Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 C 1.53002 * 109.46893 * 239.99619 * 2 1 3 5 5 N 1.46501 * 109.46788 * 119.99796 * 2 1 3 6 6 N 1.40579 * 127.38629 * 0.02562 * 5 2 1 7 7 N 1.28904 * 106.83248 * 179.97438 * 6 5 2 8 8 N 1.28422 * 110.34263 * 359.97438 * 7 6 5 9 9 C 1.31539 * 110.49813 * 0.02562 * 8 7 6 10 10 S 1.76205 * 126.45097 * 179.97438 * 9 8 7 11 11 C 1.80996 * 100.00109 * 0.02562 * 10 9 8 12 12 C 1.52993 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47405 * 300.00051 * 12 11 10 14 14 C 1.53000 * 109.47184 * 60.00388 * 12 11 10 15 15 C 1.50708 * 109.47204 * 180.02562 * 12 11 10 16 16 H 1.07995 * 119.99906 * 0.02562 * 15 12 11 17 17 C 1.37871 * 119.99818 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00520 * 359.97438 * 17 15 12 19 19 Si 1.86806 * 119.99757 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46833 * 89.99690 * 19 17 15 21 21 H 1.48495 * 109.47074 * 209.99650 * 19 17 15 22 22 H 1.48494 * 109.47106 * 329.99961 * 19 17 15 23 23 H 1.08999 * 109.47210 * 300.00366 * 1 2 3 24 24 H 1.08998 * 109.47238 * 59.99786 * 1 2 3 25 25 H 1.08994 * 109.47281 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46963 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47081 * 299.99449 * 3 2 1 28 28 H 1.08999 * 109.47435 * 59.99772 * 3 2 1 29 29 H 1.08994 * 109.47275 * 300.00148 * 4 2 1 30 30 H 1.08998 * 109.46694 * 60.00261 * 4 2 1 31 31 H 1.08997 * 109.47156 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47379 * 300.00465 * 11 10 9 33 33 H 1.09008 * 109.47144 * 60.00236 * 11 10 9 34 34 H 1.08998 * 109.47205 * 60.00010 * 13 12 11 35 35 H 1.09003 * 109.47594 * 180.02562 * 13 12 11 36 36 H 1.08996 * 109.47204 * 300.00279 * 13 12 11 37 37 H 1.08994 * 109.47396 * 59.99665 * 14 12 11 38 38 H 1.09003 * 109.47514 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.46782 * 299.99596 * 14 12 11 40 40 H 0.97005 * 119.99959 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2497 -1.2795 2.2153 7 7 2.0786 -1.7733 3.0701 8 7 3.2878 -1.5574 2.6954 9 6 3.3066 -0.8992 1.5567 10 16 4.7388 -0.3855 0.6679 11 6 6.0327 -1.0196 1.7633 12 6 7.4059 -0.6826 1.1789 13 6 7.5450 -1.3277 -0.2015 14 6 7.5464 0.8353 1.0490 15 6 8.4833 -1.2111 2.0906 16 1 8.2153 -1.7352 2.9960 17 6 9.8109 -1.0254 1.7687 18 7 10.1373 -0.3876 0.6659 19 14 11.1464 -1.6799 2.8992 20 1 11.4997 -3.0653 2.4977 21 1 12.3483 -0.8136 2.7988 22 1 10.6527 -1.6811 4.2997 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7210 -1.2495 32 1 5.9333 -0.5604 2.7469 33 1 5.9329 -2.1011 1.8555 34 1 6.7658 -0.9459 -0.8611 35 1 8.5235 -1.0881 -0.6177 36 1 7.4449 -2.4091 -0.1089 37 1 7.4473 1.2949 2.0323 38 1 8.5249 1.0755 0.6330 39 1 6.7672 1.2172 0.3893 40 1 11.0715 -0.2574 0.4393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565239530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = 81.273268 kcal Electronic energy + Delta-G solvation = -20893.329743 eV Core-core repulsion = 17871.087856 eV Total energy + Delta-G solvation = -3022.241887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.98505 -38.73565 -37.89381 -33.57257 -33.36251 -33.23982 -28.63778 -28.46538 -28.11090 -27.58382 -27.15155 -25.75654 -23.97291 -21.84999 -20.76536 -18.83300 -17.94169 -17.66479 -17.43115 -16.68213 -15.90463 -15.46802 -15.37887 -15.03573 -14.74430 -14.56054 -14.14941 -13.98120 -13.61595 -13.33290 -13.27930 -13.17602 -12.99471 -12.84852 -12.70788 -12.60992 -12.59227 -12.38269 -12.25760 -12.10684 -12.04523 -11.92948 -11.56978 -11.45749 -11.41402 -11.32048 -10.58409 -10.38154 -8.87084 -8.01276 -6.17031 -0.21071 -0.19287 1.01777 1.07237 1.11150 1.44286 1.48106 1.55897 2.47831 3.08556 3.22748 3.59895 3.63005 3.73277 4.11001 4.18577 4.23772 4.30217 4.44342 4.56007 4.61252 4.64935 4.71929 4.77228 4.77746 4.98316 5.03114 5.06150 5.12230 5.16988 5.17899 5.24378 5.30277 5.45594 5.65585 5.69450 6.12447 6.19773 6.42379 6.85885 7.29525 7.50633 8.97647 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.004456 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.468198 B = 6281.686310 C = 6828.872824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.155 3.845 3 C -0.167 4.167 4 C -0.167 4.167 5 N -0.346 5.346 6 N -0.095 5.095 7 N -0.067 5.067 8 N -0.367 5.367 9 C 0.204 3.796 10 S 0.081 5.919 11 C -0.086 4.086 12 C 0.074 3.926 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.524 4.524 16 H 0.046 0.954 17 C 0.032 3.968 18 N -0.898 5.898 19 Si 0.943 3.057 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.276 1.276 23 H 0.061 0.939 24 H 0.118 0.882 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.041 4.642 -8.024 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.074 3.926 3 C -0.226 4.226 4 C -0.226 4.226 5 N -0.147 5.147 6 N -0.082 5.082 7 N -0.063 5.063 8 N -0.224 5.224 9 C -0.179 4.179 10 S 0.308 5.692 11 C -0.235 4.235 12 C 0.071 3.929 13 C -0.185 4.185 14 C -0.185 4.185 15 C -0.564 4.564 16 H 0.065 0.935 17 C -0.169 4.169 18 N -0.537 5.537 19 Si 0.770 3.230 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.201 1.201 23 H 0.080 0.920 24 H 0.137 0.863 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.511 4.663 -8.048 18.951 hybrid contribution 1.130 -0.881 1.501 2.075 sum -15.382 3.782 -6.548 17.140 Atomic orbital electron populations 1.22005 0.89065 1.03812 1.04927 1.21765 0.98290 0.92989 0.79568 1.22417 1.02794 0.91908 1.05468 1.22417 1.02797 1.01252 0.96123 1.52336 1.02260 1.40314 1.19829 1.82193 1.17111 1.13354 0.95533 1.77790 0.95288 1.13902 1.19306 1.74903 1.14674 1.20992 1.11876 1.28384 0.94008 0.98812 0.96715 1.85492 0.87756 1.68662 1.27265 1.24032 0.96006 1.03276 1.00194 1.18062 0.87455 0.93773 0.93565 1.21791 1.01611 0.98096 0.97004 1.21790 1.01614 0.96340 0.98757 1.21264 0.91235 1.36571 1.07314 0.93521 1.25411 0.99934 0.95205 0.96321 1.69898 1.17740 1.41749 1.24314 0.85790 0.79300 0.78266 0.79640 1.20537 1.20845 1.20135 0.91977 0.86340 0.91976 0.91428 0.85552 0.92066 0.92069 0.85553 0.91426 0.90682 0.90669 0.94140 0.91572 0.95608 0.95594 0.91570 0.94137 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.08 71.98 0.58 -1.37 16 2 C 0.15 2.85 1.10 3.60 0.00 2.85 16 3 C -0.17 -2.59 8.52 71.98 0.61 -1.97 16 4 C -0.17 -2.59 8.52 71.98 0.61 -1.97 16 5 N -0.35 -9.84 3.51 -307.63 -1.08 -10.92 16 6 N -0.09 -3.14 13.08 37.02 0.48 -2.65 16 7 N -0.07 -2.58 13.38 37.02 0.50 -2.08 16 8 N -0.37 -14.41 11.57 -57.41 -0.66 -15.07 16 9 C 0.20 6.84 7.65 179.84 1.38 8.21 16 10 S 0.08 2.52 15.15 -56.49 -0.86 1.67 16 11 C -0.09 -3.45 4.17 71.98 0.30 -3.15 16 12 C 0.07 3.30 0.52 -52.93 -0.03 3.28 16 13 C -0.13 -5.50 8.01 71.98 0.58 -4.93 16 14 C -0.13 -5.50 8.01 71.98 0.58 -4.93 16 15 C -0.52 -27.00 8.01 25.60 0.21 -26.80 16 16 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 17 C 0.03 1.62 5.15 84.65 0.44 2.06 16 18 N -0.90 -46.89 9.35 21.45 0.20 -46.69 16 19 Si 0.94 41.96 29.54 68.60 2.03 43.98 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.26 6.03 -2.39 -0.01 1.25 16 27 H 0.13 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.13 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.26 6.03 -2.39 -0.01 1.25 16 32 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.04 1.50 6.91 -2.39 -0.02 1.48 16 35 H 0.07 3.20 6.07 -2.39 -0.01 3.19 16 36 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 3.20 6.07 -2.39 -0.01 3.19 16 39 H 0.04 1.50 6.91 -2.39 -0.02 1.48 16 40 H 0.26 13.14 8.31 -92.70 -0.77 12.37 16 Total: -1.00 -60.51 328.26 6.89 -53.63 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.02 Total: 6.86 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 5.25 Total: -28.73 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -0.56 Total: -77.41 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -0.86 Total: 1.67 kcal Total: -60.51 6.89 -53.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565239530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.899 kcal (2) G-P(sol) polarization free energy of solvation -60.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds