Wall clock time and date at job start Tue Mar 31 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46728 * 226.81009 * 3 2 1 5 5 N 1.46902 * 109.46834 * 184.53185 * 4 3 2 6 6 C 1.46899 * 111.00132 * 66.87115 * 5 4 3 7 7 C 1.50696 * 109.47255 * 70.92860 * 6 5 4 8 8 H 1.08007 * 119.99673 * 5.06448 * 7 6 5 9 9 C 1.37876 * 120.00466 * 185.06620 * 7 6 5 10 10 N 1.31516 * 119.99846 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00081 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47078 * 60.00433 * 11 9 7 13 13 H 1.48504 * 109.47155 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47412 * 300.00071 * 11 9 7 15 15 C 1.46905 * 111.00128 * 302.91697 * 5 4 3 16 16 C 1.53001 * 109.47365 * 286.57243 * 15 5 4 17 17 C 1.54339 * 110.82233 * 186.56179 * 16 15 5 18 18 C 1.51372 * 105.25737 * 215.37753 * 17 16 15 19 19 C 1.38301 * 130.55702 * 197.16098 * 18 17 16 20 20 C 1.38095 * 120.28708 * 180.02562 * 19 18 17 21 21 C 1.38260 * 119.93265 * 0.02571 * 20 19 18 22 22 C 1.38108 * 119.93390 * 359.97438 * 21 20 19 23 23 C 1.38456 * 109.62388 * 17.23156 * 18 17 16 24 24 C 1.51369 * 109.79682 * 359.96662 * 23 18 17 25 25 H 1.08998 * 109.47340 * 106.81080 * 3 2 1 26 26 H 1.08997 * 109.46844 * 346.81001 * 3 2 1 27 27 H 1.08999 * 109.46839 * 64.53890 * 4 3 2 28 28 H 1.08993 * 109.47070 * 304.53298 * 4 3 2 29 29 H 1.08999 * 109.47584 * 190.93401 * 6 5 4 30 30 H 1.09004 * 109.46843 * 310.92935 * 6 5 4 31 31 H 0.96995 * 120.00412 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.46818 * 166.57172 * 15 5 4 33 33 H 1.09001 * 109.46969 * 46.57247 * 15 5 4 34 34 H 1.09001 * 110.87811 * 310.08511 * 16 15 5 35 35 H 1.08992 * 110.30504 * 334.35604 * 17 16 15 36 36 H 1.09007 * 110.29935 * 96.41028 * 17 16 15 37 37 H 1.08008 * 119.82106 * 0.05627 * 19 18 17 38 38 H 1.07998 * 120.03591 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.03176 * 180.02562 * 21 20 19 40 40 H 1.07996 * 119.88906 * 180.02562 * 22 21 20 41 41 H 1.09000 * 110.30223 * 223.90461 * 24 23 18 42 42 H 1.09002 * 110.38290 * 101.79610 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9882 1.0517 5 7 4.5824 1.0696 0.9779 6 6 5.0126 1.6799 -0.2871 7 6 4.6774 3.1491 -0.2757 8 1 4.2684 3.6027 0.6151 9 6 4.8929 3.9142 -1.4023 10 7 5.3904 3.3618 -2.4871 11 14 4.4767 5.7352 -1.3882 12 1 5.2712 6.4164 -0.3347 13 1 4.7997 6.3270 -2.7114 14 1 3.0290 5.9100 -1.1073 15 6 5.1930 -0.2542 1.1582 16 6 5.0882 -0.6685 2.6274 17 6 5.8627 -1.9784 2.8846 18 6 5.0517 -2.7233 3.9233 19 6 5.3997 -3.7749 4.7513 20 6 4.4771 -4.3012 5.6339 21 6 3.1994 -3.7760 5.6909 22 6 2.8485 -2.7258 4.8654 23 6 3.7723 -2.1971 3.9793 24 6 3.6396 -1.0647 2.9836 25 1 2.9712 0.2980 -0.9837 26 1 2.9717 -0.9997 0.2345 27 1 2.8221 0.6468 2.0439 28 1 2.6889 1.9725 0.8636 29 1 6.0889 1.5537 -0.4039 30 1 4.4979 1.1963 -1.1174 31 1 5.5416 3.8999 -3.2798 32 1 6.2424 -0.2131 0.8663 33 1 4.6714 -0.9826 0.5373 34 1 5.4443 0.1273 3.2817 35 1 5.9316 -2.5635 1.9676 36 1 6.8592 -1.7595 3.2686 37 1 6.3977 -4.1856 4.7074 38 1 4.7531 -5.1227 6.2784 39 1 2.4768 -4.1860 6.3807 40 1 1.8504 -2.3159 4.9108 41 1 3.1175 -0.2220 3.4367 42 1 3.1099 -1.4025 2.0929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564536488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:05 Heat of formation + Delta-G solvation = 52.967179 kcal Electronic energy + Delta-G solvation = -21822.717581 eV Core-core repulsion = 18767.344642 eV Total energy + Delta-G solvation = -3055.372939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28181 -38.15299 -36.18872 -35.19318 -32.67681 -31.48596 -30.75495 -29.60088 -27.35961 -26.79251 -25.12956 -23.44956 -21.85686 -20.93756 -20.35725 -19.65336 -17.47961 -16.41942 -16.33386 -15.79435 -15.46703 -14.88022 -14.71947 -14.51376 -13.99383 -13.76665 -13.67289 -13.22633 -12.92022 -12.77681 -12.65343 -12.49176 -12.14316 -12.02543 -11.77761 -11.52064 -11.30035 -11.28481 -11.06696 -10.89902 -10.80937 -10.64648 -10.49482 -10.36966 -10.14776 -9.75416 -9.29820 -8.85430 -8.48936 -8.47829 -7.39240 -6.08121 -4.09495 1.32222 1.35063 3.06680 3.08979 3.31647 3.36181 3.39035 3.71802 4.25589 4.36988 4.42745 4.63426 4.81881 4.94694 4.97610 5.08119 5.22280 5.27664 5.33632 5.35423 5.48188 5.53798 5.64197 5.65795 5.71594 5.86678 5.88146 5.89352 6.01831 6.06741 6.14199 6.22109 6.32661 6.40026 6.44732 6.56362 6.63169 6.68170 6.97499 7.15084 7.22590 7.74508 7.84614 7.99136 8.06689 8.44080 8.98490 9.55629 11.02049 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003942 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.448196 B = 7100.872760 C = 7865.289192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.223 3.777 3 C -0.077 4.077 4 C 0.058 3.942 5 N -0.525 5.525 6 C 0.186 3.814 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.054 3.946 16 C -0.079 4.079 17 C -0.079 4.079 18 C -0.093 4.093 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.111 4.111 23 C -0.092 4.092 24 C -0.084 4.084 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.004 0.996 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 -13.954 12.256 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.072 4.072 5 N -0.247 5.247 6 C 0.061 3.939 7 C -0.547 4.547 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.075 4.075 16 C -0.098 4.098 17 C -0.117 4.117 18 C -0.093 4.093 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.129 4.129 23 C -0.092 4.092 24 C -0.120 4.120 25 H 0.137 0.863 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.985 -13.582 12.435 18.441 hybrid contribution -0.029 0.393 -0.786 0.879 sum -1.014 -13.189 11.649 17.626 Atomic orbital electron populations 1.81142 1.13165 1.09664 1.09719 1.29252 0.95259 0.92444 0.92482 1.20318 0.81673 1.03792 1.06106 1.22389 0.89681 0.98910 0.96222 1.62329 1.04736 1.18295 1.39315 1.19872 0.95989 0.94478 0.83519 1.21110 1.42188 0.93277 0.98151 0.91814 1.24957 0.95350 0.98656 0.95454 1.69924 1.44874 1.36233 1.02752 0.86608 0.78897 0.85141 0.77079 1.20145 1.21427 1.20288 1.22209 1.00299 0.91307 0.93641 1.21907 0.93599 0.96168 0.98082 1.21125 0.98474 0.95333 0.96747 1.20702 0.95649 0.95933 0.97006 1.20569 0.99561 0.96477 0.96260 1.20983 0.93784 1.00328 0.99326 1.21000 0.96607 0.97054 0.99615 1.20668 0.99164 0.96947 0.96095 1.20876 0.94066 0.97569 0.96700 1.21480 0.98433 0.95189 0.96937 0.86340 0.88096 0.90550 0.89189 0.95278 0.97853 0.92831 0.90689 0.94713 0.89068 0.90132 0.90666 0.86489 0.86263 0.86265 0.86453 0.90068 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.25 18.54 42.15 0.78 -7.46 16 2 C 0.22 3.54 15.43 -20.76 -0.32 3.22 16 3 C -0.08 -1.10 4.61 -29.52 -0.14 -1.24 16 4 C 0.06 0.92 4.61 -3.82 -0.02 0.90 16 5 N -0.52 -9.25 4.61 -236.07 -1.09 -10.34 16 6 C 0.19 4.18 4.62 -4.98 -0.02 4.16 16 7 C -0.51 -13.06 8.40 -34.44 -0.29 -13.35 16 8 H 0.06 1.64 7.65 -52.48 -0.40 1.24 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -25.12 13.29 55.43 0.74 -24.39 16 11 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.05 0.76 4.37 -3.82 -0.02 0.74 16 16 C -0.08 -0.96 3.25 -89.21 -0.29 -1.25 16 17 C -0.08 -0.86 6.31 -26.85 -0.17 -1.03 16 18 C -0.09 -1.08 6.15 -104.19 -0.64 -1.72 16 19 C -0.11 -1.16 10.03 -39.61 -0.40 -1.56 16 20 C -0.13 -1.24 10.05 -39.63 -0.40 -1.63 16 21 C -0.12 -1.26 10.05 -39.62 -0.40 -1.66 16 22 C -0.11 -1.24 10.04 -39.53 -0.40 -1.64 16 23 C -0.09 -1.11 6.14 -104.12 -0.64 -1.75 16 24 C -0.08 -0.99 4.40 -26.85 -0.12 -1.11 16 25 H 0.12 1.89 6.21 -51.93 -0.32 1.57 16 26 H 0.10 1.20 4.91 -51.93 -0.25 0.94 16 27 H 0.08 1.06 4.46 -51.93 -0.23 0.82 16 28 H 0.09 1.65 7.17 -51.93 -0.37 1.28 16 29 H 0.03 0.71 7.73 -51.93 -0.40 0.31 16 30 H 0.00 0.09 6.03 -51.93 -0.31 -0.23 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.07 1.09 7.71 -51.93 -0.40 0.69 16 33 H 0.03 0.45 5.51 -51.93 -0.29 0.16 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.08 0.97 6.70 -51.93 -0.35 0.62 16 42 H 0.08 0.93 5.42 -51.93 -0.28 0.65 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -28.91 335.41 -9.58 -38.49 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.69 Total: 0.29 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -4.35 Total: -17.48 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.43 Total: -42.19 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.91 -9.58 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564536488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.453 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds