Wall clock time and date at job start Tue Mar 31 2020 06:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46728 * 226.81009 * 3 2 1 5 5 N 1.46902 * 109.46834 * 184.53185 * 4 3 2 6 6 C 1.46899 * 111.00132 * 66.87115 * 5 4 3 7 7 C 1.50696 * 109.47255 * 70.92860 * 6 5 4 8 8 H 1.08007 * 119.99673 * 5.06448 * 7 6 5 9 9 C 1.37876 * 120.00466 * 185.06620 * 7 6 5 10 10 N 1.31516 * 119.99846 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00081 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47078 * 60.00433 * 11 9 7 13 13 H 1.48504 * 109.47155 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47412 * 300.00071 * 11 9 7 15 15 C 1.46905 * 111.00128 * 302.91697 * 5 4 3 16 16 C 1.53001 * 109.47365 * 286.57243 * 15 5 4 17 17 C 1.54339 * 110.82233 * 186.56179 * 16 15 5 18 18 C 1.51372 * 105.25737 * 215.37753 * 17 16 15 19 19 C 1.38301 * 130.55702 * 197.16098 * 18 17 16 20 20 C 1.38095 * 120.28708 * 180.02562 * 19 18 17 21 21 C 1.38260 * 119.93265 * 0.02571 * 20 19 18 22 22 C 1.38108 * 119.93390 * 359.97438 * 21 20 19 23 23 C 1.38456 * 109.62388 * 17.23156 * 18 17 16 24 24 C 1.51369 * 109.79682 * 359.96662 * 23 18 17 25 25 H 1.08998 * 109.47340 * 106.81080 * 3 2 1 26 26 H 1.08997 * 109.46844 * 346.81001 * 3 2 1 27 27 H 1.08999 * 109.46839 * 64.53890 * 4 3 2 28 28 H 1.08993 * 109.47070 * 304.53298 * 4 3 2 29 29 H 1.08999 * 109.47584 * 190.93401 * 6 5 4 30 30 H 1.09004 * 109.46843 * 310.92935 * 6 5 4 31 31 H 0.96995 * 120.00412 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.46818 * 166.57172 * 15 5 4 33 33 H 1.09001 * 109.46969 * 46.57247 * 15 5 4 34 34 H 1.09001 * 110.87811 * 310.08511 * 16 15 5 35 35 H 1.08992 * 110.30504 * 334.35604 * 17 16 15 36 36 H 1.09007 * 110.29935 * 96.41028 * 17 16 15 37 37 H 1.08008 * 119.82106 * 0.05627 * 19 18 17 38 38 H 1.07998 * 120.03591 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.03176 * 180.02562 * 21 20 19 40 40 H 1.07996 * 119.88906 * 180.02562 * 22 21 20 41 41 H 1.09000 * 110.30223 * 223.90461 * 24 23 18 42 42 H 1.09002 * 110.38290 * 101.79610 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9882 1.0517 5 7 4.5824 1.0696 0.9779 6 6 5.0126 1.6799 -0.2871 7 6 4.6774 3.1491 -0.2757 8 1 4.2684 3.6027 0.6151 9 6 4.8929 3.9142 -1.4023 10 7 5.3904 3.3618 -2.4871 11 14 4.4767 5.7352 -1.3882 12 1 5.2712 6.4164 -0.3347 13 1 4.7997 6.3270 -2.7114 14 1 3.0290 5.9100 -1.1073 15 6 5.1930 -0.2542 1.1582 16 6 5.0882 -0.6685 2.6274 17 6 5.8627 -1.9784 2.8846 18 6 5.0517 -2.7233 3.9233 19 6 5.3997 -3.7749 4.7513 20 6 4.4771 -4.3012 5.6339 21 6 3.1994 -3.7760 5.6909 22 6 2.8485 -2.7258 4.8654 23 6 3.7723 -2.1971 3.9793 24 6 3.6396 -1.0647 2.9836 25 1 2.9712 0.2980 -0.9837 26 1 2.9717 -0.9997 0.2345 27 1 2.8221 0.6468 2.0439 28 1 2.6889 1.9725 0.8636 29 1 6.0889 1.5537 -0.4039 30 1 4.4979 1.1963 -1.1174 31 1 5.5416 3.8999 -3.2798 32 1 6.2424 -0.2131 0.8663 33 1 4.6714 -0.9826 0.5373 34 1 5.4443 0.1273 3.2817 35 1 5.9316 -2.5635 1.9676 36 1 6.8592 -1.7595 3.2686 37 1 6.3977 -4.1856 4.7074 38 1 4.7531 -5.1227 6.2784 39 1 2.4768 -4.1860 6.3807 40 1 1.8504 -2.3159 4.9108 41 1 3.1175 -0.2220 3.4367 42 1 3.1099 -1.4025 2.0929 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564536488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:05 Heat of formation + Delta-G solvation = 38.466223 kcal Electronic energy + Delta-G solvation = -21823.346390 eV Core-core repulsion = 18767.344642 eV Total energy + Delta-G solvation = -3056.001748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18210 -39.37997 -37.46957 -36.31288 -34.59045 -32.35354 -31.93900 -30.85169 -28.49197 -28.11321 -26.32814 -25.04631 -22.88966 -21.74718 -21.51191 -20.87758 -18.80384 -18.24428 -17.22944 -16.89135 -16.74759 -16.29153 -15.84765 -15.64639 -15.22258 -15.05388 -14.93965 -14.27619 -14.10561 -13.84572 -13.74035 -13.69768 -13.51592 -13.17241 -13.11562 -12.89186 -12.86690 -12.68313 -12.38739 -12.26558 -12.04602 -11.90389 -11.68415 -11.55109 -11.46353 -11.22318 -11.03188 -10.50593 -9.64482 -9.30665 -8.86158 -8.11685 -6.18404 0.52685 0.55884 1.45828 1.46043 1.53404 1.75220 1.78463 2.45497 2.92517 2.98611 3.21828 3.37327 3.65965 3.74809 4.06932 4.15147 4.23197 4.25188 4.26635 4.28427 4.47455 4.52140 4.63105 4.74869 4.81330 4.84400 4.89361 4.94928 4.96915 5.06966 5.11780 5.19561 5.33017 5.37741 5.43766 5.47446 5.55803 5.64388 5.68485 5.76913 5.85168 6.19311 6.20700 6.41080 6.58289 6.75809 6.98637 7.50557 8.97257 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003942 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.448196 B = 7100.872760 C = 7865.289192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.243 3.757 3 C -0.065 4.065 4 C 0.062 3.938 5 N -0.531 5.531 6 C 0.199 3.801 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.951 3.049 12 H -0.271 1.271 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.056 3.944 16 C -0.071 4.071 17 C -0.073 4.073 18 C -0.107 4.107 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.081 4.081 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.007 0.993 30 H -0.007 1.007 31 H 0.261 0.739 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -15.240 13.647 20.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.074 4.074 3 C -0.107 4.107 4 C -0.068 4.068 5 N -0.253 5.253 6 C 0.073 3.927 7 C -0.554 4.554 8 H 0.077 0.923 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.777 3.223 12 H -0.196 1.196 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.072 4.072 16 C -0.090 4.090 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.111 4.111 24 C -0.117 4.117 25 H 0.123 0.877 26 H 0.151 0.849 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.011 0.989 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.152 0.848 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.046 -14.876 13.848 20.351 hybrid contribution 0.004 0.727 -1.132 1.345 sum -1.041 -14.149 12.716 19.052 Atomic orbital electron populations 1.81163 1.14192 1.10938 1.10785 1.29370 0.95256 0.91321 0.91448 1.20263 0.80626 1.04982 1.04793 1.22340 0.88476 0.98024 0.97987 1.62189 1.05945 1.20667 1.36526 1.19530 0.94406 0.93349 0.85410 1.21476 1.41138 0.95084 0.97723 0.92286 1.25672 0.95571 1.02383 0.95363 1.70026 1.46318 1.37501 1.03264 0.85718 0.78699 0.80867 0.77020 1.19618 1.21353 1.19944 1.22261 0.99858 0.89719 0.95353 1.21745 0.94490 0.96646 0.96156 1.21062 0.98477 0.94362 0.97176 1.20847 0.95607 0.96616 0.97614 1.20861 1.00652 0.96185 0.96004 1.21342 0.93485 1.00645 0.99151 1.21323 0.97346 0.96576 0.99531 1.20893 0.99528 0.97543 0.96352 1.20952 0.94733 0.98027 0.97409 1.21411 0.97853 0.95250 0.97229 0.87709 0.84941 0.88109 0.91973 0.97523 0.98895 0.92972 0.91268 0.93016 0.90319 0.89268 0.89924 0.84778 0.83821 0.84172 0.85790 0.90494 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.32 18.54 20.01 0.37 -16.95 16 2 C 0.24 7.46 15.43 89.44 1.38 8.84 16 3 C -0.07 -1.78 4.61 28.79 0.13 -1.65 16 4 C 0.06 1.91 4.61 86.30 0.40 2.31 16 5 N -0.53 -18.57 4.61 -900.78 -4.15 -22.73 16 6 C 0.20 9.06 4.62 85.56 0.40 9.46 16 7 C -0.52 -26.79 8.40 25.60 0.22 -26.57 16 8 H 0.06 3.06 7.65 -2.91 -0.02 3.04 16 9 C 0.01 0.45 5.46 84.65 0.46 0.91 16 10 N -0.93 -52.74 13.29 21.45 0.28 -52.46 16 11 Si 0.95 42.99 29.54 68.60 2.03 45.01 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 15 C 0.06 1.51 4.37 86.30 0.38 1.89 16 16 C -0.07 -1.65 3.25 -9.88 -0.03 -1.68 16 17 C -0.07 -1.45 6.31 30.52 0.19 -1.26 16 18 C -0.11 -2.27 6.15 -19.58 -0.12 -2.39 16 19 C -0.12 -2.21 10.03 22.25 0.22 -1.99 16 20 C -0.13 -2.16 10.05 22.24 0.22 -1.94 16 21 C -0.13 -2.30 10.05 22.24 0.22 -2.08 16 22 C -0.13 -2.59 10.04 22.30 0.22 -2.36 16 23 C -0.11 -2.49 6.14 -19.54 -0.12 -2.61 16 24 C -0.08 -1.78 4.40 30.52 0.13 -1.65 16 25 H 0.11 3.29 6.21 -2.39 -0.01 3.28 16 26 H 0.13 2.81 4.91 -2.39 -0.01 2.80 16 27 H 0.10 2.66 4.46 -2.39 -0.01 2.65 16 28 H 0.06 2.29 7.17 -2.39 -0.02 2.27 16 29 H 0.01 0.33 7.73 -2.39 -0.02 0.31 16 30 H -0.01 -0.31 6.03 -2.39 -0.01 -0.33 16 31 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.07 1.97 7.71 -2.39 -0.02 1.95 16 33 H 0.05 1.23 5.51 -2.39 -0.01 1.22 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 1.61 7.89 -2.39 -0.02 1.59 16 36 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.08 1.74 6.70 -2.39 -0.02 1.72 16 42 H 0.08 1.76 5.42 -2.39 -0.01 1.75 16 Total: -1.00 -61.87 335.41 3.87 -58.01 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.03 Total: 11.89 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.31 Total: -22.78 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -3.50 Total: -92.14 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -61.87 3.87 -58.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564536488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.472 kcal (2) G-P(sol) polarization free energy of solvation -61.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds