Wall clock time and date at job start Tue Mar 31 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 C 1.53002 * 109.46893 * 239.99619 * 2 1 3 5 5 N 1.46501 * 109.46788 * 119.99796 * 2 1 3 6 6 N 1.40579 * 127.38629 * 0.02562 * 5 2 1 7 7 N 1.28904 * 106.83248 * 179.97438 * 6 5 2 8 8 N 1.28422 * 110.34263 * 359.97438 * 7 6 5 9 9 C 1.31539 * 110.49813 * 0.02562 * 8 7 6 10 10 S 1.76205 * 126.45097 * 179.97438 * 9 8 7 11 11 C 1.80996 * 100.00109 * 0.02562 * 10 9 8 12 12 C 1.52993 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47405 * 300.00051 * 12 11 10 14 14 C 1.53000 * 109.47184 * 60.00388 * 12 11 10 15 15 C 1.50708 * 109.47204 * 180.02562 * 12 11 10 16 16 H 1.07995 * 119.99906 * 0.02562 * 15 12 11 17 17 C 1.37871 * 119.99818 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00520 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99757 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46833 * 89.99690 * 19 17 15 21 21 H 1.48495 * 109.47074 * 209.99650 * 19 17 15 22 22 H 1.48494 * 109.47106 * 329.99961 * 19 17 15 23 23 H 1.08999 * 109.47210 * 300.00366 * 1 2 3 24 24 H 1.08998 * 109.47238 * 59.99786 * 1 2 3 25 25 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46963 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47081 * 299.99449 * 3 2 1 28 28 H 1.08999 * 109.47435 * 59.99772 * 3 2 1 29 29 H 1.08994 * 109.47275 * 300.00148 * 4 2 1 30 30 H 1.08998 * 109.46694 * 60.00261 * 4 2 1 31 31 H 1.08997 * 109.47156 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47379 * 300.00465 * 11 10 9 33 33 H 1.09008 * 109.47144 * 60.00236 * 11 10 9 34 34 H 1.08998 * 109.47205 * 60.00010 * 13 12 11 35 35 H 1.09003 * 109.47594 * 180.02562 * 13 12 11 36 36 H 1.08996 * 109.47204 * 300.00279 * 13 12 11 37 37 H 1.08994 * 109.47396 * 59.99665 * 14 12 11 38 38 H 1.09003 * 109.47514 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.46782 * 299.99596 * 14 12 11 40 40 H 0.97005 * 119.99959 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2497 -1.2795 2.2153 7 7 2.0786 -1.7733 3.0701 8 7 3.2878 -1.5574 2.6954 9 6 3.3066 -0.8992 1.5567 10 16 4.7388 -0.3855 0.6679 11 6 6.0327 -1.0196 1.7633 12 6 7.4059 -0.6826 1.1789 13 6 7.5450 -1.3277 -0.2015 14 6 7.5464 0.8353 1.0490 15 6 8.4833 -1.2111 2.0906 16 1 8.2153 -1.7352 2.9960 17 6 9.8109 -1.0254 1.7687 18 7 10.1373 -0.3876 0.6659 19 14 11.1464 -1.6799 2.8992 20 1 11.4997 -3.0653 2.4977 21 1 12.3483 -0.8136 2.7988 22 1 10.6527 -1.6811 4.2997 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7210 -1.2495 32 1 5.9333 -0.5604 2.7469 33 1 5.9329 -2.1011 1.8555 34 1 6.7658 -0.9459 -0.8611 35 1 8.5235 -1.0881 -0.6177 36 1 7.4449 -2.4091 -0.1089 37 1 7.4473 1.2949 2.0323 38 1 8.5249 1.0755 0.6330 39 1 6.7672 1.2172 0.3893 40 1 11.0715 -0.2574 0.4393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565239530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:35 Heat of formation + Delta-G solvation = 96.185927 kcal Electronic energy + Delta-G solvation = -20892.683081 eV Core-core repulsion = 17871.087856 eV Total energy + Delta-G solvation = -3021.595226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.65672 -37.79418 -36.11122 -32.14467 -31.99759 -31.59744 -27.86341 -27.73987 -26.52014 -25.80495 -25.20826 -24.48771 -22.64429 -20.72917 -19.04963 -17.57418 -16.38304 -16.34425 -16.07510 -14.81655 -14.69832 -14.49116 -14.13634 -13.45867 -13.42615 -13.23097 -12.82057 -12.80568 -12.60428 -12.34339 -12.10560 -11.85067 -11.76290 -11.58042 -11.57070 -11.20406 -10.96783 -10.88869 -10.68465 -10.60533 -10.41819 -10.32442 -10.24605 -10.03912 -9.67272 -9.55470 -8.78140 -8.44986 -7.52457 -6.07097 -4.17861 1.11240 1.13381 2.17971 2.48046 2.57960 3.26550 3.33821 3.38314 4.05887 4.36718 4.37105 4.48823 4.84264 5.12147 5.19896 5.21456 5.21711 5.34830 5.37854 5.45960 5.50502 5.60415 5.75928 5.87889 5.91962 5.99473 6.00399 6.30423 6.42577 6.70418 6.78324 6.88965 6.91812 7.24997 7.47407 7.65185 7.92773 8.05439 8.30083 8.66220 8.81629 9.48209 10.94195 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.004456 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.468198 B = 6281.686310 C = 6828.872824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.173 3.827 3 C -0.169 4.169 4 C -0.169 4.169 5 N -0.362 5.362 6 N -0.099 5.099 7 N -0.042 5.042 8 N -0.337 5.337 9 C 0.218 3.782 10 S 0.021 5.979 11 C -0.081 4.081 12 C 0.080 3.920 13 C -0.136 4.136 14 C -0.136 4.136 15 C -0.505 4.505 16 H 0.059 0.941 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.015 0.985 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.089 0.911 39 H 0.015 0.985 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.520 3.672 -6.337 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.089 3.911 3 C -0.228 4.228 4 C -0.228 4.228 5 N -0.163 5.163 6 N -0.086 5.086 7 N -0.038 5.038 8 N -0.194 5.194 9 C -0.165 4.165 10 S 0.249 5.751 11 C -0.229 4.229 12 C 0.078 3.922 13 C -0.194 4.194 14 C -0.194 4.194 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.134 4.134 18 N -0.523 5.523 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.033 0.967 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.108 0.892 39 H 0.033 0.967 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.981 3.686 -6.349 16.683 hybrid contribution 0.789 -0.624 1.054 1.457 sum -14.192 3.062 -5.295 15.454 Atomic orbital electron populations 1.21964 0.90933 1.03875 1.03453 1.21091 0.96687 0.92440 0.80840 1.22359 1.03835 0.92765 1.03815 1.22360 1.03837 1.01126 0.95454 1.51904 1.03271 1.41552 1.19549 1.82301 1.16973 1.13892 0.95384 1.77810 0.95219 1.12538 1.18243 1.74995 1.13987 1.19881 1.10512 1.28362 0.92921 0.98421 0.96814 1.85897 0.90106 1.69419 1.29660 1.24374 0.95070 1.03801 0.99669 1.18089 0.86791 0.93569 0.93763 1.21937 1.02102 0.98402 0.96984 1.21935 1.02105 0.96676 0.98706 1.20982 0.89894 1.36458 1.07111 0.92230 1.24867 0.98426 0.94825 0.95233 1.69798 1.17585 1.41322 1.23615 0.86546 0.81200 0.78798 0.81216 1.20643 1.21208 1.19827 0.91145 0.90118 0.91141 0.89944 0.89394 0.91456 0.91457 0.89394 0.89942 0.89500 0.89507 0.96657 0.89251 0.95064 0.95056 0.89249 0.96653 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.08 37.16 0.30 -0.94 16 2 C 0.17 1.84 1.10 -131.82 -0.14 1.70 16 3 C -0.17 -1.60 8.52 37.16 0.32 -1.28 16 4 C -0.17 -1.60 8.52 37.16 0.32 -1.28 16 5 N -0.36 -5.42 3.51 -48.59 -0.17 -5.59 16 6 N -0.10 -1.67 13.08 60.35 0.79 -0.88 16 7 N -0.04 -0.81 13.38 60.35 0.81 0.00 16 8 N -0.34 -6.58 11.57 30.50 0.35 -6.23 16 9 C 0.22 3.74 7.65 -89.18 -0.68 3.06 16 10 S 0.02 0.35 15.15 -107.50 -1.63 -1.28 16 11 C -0.08 -1.61 4.17 37.15 0.16 -1.46 16 12 C 0.08 1.80 0.52 -155.66 -0.08 1.72 16 13 C -0.14 -2.98 8.01 37.16 0.30 -2.69 16 14 C -0.14 -2.98 8.01 37.16 0.30 -2.69 16 15 C -0.50 -12.80 8.01 -34.44 -0.28 -13.07 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 18 N -0.88 -22.95 9.35 55.43 0.52 -22.44 16 19 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.90 6.03 -51.93 -0.31 0.58 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.90 6.03 -51.93 -0.31 0.59 16 32 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 33 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 34 H 0.01 0.29 6.91 -51.93 -0.36 -0.07 16 35 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 39 H 0.01 0.29 6.91 -51.93 -0.36 -0.07 16 40 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -27.62 328.26 -5.16 -32.79 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.17 Total: -1.32 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 0.41 Total: -15.29 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 2.30 Total: -35.13 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.63 Total: -1.28 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.62 -5.16 -32.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565239530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.972 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds