74529 1.00999 1.51541 1.13878 1.09368 1.41977 1.82339 1.02604 1.03171 1.20429 1.77813 1.11972 1.06272 1.07552 1.75012 1.01217 1.22835 1.20333 1.28480 1.02604 0.86598 0.98846 1.85983 1.03501 1.19837 1.66240 1.24333 1.05220 0.88141 1.04556 1.18103 0.85983 0.96627 0.91534 1.21942 1.03427 0.95573 0.98506 1.21937 1.03490 0.94817 0.99186 1.20975 1.03946 0.91564 1.38015 0.92204 1.24866 0.95704 0.97513 0.95261 1.69795 1.08588 1.32891 1.41014 0.86540 0.78282 0.84955 0.77949 1.20638 1.21203 1.19817 0.92442 0.92170 0.92212 0.89771 0.91608 0.91794 0.92195 0.87638 0.87542 0.89404 0.89428 0.96639 0.89234 0.95041 0.95030 0.89254 0.96624 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.07 37.16 0.34 -1.06 16 2 C -0.11 -1.02 3.13 -90.62 -0.28 -1.30 16 3 C -0.14 -0.92 9.19 37.16 0.34 -0.58 16 4 C 0.13 1.25 5.77 -4.05 -0.02 1.22 16 5 N -0.37 -5.30 3.27 -61.30 -0.20 -5.50 16 6 N -0.10 -1.61 13.08 60.35 0.79 -0.82 16 7 N -0.04 -0.75 13.38 60.35 0.81 0.05 16 8 N -0.34 -6.46 11.57 30.51 0.35 -6.11 16 9 C 0.22 3.65 8.15 -89.16 -0.73 2.92 16 10 S 0.02 0.28 18.83 -107.50 -2.02 -1.75 16 11 C -0.07 -1.46 4.18 37.16 0.16 -1.31 16 12 C 0.08 1.78 0.52 -155.66 -0.08 1.70 16 13 C -0.14 -2.99 8.01 37.16 0.30 -2.69 16 14 C -0.14 -2.98 8.01 37.16 0.30 -2.68 16 15 C -0.51 -12.76 8.01 -34.44 -0.28 -13.03 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 18 N -0.88 -22.91 9.35 55.43 0.52 -22.39 16 19 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H 0.06 0.69 6.99 -51.93 -0.36 0.33 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.11 0.93 7.84 -51.93 -0.41 0.52 16 32 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 33 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 34 H 0.01 0.29 6.91 -51.93 -0.36 -0.07 16 35 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 39 H 0.01 0.30 6.91 -51.93 -0.36 -0.06 16 40 H 0.26 6.54 8.31 -40.82 -0.34 6.21 16 LS Contribution 335.94 15.07 5.06 5.06 Total: -1.00 -27.26 335.94 -6.08 -33.33 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.31 Total: -1.96 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.05 Total: -15.15 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 2.27 Total: -34.77 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.02 Total: -1.75 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.26 -6.08 -33.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563443084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.998 kcal (2) G-P(sol) polarization free energy of solvation -27.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds