Wall clock time and date at job start Tue Mar 31 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42098 * 109.47043 * 2 1 4 4 C 1.81399 * 103.00019 * 243.61004 * 2 1 3 5 5 C 1.52998 * 112.85123 * 303.10528 * 4 2 1 6 6 N 1.46904 * 109.46962 * 283.10211 * 5 4 2 7 7 C 1.46893 * 110.99967 * 173.92612 * 6 5 4 8 8 C 1.52998 * 109.47216 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46992 * 55.00233 * 8 7 6 10 10 C 1.47190 * 109.47479 * 294.99977 * 8 7 6 11 11 N 6.68148 * 117.34394 * 192.18230 * 2 1 3 12 12 C 1.53004 * 109.47093 * 174.99434 * 8 7 6 13 13 C 1.50708 * 109.46813 * 185.00168 * 12 8 7 14 14 H 1.08001 * 120.00242 * 359.97438 * 13 12 8 15 15 C 1.37875 * 119.99645 * 179.73256 * 13 12 8 16 16 N 1.31516 * 120.00363 * 0.26875 * 15 13 12 17 17 Si 1.86802 * 119.99951 * 180.27713 * 15 13 12 18 18 H 1.48496 * 109.47111 * 59.99497 * 17 15 13 19 19 H 1.48504 * 109.47055 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46907 * 299.99546 * 17 15 13 21 21 C 1.53787 * 113.61277 * 74.29681 * 4 2 1 22 22 C 1.53959 * 87.01958 * 89.22921 * 21 4 2 23 23 C 1.53778 * 113.61750 * 171.90414 * 4 2 1 24 24 H 1.09005 * 109.47296 * 173.02698 * 1 2 3 25 25 H 1.09007 * 109.47201 * 293.02074 * 1 2 3 26 26 H 1.09001 * 109.47463 * 53.01909 * 1 2 3 27 27 H 1.09002 * 109.47468 * 163.10047 * 5 4 2 28 28 H 1.08999 * 109.46935 * 43.10152 * 5 4 2 29 29 H 1.00900 * 110.99846 * 297.87541 * 6 5 4 30 30 H 1.09003 * 109.47329 * 59.99703 * 7 6 5 31 31 H 1.09005 * 109.47062 * 300.00147 * 7 6 5 32 32 H 1.09006 * 109.46965 * 65.00761 * 12 8 7 33 33 H 1.08997 * 109.47596 * 305.00425 * 12 8 7 34 34 H 0.96998 * 120.00314 * 180.02562 * 16 15 13 35 35 H 1.09004 * 113.61368 * 203.74839 * 21 4 2 36 36 H 1.08994 * 113.61465 * 334.65449 * 21 4 2 37 37 H 1.08991 * 113.53916 * 270.81434 * 22 21 4 38 38 H 1.08998 * 113.74419 * 139.93740 * 22 21 4 39 39 H 1.09001 * 113.61175 * 25.35234 * 23 4 2 40 40 H 1.08996 * 113.61802 * 156.16567 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2220 -0.7856 -1.5833 5 6 1.6053 -2.1779 -1.7321 6 7 2.3790 -3.1433 -0.9401 7 6 1.7341 -4.4631 -0.9423 8 6 2.5674 -5.4394 -0.1097 9 1 2.7158 -5.0299 0.8895 10 6 3.8742 -5.6436 -0.7554 11 7 4.8829 -5.8013 -1.2524 12 6 1.8337 -6.7783 -0.0083 13 6 2.5935 -7.6989 0.9117 14 1 3.5084 -7.3629 1.3771 15 6 2.1181 -8.9684 1.1631 16 7 1.0044 -9.3779 0.5960 17 14 3.0557 -10.1069 2.3095 18 1 3.1503 -9.4861 3.6552 19 1 2.3406 -11.4043 2.4125 20 1 4.4213 -10.3351 1.7725 21 6 1.9890 0.1246 -2.8008 22 6 3.4367 0.6131 -2.6116 23 6 3.7198 -0.7352 -1.9281 24 1 -0.3634 -1.0201 -0.1248 25 1 -0.3634 0.4019 0.9459 26 1 -0.3634 0.6182 -0.8209 27 1 1.6221 -2.4725 -2.7815 28 1 0.5752 -2.1588 -1.3765 29 1 3.3296 -3.2049 -1.2729 30 1 1.6608 -4.8299 -1.9661 31 1 0.7352 -4.3801 -0.5138 32 1 1.7638 -7.2301 -0.9978 33 1 0.8317 -6.6145 0.3880 34 1 0.6697 -10.2709 0.7731 35 1 1.8305 -0.4218 -3.7305 36 1 1.2404 0.8984 -2.6305 37 1 3.5234 1.4687 -1.9420 38 1 3.9792 0.7508 -3.5469 39 1 4.3665 -0.6546 -1.0544 40 1 4.0357 -1.5180 -2.6177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564861436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:50 Heat of formation + Delta-G solvation = -0.534329 kcal Electronic energy + Delta-G solvation = -20134.275001 eV Core-core repulsion = 17076.192919 eV Total energy + Delta-G solvation = -3058.082082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.35709 -37.27275 -35.84344 -34.91536 -33.52411 -31.64261 -29.36472 -28.07086 -26.12976 -25.66711 -23.02827 -22.31918 -21.69513 -20.24379 -17.26902 -16.79773 -16.72444 -16.35146 -15.64278 -15.18169 -15.03153 -14.75310 -14.35053 -13.99573 -13.68428 -13.30977 -13.08492 -12.83636 -12.67183 -12.65244 -12.33094 -12.15343 -12.03746 -11.96554 -11.65496 -11.43404 -11.28993 -11.03800 -10.80015 -10.68499 -10.58249 -10.43977 -10.28456 -9.97320 -9.55650 -9.25768 -8.50266 -8.45867 -8.18439 -6.10979 -4.14179 1.43207 2.50080 3.30690 3.35166 3.38624 3.54740 3.60177 3.64842 3.91051 4.33857 4.38956 4.47728 4.58593 4.73063 4.79455 4.95974 5.08779 5.21770 5.27330 5.28039 5.40680 5.44177 5.51315 5.58041 5.64817 5.70564 5.73102 5.83647 5.94554 6.10574 6.14184 6.32153 6.51868 6.99237 7.34621 7.41652 7.50959 7.83938 8.21401 8.38160 8.90385 9.51588 10.99801 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.003451 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.016109 B = 8110.896005 C = 8467.816141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.490 4.490 2 S 1.286 4.714 3 O -0.855 6.855 4 C -0.398 4.398 5 C 0.096 3.904 6 N -0.689 5.689 7 C 0.066 3.934 8 C 0.006 3.994 9 H 0.115 0.885 10 C 0.240 3.760 11 N -0.477 5.477 12 C 0.032 3.968 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.116 4.116 22 C -0.155 4.155 23 C -0.093 4.093 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.342 0.658 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.023 0.977 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 17.224 -2.854 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.483 4.517 3 O -0.851 6.851 4 C -0.496 4.496 5 C -0.034 4.034 6 N -0.321 5.321 7 C -0.064 4.064 8 C -0.016 4.016 9 H 0.133 0.867 10 C -0.076 4.076 11 N -0.154 5.154 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.155 4.155 22 C -0.192 4.192 23 C -0.131 4.131 24 H 0.135 0.865 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.053 0.947 31 H 0.113 0.887 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.039 17.384 -2.332 17.570 hybrid contribution -0.672 -0.048 -1.939 2.053 sum -1.711 17.336 -4.271 17.936 Atomic orbital electron populations 1.27671 1.21944 1.08188 1.07000 1.71124 0.85972 0.97036 0.97562 1.93013 1.73677 1.37552 1.80843 1.29127 1.03404 1.03518 1.13518 1.21514 0.97387 0.88367 0.96159 1.60529 1.06072 1.08507 1.56967 1.22108 0.98757 0.86701 0.98848 1.19349 0.84585 0.99570 0.98089 0.86736 1.29322 0.94524 0.91270 0.92511 1.81028 1.12704 1.10619 1.11050 1.19164 0.95762 0.87536 0.98190 1.21113 1.08941 0.98469 1.27989 0.92489 1.24942 0.94924 0.98040 0.95993 1.69922 1.20811 1.18985 1.43369 0.86665 0.80036 0.80007 0.81437 1.19960 1.21257 1.20300 1.22895 0.97753 0.97576 0.97258 1.23109 0.96075 0.98402 1.01636 1.22418 0.92218 0.97680 1.00792 0.86542 0.87590 0.90420 0.94591 0.90146 0.83970 0.94714 0.88720 0.95867 0.94120 0.92751 0.89789 0.92183 0.88532 0.91327 0.90598 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.67 10.39 101.05 1.05 -2.62 16 2 S 1.29 11.51 13.27 -107.50 -1.43 10.08 16 3 O -0.86 -12.15 16.22 -35.23 -0.57 -12.72 16 4 C -0.40 -3.54 0.97 -89.81 -0.09 -3.63 16 5 C 0.10 0.83 5.20 -3.82 -0.02 0.81 16 6 N -0.69 -7.03 6.40 -113.78 -0.73 -7.75 16 7 C 0.07 0.80 5.11 -3.83 -0.02 0.78 16 8 C 0.01 0.10 2.42 -93.41 -0.23 -0.13 16 9 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 10 C 0.24 4.47 12.97 -20.78 -0.27 4.20 16 11 N -0.48 -9.78 18.53 42.13 0.78 -8.99 16 12 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 13 C -0.53 -13.38 8.60 -34.44 -0.30 -13.68 16 14 H 0.06 1.44 7.59 -52.49 -0.40 1.04 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 17 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.12 -1.09 7.19 -25.82 -0.19 -1.28 16 22 C -0.15 -1.58 7.67 -25.82 -0.20 -1.78 16 23 C -0.09 -0.88 6.33 -25.92 -0.16 -1.05 16 24 H 0.12 0.68 6.66 -51.92 -0.35 0.33 16 25 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.04 0.33 7.83 -51.93 -0.41 -0.08 16 28 H 0.08 0.58 6.22 -51.93 -0.32 0.25 16 29 H 0.34 3.78 6.81 -39.29 -0.27 3.51 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 36 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.10 1.18 6.69 -51.93 -0.35 0.83 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.09 0.81 7.88 -51.93 -0.41 0.40 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -32.04 342.51 -7.97 -40.02 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.27 Total: -1.20 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.64 Total: -16.22 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.79 Total: -40.79 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.57 Total: -12.72 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 11.51 SS G_CDS: -1.43 Total: 10.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.04 -7.97 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564861436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.481 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds