Wall clock time and date at job start Tue Mar 31 2020 05:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42098 * 109.47043 * 2 1 4 4 C 1.81399 * 103.00019 * 243.61004 * 2 1 3 5 5 C 1.52998 * 112.85123 * 303.10528 * 4 2 1 6 6 N 1.46904 * 109.46962 * 283.10211 * 5 4 2 7 7 C 1.46893 * 110.99967 * 173.92612 * 6 5 4 8 8 C 1.52998 * 109.47216 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46992 * 55.00233 * 8 7 6 10 10 C 1.47190 * 109.47479 * 294.99977 * 8 7 6 11 11 N 6.68148 * 117.34394 * 192.18230 * 2 1 3 12 12 C 1.53004 * 109.47093 * 174.99434 * 8 7 6 13 13 C 1.50708 * 109.46813 * 185.00168 * 12 8 7 14 14 H 1.08001 * 120.00242 * 359.97438 * 13 12 8 15 15 C 1.37875 * 119.99645 * 179.73256 * 13 12 8 16 16 N 1.31516 * 120.00363 * 0.26875 * 15 13 12 17 17 Si 1.86802 * 119.99951 * 180.27713 * 15 13 12 18 18 H 1.48496 * 109.47111 * 59.99497 * 17 15 13 19 19 H 1.48504 * 109.47055 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46907 * 299.99546 * 17 15 13 21 21 C 1.53787 * 113.61277 * 74.29681 * 4 2 1 22 22 C 1.53959 * 87.01958 * 89.22921 * 21 4 2 23 23 C 1.53778 * 113.61750 * 171.90414 * 4 2 1 24 24 H 1.09005 * 109.47296 * 173.02698 * 1 2 3 25 25 H 1.09007 * 109.47201 * 293.02074 * 1 2 3 26 26 H 1.09001 * 109.47463 * 53.01909 * 1 2 3 27 27 H 1.09002 * 109.47468 * 163.10047 * 5 4 2 28 28 H 1.08999 * 109.46935 * 43.10152 * 5 4 2 29 29 H 1.00900 * 110.99846 * 297.87541 * 6 5 4 30 30 H 1.09003 * 109.47329 * 59.99703 * 7 6 5 31 31 H 1.09005 * 109.47062 * 300.00147 * 7 6 5 32 32 H 1.09006 * 109.46965 * 65.00761 * 12 8 7 33 33 H 1.08997 * 109.47596 * 305.00425 * 12 8 7 34 34 H 0.96998 * 120.00314 * 180.02562 * 16 15 13 35 35 H 1.09004 * 113.61368 * 203.74839 * 21 4 2 36 36 H 1.08994 * 113.61465 * 334.65449 * 21 4 2 37 37 H 1.08991 * 113.53916 * 270.81434 * 22 21 4 38 38 H 1.08998 * 113.74419 * 139.93740 * 22 21 4 39 39 H 1.09001 * 113.61175 * 25.35234 * 23 4 2 40 40 H 1.08996 * 113.61802 * 156.16567 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2220 -0.7856 -1.5833 5 6 1.6053 -2.1779 -1.7321 6 7 2.3790 -3.1433 -0.9401 7 6 1.7341 -4.4631 -0.9423 8 6 2.5674 -5.4394 -0.1097 9 1 2.7158 -5.0299 0.8895 10 6 3.8742 -5.6436 -0.7554 11 7 4.8829 -5.8013 -1.2524 12 6 1.8337 -6.7783 -0.0083 13 6 2.5935 -7.6989 0.9117 14 1 3.5084 -7.3629 1.3771 15 6 2.1181 -8.9684 1.1631 16 7 1.0044 -9.3779 0.5960 17 14 3.0557 -10.1069 2.3095 18 1 3.1503 -9.4861 3.6552 19 1 2.3406 -11.4043 2.4125 20 1 4.4213 -10.3351 1.7725 21 6 1.9890 0.1246 -2.8008 22 6 3.4367 0.6131 -2.6116 23 6 3.7198 -0.7352 -1.9281 24 1 -0.3634 -1.0201 -0.1248 25 1 -0.3634 0.4019 0.9459 26 1 -0.3634 0.6182 -0.8209 27 1 1.6221 -2.4725 -2.7815 28 1 0.5752 -2.1588 -1.3765 29 1 3.3296 -3.2049 -1.2729 30 1 1.6608 -4.8299 -1.9661 31 1 0.7352 -4.3801 -0.5138 32 1 1.7638 -7.2301 -0.9978 33 1 0.8317 -6.6145 0.3880 34 1 0.6697 -10.2709 0.7731 35 1 1.8305 -0.4218 -3.7305 36 1 1.2404 0.8984 -2.6305 37 1 3.5234 1.4687 -1.9420 38 1 3.9792 0.7508 -3.5469 39 1 4.3665 -0.6546 -1.0544 40 1 4.0357 -1.5180 -2.6177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564861436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:50 Heat of formation + Delta-G solvation = -22.290681 kcal Electronic energy + Delta-G solvation = -20135.218427 eV Core-core repulsion = 17076.192919 eV Total energy + Delta-G solvation = -3059.025508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.14175 -38.55931 -36.80271 -36.11479 -35.21856 -33.17945 -30.11969 -29.16189 -27.32222 -26.63592 -24.28140 -23.40223 -22.99929 -21.00970 -18.47705 -18.13208 -17.96261 -17.37133 -16.59251 -16.53856 -15.97771 -15.78755 -15.41368 -14.80620 -14.78529 -14.50982 -14.26311 -14.18346 -13.82008 -13.56862 -13.38573 -13.33538 -13.17432 -12.98364 -12.83550 -12.77402 -12.49550 -12.38121 -12.25016 -12.22615 -11.83267 -11.52627 -11.32857 -11.21627 -10.95828 -10.76595 -10.46672 -9.32562 -8.95167 -8.12114 -6.18876 0.72291 1.46783 1.48266 1.54609 1.81990 2.08278 2.10039 2.47907 2.90467 3.07587 3.24208 3.40337 3.58284 3.66955 3.81079 3.95135 4.31594 4.35232 4.44822 4.52621 4.60089 4.64308 4.69845 4.70782 4.85832 4.87925 4.93039 4.96895 5.13063 5.15668 5.19963 5.29470 5.32848 5.59283 5.75897 5.89632 6.11238 6.31110 6.45948 6.88434 6.98369 7.49556 8.98324 Molecular weight = 284.13amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.003451 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.016109 B = 8110.896005 C = 8467.816141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.486 4.486 2 S 1.305 4.695 3 O -0.913 6.913 4 C -0.388 4.388 5 C 0.098 3.902 6 N -0.683 5.683 7 C 0.076 3.924 8 C 0.017 3.983 9 H 0.134 0.866 10 C 0.252 3.748 11 N -0.513 5.513 12 C 0.037 3.963 13 C -0.536 4.536 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.942 3.058 18 H -0.262 1.262 19 H -0.286 1.286 20 H -0.283 1.283 21 C -0.114 4.114 22 C -0.161 4.161 23 C -0.094 4.094 24 H 0.141 0.859 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.338 0.662 30 H 0.030 0.970 31 H 0.119 0.881 32 H -0.003 1.003 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 17.417 -2.461 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 1.504 4.496 3 O -0.908 6.908 4 C -0.486 4.486 5 C -0.032 4.032 6 N -0.314 5.314 7 C -0.054 4.054 8 C -0.005 4.005 9 H 0.152 0.848 10 C -0.064 4.064 11 N -0.190 5.190 12 C -0.002 4.002 13 C -0.574 4.574 14 H 0.073 0.927 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.769 3.231 18 H -0.186 1.186 19 H -0.212 1.212 20 H -0.209 1.209 21 C -0.153 4.153 22 C -0.198 4.198 23 C -0.133 4.133 24 H 0.159 0.841 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.122 0.878 29 H 0.155 0.845 30 H 0.048 0.952 31 H 0.137 0.863 32 H 0.015 0.985 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.859 17.600 -1.926 17.802 hybrid contribution -0.440 -0.108 -2.092 2.141 sum -2.299 17.492 -4.019 18.094 Atomic orbital electron populations 1.27623 1.19711 1.09751 1.07370 1.70462 0.86866 0.95177 0.97080 1.92940 1.75849 1.39922 1.82120 1.29001 1.02941 1.03619 1.13078 1.21583 0.98172 0.87256 0.96215 1.60497 1.05904 1.07629 1.57374 1.21985 0.98949 0.86540 0.97928 1.19321 0.83309 0.98001 0.99889 0.84836 1.29790 0.94637 0.90286 0.91669 1.81037 1.13975 1.11591 1.12445 1.19005 0.96033 0.89441 0.95743 1.21586 1.08862 0.99093 1.27860 0.92672 1.25647 0.95751 0.99698 0.97515 1.70014 1.22190 1.19316 1.44908 0.85844 0.78401 0.78516 0.80367 1.18648 1.21154 1.20949 1.22908 0.96845 0.97534 0.97978 1.23070 0.97185 0.98032 1.01556 1.22439 0.92785 0.97243 1.00805 0.84102 0.86676 0.91002 0.94375 0.87847 0.84453 0.95186 0.86306 0.98470 0.93981 0.92899 0.88615 0.92753 0.90836 0.90668 0.90743 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -5.90 10.39 113.37 1.18 -4.73 16 2 S 1.30 21.46 13.27 -56.49 -0.75 20.71 16 3 O -0.91 -26.00 16.22 -148.98 -2.42 -28.42 16 4 C -0.39 -6.15 0.97 -10.27 -0.01 -6.16 16 5 C 0.10 1.36 5.20 86.30 0.45 1.81 16 6 N -0.68 -11.84 6.40 -513.89 -3.29 -15.13 16 7 C 0.08 1.62 5.11 86.30 0.44 2.06 16 8 C 0.02 0.50 2.42 -12.60 -0.03 0.47 16 9 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 10 C 0.25 9.03 12.97 89.44 1.16 10.19 16 11 N -0.51 -20.60 18.53 20.00 0.37 -20.23 16 12 C 0.04 1.53 4.42 29.85 0.13 1.66 16 13 C -0.54 -26.72 8.60 25.60 0.22 -26.49 16 14 H 0.06 2.71 7.59 -2.91 -0.02 2.69 16 15 C 0.01 0.67 5.46 84.65 0.46 1.13 16 16 N -0.92 -51.17 13.29 21.45 0.28 -50.89 16 17 Si 0.94 41.93 29.54 68.60 2.03 43.96 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 C -0.11 -1.98 7.19 31.18 0.22 -1.75 16 22 C -0.16 -3.22 7.67 31.18 0.24 -2.99 16 23 C -0.09 -1.69 6.33 31.12 0.20 -1.50 16 24 H 0.14 1.03 6.66 -2.39 -0.02 1.01 16 25 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.04 0.56 7.83 -2.39 -0.02 0.55 16 28 H 0.10 1.00 6.22 -2.39 -0.01 0.99 16 29 H 0.34 6.63 6.81 -89.69 -0.61 6.02 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.10 1.44 7.89 -2.39 -0.02 1.43 16 36 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 37 H 0.07 1.85 6.69 -2.39 -0.02 1.83 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 40 H 0.09 1.56 7.88 -2.39 -0.02 1.54 16 Total: -1.00 -68.94 342.51 1.31 -67.63 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.42 Total: 8.66 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 4.66 Total: -26.30 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.63 Total: -86.24 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -2.42 Total: -28.42 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 21.46 SS G_CDS: -0.75 Total: 20.71 kcal Total: -68.94 1.31 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564861436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.341 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds