Wall clock time and date at job start Tue Mar 31 2020 05:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42098 * 109.46864 * 2 1 4 4 C 1.81399 * 103.00012 * 243.60873 * 2 1 3 5 5 C 1.53001 * 112.84963 * 303.10365 * 4 2 1 6 6 N 1.46910 * 109.46979 * 283.10547 * 5 4 2 7 7 C 1.46898 * 111.00044 * 173.92212 * 6 5 4 8 8 C 1.52996 * 109.47438 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47106 * 305.00590 * 8 7 6 10 10 C 1.47201 * 109.46550 * 65.00105 * 8 7 6 11 11 N 5.30132 * 98.15075 * 152.97274 * 2 1 3 12 12 C 1.52996 * 109.47507 * 185.00287 * 8 7 6 13 13 C 1.50697 * 109.47374 * 175.00627 * 12 8 7 14 14 H 1.07998 * 119.99800 * 359.97438 * 13 12 8 15 15 C 1.37879 * 120.00052 * 180.02562 * 13 12 8 16 16 N 1.31506 * 119.99953 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99638 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47125 * 60.00187 * 17 15 13 19 19 H 1.48497 * 109.46900 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47431 * 299.99849 * 17 15 13 21 21 C 1.53780 * 113.61601 * 74.30093 * 4 2 1 22 22 C 1.53951 * 87.01893 * 89.22971 * 21 4 2 23 23 C 1.53775 * 87.11449 * 25.36350 * 22 21 4 24 24 H 1.09004 * 109.47427 * 173.02672 * 1 2 3 25 25 H 1.09007 * 109.47076 * 293.02533 * 1 2 3 26 26 H 1.08996 * 109.47436 * 53.02605 * 1 2 3 27 27 H 1.08989 * 109.47518 * 163.10714 * 5 4 2 28 28 H 1.09000 * 109.47197 * 43.10099 * 5 4 2 29 29 H 1.00895 * 110.99405 * 297.87712 * 6 5 4 30 30 H 1.09000 * 109.47375 * 300.00654 * 7 6 5 31 31 H 1.09005 * 109.46576 * 59.99858 * 7 6 5 32 32 H 1.09007 * 109.46843 * 295.00449 * 12 8 7 33 33 H 1.08994 * 109.47063 * 54.99903 * 12 8 7 34 34 H 0.96999 * 120.00154 * 180.02562 * 16 15 13 35 35 H 1.09000 * 113.61176 * 203.75017 * 21 4 2 36 36 H 1.09004 * 113.60748 * 334.64854 * 21 4 2 37 37 H 1.09005 * 113.53812 * 270.80853 * 22 21 4 38 38 H 1.09000 * 113.74246 * 139.95067 * 22 21 4 39 39 H 1.08997 * 113.61367 * 220.09192 * 23 22 21 40 40 H 1.09000 * 113.69249 * 89.19720 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2220 -0.7856 -1.5833 5 6 1.6054 -2.1780 -1.7320 6 7 2.3791 -3.1434 -0.9398 7 6 1.7341 -4.4632 -0.9419 8 6 2.5673 -5.4394 -0.1092 9 1 3.5907 -5.4552 -0.4842 10 6 2.5670 -5.0081 1.2982 11 7 2.5656 -4.6747 2.3847 12 6 1.9645 -6.8418 -0.2130 13 6 2.8525 -7.8248 0.5055 14 1 3.7566 -7.4834 0.9876 15 6 2.5112 -9.1600 0.5465 16 7 1.4105 -9.5757 -0.0409 17 14 3.6123 -10.3785 1.4366 18 1 3.7236 -9.9925 2.8662 19 1 3.0272 -11.7396 1.3359 20 1 4.9612 -10.3719 0.8157 21 6 1.9891 0.1245 -2.8007 22 6 3.4368 0.6128 -2.6115 23 6 3.7199 -0.7353 -1.9280 24 1 -0.3634 -1.0201 -0.1248 25 1 -0.3633 0.4020 0.9459 26 1 -0.3634 0.6181 -0.8210 27 1 1.6222 -2.4726 -2.7812 28 1 0.5752 -2.1590 -1.3764 29 1 3.3296 -3.2049 -1.2727 30 1 0.7353 -4.3801 -0.5135 31 1 1.6608 -4.8300 -1.9658 32 1 0.9743 -6.8462 0.2427 33 1 1.8828 -7.1254 -1.2622 34 1 1.1702 -10.5150 -0.0117 35 1 1.8307 -0.4220 -3.7304 36 1 1.2405 0.8983 -2.6305 37 1 3.5236 1.4686 -1.9419 38 1 3.9793 0.7507 -3.5468 39 1 4.3665 -0.6546 -1.0543 40 1 4.0358 -1.5181 -2.6175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564861434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:47 Heat of formation + Delta-G solvation = 0.074536 kcal Electronic energy + Delta-G solvation = -20158.269524 eV Core-core repulsion = 17100.213845 eV Total energy + Delta-G solvation = -3058.055680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.35261 -37.15133 -35.81760 -34.86486 -33.46705 -31.61899 -29.35396 -28.06351 -26.13879 -25.67075 -23.02205 -22.26509 -21.68759 -20.24225 -17.38370 -17.11417 -16.42919 -16.29098 -15.50918 -15.06385 -14.93949 -14.73435 -14.33194 -14.02244 -13.83372 -13.50285 -12.90657 -12.78494 -12.67222 -12.53224 -12.25476 -12.13974 -11.94368 -11.91531 -11.63116 -11.45262 -11.22725 -11.05379 -10.77420 -10.65217 -10.57607 -10.44515 -10.24528 -9.96808 -9.54866 -9.25282 -8.49129 -8.44137 -8.15401 -6.11195 -4.14378 1.44414 2.51595 3.30374 3.34980 3.38557 3.65682 3.72889 3.83080 3.92594 4.33690 4.38889 4.48193 4.58236 4.73529 4.90946 4.97016 5.09698 5.21920 5.27131 5.28164 5.40659 5.43081 5.54324 5.57924 5.64872 5.72096 5.72489 5.84349 5.95077 6.00022 6.13485 6.35143 6.47432 6.99737 7.39252 7.42232 7.51157 7.83985 8.21420 8.58695 8.90446 9.51391 10.99632 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.003414 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.751688 B = 8199.733112 C = 8416.765197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.490 4.490 2 S 1.283 4.717 3 O -0.855 6.855 4 C -0.398 4.398 5 C 0.098 3.902 6 N -0.691 5.691 7 C 0.065 3.935 8 C 0.009 3.991 9 H 0.099 0.901 10 C 0.254 3.746 11 N -0.476 5.476 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.116 4.116 22 C -0.155 4.155 23 C -0.091 4.091 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.345 0.655 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.026 0.974 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 15.939 -6.920 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 1.480 4.520 3 O -0.851 6.851 4 C -0.496 4.496 5 C -0.033 4.033 6 N -0.323 5.323 7 C -0.065 4.065 8 C -0.013 4.013 9 H 0.117 0.883 10 C -0.063 4.063 11 N -0.153 5.153 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.155 4.155 22 C -0.193 4.193 23 C -0.130 4.130 24 H 0.133 0.867 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.090 16.834 -4.027 17.309 hybrid contribution -0.243 -0.231 -2.662 2.683 sum -0.153 16.604 -6.689 17.901 Atomic orbital electron populations 1.27661 1.21980 1.08111 1.06991 1.71309 0.85994 0.97057 0.97614 1.93006 1.73633 1.37555 1.80881 1.29118 1.03492 1.03563 1.13398 1.21492 0.97308 0.88341 0.96125 1.60459 1.06108 1.08524 1.57208 1.22089 0.98586 0.86863 0.98921 1.19198 1.01848 0.97531 0.82690 0.88272 1.28843 0.92082 0.90657 0.94709 1.81019 1.09767 1.11865 1.12647 1.19162 0.96664 0.86281 0.98631 1.21110 1.08249 0.92428 1.34728 0.92493 1.24942 0.95148 0.98497 0.95314 1.69919 1.23609 1.15995 1.43563 0.86664 0.80824 0.80183 0.80471 1.20175 1.21255 1.20082 1.22898 0.97758 0.97584 0.97252 1.23107 0.96071 0.98461 1.01618 1.22417 0.92151 0.97671 1.00744 0.86669 0.87635 0.90356 0.94352 0.90501 0.83655 0.90230 0.93250 0.95522 0.94551 0.92751 0.89706 0.92288 0.88625 0.91284 0.90642 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -4.26 10.39 101.05 1.05 -3.21 16 2 S 1.28 12.89 13.27 -107.50 -1.43 11.46 16 3 O -0.86 -12.81 16.22 -35.23 -0.57 -13.39 16 4 C -0.40 -3.54 0.97 -89.81 -0.09 -3.63 16 5 C 0.10 0.83 5.20 -3.82 -0.02 0.81 16 6 N -0.69 -6.84 6.10 -113.78 -0.69 -7.53 16 7 C 0.07 0.79 5.03 -3.83 -0.02 0.77 16 8 C 0.01 0.15 2.35 -93.41 -0.22 -0.07 16 9 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 10 C 0.25 4.74 13.67 -20.74 -0.28 4.45 16 11 N -0.48 -9.76 18.54 42.17 0.78 -8.98 16 12 C 0.03 0.67 4.42 -27.89 -0.12 0.55 16 13 C -0.53 -13.40 8.60 -34.44 -0.30 -13.70 16 14 H 0.06 1.44 7.59 -52.49 -0.40 1.04 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 17 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.12 -1.07 7.19 -25.83 -0.19 -1.26 16 22 C -0.16 -1.52 7.67 -25.83 -0.20 -1.72 16 23 C -0.09 -0.80 6.33 -25.92 -0.16 -0.97 16 24 H 0.11 0.84 6.66 -51.92 -0.35 0.50 16 25 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.32 7.83 -51.94 -0.41 -0.09 16 28 H 0.08 0.61 6.22 -51.93 -0.32 0.28 16 29 H 0.34 3.07 7.74 -39.29 -0.30 2.77 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 36 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.10 1.16 6.69 -51.93 -0.35 0.81 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -32.09 343.71 -7.96 -40.05 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.30 Total: -2.01 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.65 Total: -16.39 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.82 Total: -40.59 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.57 Total: -13.39 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 12.89 SS G_CDS: -1.43 Total: 11.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.09 -7.96 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564861434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.122 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds