Wall clock time and date at job start Tue Mar 31 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 N 1.46494 * 109.47140 * 295.00115 * 4 2 1 6 6 N 1.40584 * 127.38851 * 90.02745 * 5 4 2 7 7 N 1.28907 * 106.83488 * 179.97438 * 6 5 4 8 8 N 1.28417 * 110.34310 * 359.97438 * 7 6 5 9 9 C 1.31556 * 110.49781 * 359.72305 * 8 7 6 10 10 S 1.76201 * 126.45304 * 180.28186 * 9 8 7 11 11 C 1.81005 * 99.99863 * 0.18742 * 10 9 8 12 12 C 1.53002 * 109.46870 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46906 * 299.99472 * 12 11 10 14 14 C 1.52998 * 109.47218 * 59.99856 * 12 11 10 15 15 C 1.50698 * 109.47199 * 179.97438 * 12 11 10 16 16 H 1.08008 * 119.99782 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00080 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00241 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99858 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47264 * 89.99710 * 19 17 15 21 21 H 1.48494 * 109.47250 * 209.99743 * 19 17 15 22 22 H 1.48494 * 109.47153 * 330.00076 * 19 17 15 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 26 26 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 28 28 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 30 30 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 31 31 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 32 32 H 1.08998 * 109.47103 * 299.99580 * 11 10 9 33 33 H 1.09000 * 109.47162 * 59.99793 * 11 10 9 34 34 H 1.09005 * 109.47322 * 60.00386 * 13 12 11 35 35 H 1.09004 * 109.46885 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47430 * 300.00443 * 13 12 11 37 37 H 1.08998 * 109.47350 * 60.00106 * 14 12 11 38 38 H 1.09000 * 109.46883 * 180.02562 * 14 12 11 39 39 H 1.09005 * 109.46975 * 299.99593 * 14 12 11 40 40 H 0.97003 * 120.00137 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 -2.1327 -1.1906 6 7 0.4725 -2.7152 -1.6852 7 7 0.5400 -3.9756 -1.4231 8 7 1.6386 -4.2471 -0.8162 9 6 2.3574 -3.1572 -0.6550 10 16 3.9375 -3.0498 0.1173 11 6 4.1919 -4.7875 0.5555 12 6 5.5411 -4.9436 1.2600 13 6 6.6611 -4.4844 0.3242 14 6 5.5552 -4.0901 2.5297 15 6 5.7526 -6.3902 1.6254 16 1 5.0001 -7.1250 1.3793 17 6 6.9071 -6.7760 2.2728 18 7 7.8240 -5.8817 2.5711 19 14 7.1689 -8.5691 2.7263 20 1 7.8572 -9.2666 1.6105 21 1 8.0031 -8.6530 3.9520 22 1 5.8547 -9.2133 2.9770 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6055 -0.2617 -2.1370 31 1 3.1264 -0.6442 -1.2952 32 1 3.3942 -5.1146 1.2225 33 1 4.1813 -5.3956 -0.3491 34 1 6.5080 -3.4380 0.0603 35 1 7.6222 -4.5952 0.8263 36 1 6.6510 -5.0925 -0.5804 37 1 4.7573 -4.4173 3.1963 38 1 6.5165 -4.2010 3.0313 39 1 5.4020 -3.0436 2.2658 40 1 8.6364 -6.1532 3.0263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563443084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:31 Heat of formation + Delta-G solvation = 76.981845 kcal Electronic energy + Delta-G solvation = -20502.616536 eV Core-core repulsion = 17480.188559 eV Total energy + Delta-G solvation = -3022.427977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.95182 -38.17389 -37.87944 -34.54532 -33.56839 -33.28675 -28.70187 -28.09760 -27.97499 -27.58277 -27.14937 -24.60030 -24.12171 -21.55185 -20.87728 -18.99965 -17.97422 -17.90192 -17.61780 -16.67925 -16.22086 -15.82527 -15.21003 -15.05134 -14.99148 -14.51996 -14.17718 -13.93744 -13.65156 -13.32828 -13.16970 -13.11681 -12.90812 -12.80084 -12.71739 -12.61178 -12.26172 -12.23610 -12.08664 -12.07579 -11.91435 -11.81501 -11.74595 -11.45112 -11.34231 -11.29953 -10.60649 -10.38107 -8.90449 -8.01199 -6.16985 -0.22622 -0.19548 1.01196 1.07682 1.16479 1.44691 1.48634 1.56280 2.48060 3.17099 3.23019 3.58197 3.67565 3.93139 4.02288 4.16549 4.23763 4.28775 4.33748 4.53187 4.57641 4.71957 4.75911 4.83230 4.98143 4.99498 5.03267 5.08071 5.12211 5.14648 5.18202 5.28968 5.41875 5.45846 5.65629 5.69665 6.12345 6.19740 6.42186 6.86108 7.29381 7.50770 8.97770 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.004206 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.427051 B = 6656.039825 C = 7289.833986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.111 3.889 5 N -0.350 5.350 6 N -0.092 5.092 7 N -0.065 5.065 8 N -0.366 5.366 9 C 0.205 3.795 10 S 0.071 5.929 11 C -0.077 4.077 12 C 0.073 3.927 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.524 4.524 16 H 0.048 0.952 17 C 0.031 3.969 18 N -0.899 5.899 19 Si 0.943 3.057 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.276 1.276 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 16.016 -5.147 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.195 4.195 4 C -0.009 4.009 5 N -0.150 5.150 6 N -0.079 5.079 7 N -0.061 5.061 8 N -0.224 5.224 9 C -0.178 4.178 10 S 0.299 5.701 11 C -0.226 4.226 12 C 0.071 3.929 13 C -0.185 4.185 14 C -0.185 4.185 15 C -0.564 4.564 16 H 0.066 0.934 17 C -0.169 4.169 18 N -0.537 5.537 19 Si 0.770 3.230 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.201 1.201 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.882 16.298 -5.363 18.882 hybrid contribution -0.073 -1.896 0.325 1.925 sum -7.955 14.402 -5.038 17.207 Atomic orbital electron populations 1.21846 0.94516 1.00761 1.03288 1.21531 0.96863 0.98445 0.96123 1.21741 1.02055 0.92085 1.03652 1.22779 1.03300 0.72142 1.02687 1.51828 1.12560 1.10467 1.40158 1.82240 1.03251 1.02652 1.19794 1.77800 1.12349 1.07198 1.08761 1.74922 1.01825 1.24460 1.21158 1.28457 1.02884 0.86937 0.99545 1.85537 1.02956 1.15526 1.66119 1.23971 1.03511 0.91413 1.03720 1.18077 0.87449 0.95276 0.92117 1.21796 1.01924 0.97021 0.97794 1.21793 1.01874 0.96215 0.98644 1.21262 1.03753 0.93207 1.38141 0.93394 1.25413 0.95727 1.00283 0.95469 1.69897 1.08681 1.33861 1.41282 0.85785 0.77860 0.81689 0.77634 1.20546 1.20915 1.20079 0.95524 0.91268 0.90880 0.91409 0.91137 0.91057 0.90661 0.85193 0.85757 0.90474 0.90402 0.94162 0.91618 0.95514 0.95535 0.91627 0.94170 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.07 71.98 0.65 -1.81 16 2 C -0.11 -1.66 3.13 -10.79 -0.03 -1.70 16 3 C -0.14 -1.28 9.19 71.98 0.66 -0.62 16 4 C 0.11 1.85 5.77 86.38 0.50 2.35 16 5 N -0.35 -9.45 3.27 -347.86 -1.14 -10.59 16 6 N -0.09 -2.92 13.08 37.02 0.48 -2.44 16 7 N -0.07 -2.44 13.38 37.02 0.50 -1.94 16 8 N -0.37 -13.97 11.57 -57.40 -0.66 -14.64 16 9 C 0.21 6.63 8.15 179.84 1.47 8.10 16 10 S 0.07 2.19 18.83 -56.49 -1.06 1.12 16 11 C -0.08 -3.02 4.18 71.98 0.30 -2.72 16 12 C 0.07 3.24 0.52 -52.93 -0.03 3.22 16 13 C -0.13 -5.48 8.01 71.98 0.58 -4.90 16 14 C -0.13 -5.48 8.01 71.98 0.58 -4.91 16 15 C -0.52 -26.76 8.01 25.60 0.21 -26.55 16 16 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 17 C 0.03 1.60 5.15 84.65 0.44 2.04 16 18 N -0.90 -46.77 9.35 21.45 0.20 -46.57 16 19 Si 0.94 41.75 29.54 68.60 2.03 43.78 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H 0.03 0.60 6.99 -2.39 -0.02 0.59 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.12 1.69 7.84 -2.39 -0.02 1.67 16 32 H 0.08 3.16 8.14 -2.40 -0.02 3.14 16 33 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.04 1.48 6.91 -2.38 -0.02 1.47 16 35 H 0.07 3.17 6.07 -2.38 -0.01 3.15 16 36 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 39 H 0.04 1.48 6.91 -2.38 -0.02 1.47 16 40 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16 Total: -1.00 -58.82 335.94 6.67 -52.15 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.02 Total: 6.62 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 5.31 Total: -27.50 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -0.62 Total: -76.17 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.06 Total: 1.12 kcal Total: -58.82 6.67 -52.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563443084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.130 kcal (2) G-P(sol) polarization free energy of solvation -58.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds