Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42098 * 109.46864 * 2 1 4 4 C 1.81399 * 103.00012 * 243.60873 * 2 1 3 5 5 C 1.53001 * 112.84963 * 303.10365 * 4 2 1 6 6 N 1.46910 * 109.46979 * 283.10547 * 5 4 2 7 7 C 1.46898 * 111.00044 * 173.92212 * 6 5 4 8 8 C 1.52996 * 109.47438 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47106 * 305.00590 * 8 7 6 10 10 C 1.47201 * 109.46550 * 65.00105 * 8 7 6 11 11 N 5.30132 * 98.15075 * 152.97274 * 2 1 3 12 12 C 1.52996 * 109.47507 * 185.00287 * 8 7 6 13 13 C 1.50697 * 109.47374 * 175.00627 * 12 8 7 14 14 H 1.07998 * 119.99800 * 359.97438 * 13 12 8 15 15 C 1.37879 * 120.00052 * 180.02562 * 13 12 8 16 16 N 1.31506 * 119.99953 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99638 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47125 * 60.00187 * 17 15 13 19 19 H 1.48497 * 109.46900 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47431 * 299.99849 * 17 15 13 21 21 C 1.53780 * 113.61601 * 74.30093 * 4 2 1 22 22 C 1.53951 * 87.01893 * 89.22971 * 21 4 2 23 23 C 1.53775 * 87.11449 * 25.36350 * 22 21 4 24 24 H 1.09004 * 109.47427 * 173.02672 * 1 2 3 25 25 H 1.09007 * 109.47076 * 293.02533 * 1 2 3 26 26 H 1.08996 * 109.47436 * 53.02605 * 1 2 3 27 27 H 1.08989 * 109.47518 * 163.10714 * 5 4 2 28 28 H 1.09000 * 109.47197 * 43.10099 * 5 4 2 29 29 H 1.00895 * 110.99405 * 297.87712 * 6 5 4 30 30 H 1.09000 * 109.47375 * 300.00654 * 7 6 5 31 31 H 1.09005 * 109.46576 * 59.99858 * 7 6 5 32 32 H 1.09007 * 109.46843 * 295.00449 * 12 8 7 33 33 H 1.08994 * 109.47063 * 54.99903 * 12 8 7 34 34 H 0.96999 * 120.00154 * 180.02562 * 16 15 13 35 35 H 1.09000 * 113.61176 * 203.75017 * 21 4 2 36 36 H 1.09004 * 113.60748 * 334.64854 * 21 4 2 37 37 H 1.09005 * 113.53812 * 270.80853 * 22 21 4 38 38 H 1.09000 * 113.74246 * 139.95067 * 22 21 4 39 39 H 1.08997 * 113.61367 * 220.09192 * 23 22 21 40 40 H 1.09000 * 113.69249 * 89.19720 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2220 -0.7856 -1.5833 5 6 1.6054 -2.1780 -1.7320 6 7 2.3791 -3.1434 -0.9398 7 6 1.7341 -4.4632 -0.9419 8 6 2.5673 -5.4394 -0.1092 9 1 3.5907 -5.4552 -0.4842 10 6 2.5670 -5.0081 1.2982 11 7 2.5656 -4.6747 2.3847 12 6 1.9645 -6.8418 -0.2130 13 6 2.8525 -7.8248 0.5055 14 1 3.7566 -7.4834 0.9876 15 6 2.5112 -9.1600 0.5465 16 7 1.4105 -9.5757 -0.0409 17 14 3.6123 -10.3785 1.4366 18 1 3.7236 -9.9925 2.8662 19 1 3.0272 -11.7396 1.3359 20 1 4.9612 -10.3719 0.8157 21 6 1.9891 0.1245 -2.8007 22 6 3.4368 0.6128 -2.6115 23 6 3.7199 -0.7353 -1.9280 24 1 -0.3634 -1.0201 -0.1248 25 1 -0.3633 0.4020 0.9459 26 1 -0.3634 0.6181 -0.8210 27 1 1.6222 -2.4726 -2.7812 28 1 0.5752 -2.1590 -1.3764 29 1 3.3296 -3.2049 -1.2727 30 1 0.7353 -4.3801 -0.5135 31 1 1.6608 -4.8300 -1.9658 32 1 0.9743 -6.8462 0.2427 33 1 1.8828 -7.1254 -1.2622 34 1 1.1702 -10.5150 -0.0117 35 1 1.8307 -0.4220 -3.7304 36 1 1.2405 0.8983 -2.6305 37 1 3.5236 1.4686 -1.9419 38 1 3.9793 0.7507 -3.5468 39 1 4.3665 -0.6546 -1.0543 40 1 4.0358 -1.5181 -2.6175 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564861434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = -21.632919 kcal Electronic energy + Delta-G solvation = -20159.210830 eV Core-core repulsion = 17100.213845 eV Total energy + Delta-G solvation = -3058.996985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10515 -38.41373 -36.82517 -36.05448 -35.18307 -33.13960 -30.17362 -29.18147 -27.32322 -26.59530 -24.27324 -23.28130 -23.02436 -20.99881 -18.60272 -18.23616 -18.02128 -17.15881 -16.56822 -16.33131 -15.85455 -15.80115 -15.41385 -15.07752 -14.76989 -14.49864 -14.33119 -14.01967 -13.65959 -13.53718 -13.37761 -13.21833 -13.17728 -12.93543 -12.84739 -12.79483 -12.54272 -12.35879 -12.31490 -12.16964 -11.75775 -11.49499 -11.30043 -11.20938 -10.93102 -10.78047 -10.47235 -9.25546 -8.95536 -8.12484 -6.19280 0.66620 1.46136 1.48254 1.54308 1.76664 2.27585 2.33828 2.47751 2.85517 3.11763 3.24060 3.51745 3.59950 3.71041 3.85350 4.01044 4.25541 4.35429 4.43619 4.46154 4.61007 4.66346 4.70140 4.77016 4.90946 4.92533 4.97050 5.01496 5.02633 5.14910 5.21716 5.24709 5.37783 5.58269 5.75132 5.89361 6.14228 6.31647 6.69072 6.94346 7.12860 7.49204 8.98020 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.003414 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.751688 B = 8199.733112 C = 8416.765197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.484 4.484 2 S 1.284 4.716 3 O -0.912 6.912 4 C -0.387 4.387 5 C 0.101 3.899 6 N -0.695 5.695 7 C 0.077 3.923 8 C 0.020 3.980 9 H 0.120 0.880 10 C 0.265 3.735 11 N -0.512 5.512 12 C 0.036 3.964 13 C -0.536 4.536 14 H 0.055 0.945 15 C 0.012 3.988 16 N -0.924 5.924 17 Si 0.943 3.057 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.113 4.113 22 C -0.162 4.162 23 C -0.089 4.089 24 H 0.134 0.866 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.353 0.647 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.002 0.998 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 15.585 -8.103 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 1.484 4.516 3 O -0.907 6.907 4 C -0.486 4.486 5 C -0.029 4.029 6 N -0.327 5.327 7 C -0.053 4.053 8 C -0.002 4.002 9 H 0.138 0.862 10 C -0.051 4.051 11 N -0.189 5.189 12 C -0.003 4.003 13 C -0.574 4.574 14 H 0.074 0.926 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.769 3.231 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.152 4.152 22 C -0.200 4.200 23 C -0.127 4.127 24 H 0.153 0.847 25 H 0.128 0.872 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.173 0.827 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.021 0.979 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.401 16.504 -5.200 17.309 hybrid contribution -0.361 -0.127 -2.322 2.354 sum 0.040 16.377 -7.523 18.022 Atomic orbital electron populations 1.27595 1.20100 1.09368 1.07247 1.70635 0.86804 0.95562 0.98562 1.92943 1.75509 1.39666 1.82629 1.28909 1.03881 1.03628 1.12164 1.21519 0.97413 0.87142 0.96819 1.60356 1.06700 1.07548 1.58109 1.21883 0.97666 0.86951 0.98775 1.19156 1.03381 0.95618 0.82080 0.86233 1.29318 0.90968 0.89796 0.95037 1.81030 1.11084 1.13069 1.13717 1.18998 0.95037 0.88743 0.97545 1.21587 1.08465 0.93246 1.34090 0.92649 1.25654 0.96313 1.00394 0.96286 1.70012 1.25076 1.16189 1.45188 0.85839 0.79870 0.78325 0.79074 1.20706 1.21164 1.18862 1.22927 0.96854 0.97374 0.98048 1.23066 0.97093 0.98128 1.01689 1.22486 0.91860 0.97459 1.00914 0.84722 0.87181 0.90621 0.92776 0.89553 0.82684 0.90255 0.91554 0.97944 0.94760 0.92903 0.87820 0.93474 0.91566 0.90110 0.91036 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.48 -7.69 10.39 113.37 1.18 -6.51 16 2 S 1.28 25.00 13.27 -56.49 -0.75 24.25 16 3 O -0.91 -28.12 16.22 -148.98 -2.42 -30.54 16 4 C -0.39 -6.05 0.97 -10.27 -0.01 -6.06 16 5 C 0.10 1.35 5.20 86.30 0.45 1.79 16 6 N -0.69 -11.36 6.10 -513.88 -3.14 -14.50 16 7 C 0.08 1.61 5.03 86.30 0.43 2.05 16 8 C 0.02 0.58 2.35 -12.60 -0.03 0.55 16 9 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 10 C 0.27 9.46 13.67 89.44 1.22 10.68 16 11 N -0.51 -20.47 18.54 20.01 0.37 -20.10 16 12 C 0.04 1.49 4.42 29.85 0.13 1.62 16 13 C -0.54 -26.73 8.60 25.60 0.22 -26.51 16 14 H 0.06 2.72 7.59 -2.91 -0.02 2.70 16 15 C 0.01 0.65 5.46 84.66 0.46 1.11 16 16 N -0.92 -51.30 13.29 21.45 0.28 -51.02 16 17 Si 0.94 41.96 29.54 68.60 2.03 43.98 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 C -0.11 -1.87 7.19 31.18 0.22 -1.64 16 22 C -0.16 -3.03 7.67 31.18 0.24 -2.79 16 23 C -0.09 -1.37 6.33 31.12 0.20 -1.18 16 24 H 0.13 1.60 6.66 -2.39 -0.02 1.58 16 25 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 0.63 7.83 -2.39 -0.02 0.61 16 28 H 0.09 1.02 6.22 -2.39 -0.01 1.01 16 29 H 0.35 4.94 7.74 -89.70 -0.69 4.24 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.10 1.34 7.89 -2.39 -0.02 1.32 16 36 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 37 H 0.07 1.66 6.69 -2.38 -0.02 1.64 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 40 H 0.11 1.27 7.89 -2.39 -0.02 1.25 16 Total: -1.00 -69.24 343.71 1.44 -67.80 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.34 Total: 7.00 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 4.72 Total: -26.88 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -2.48 Total: -85.61 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -2.42 Total: -30.54 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 25.00 SS G_CDS: -0.75 Total: 24.25 kcal Total: -69.24 1.44 -67.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564861434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.170 kcal (2) G-P(sol) polarization free energy of solvation -69.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds