Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47505 * 2 1 4 4 C 1.53003 * 109.47151 * 239.99769 * 2 1 3 5 5 C 1.53002 * 109.47205 * 120.00128 * 2 1 3 6 6 H 1.09001 * 110.53306 * 297.17275 * 5 2 1 7 7 N 1.47307 * 110.73128 * 174.24472 * 5 2 1 8 8 C 1.34534 * 106.62207 * 241.18682 * 7 5 2 9 9 O 1.21528 * 123.77358 * 180.21017 * 8 7 5 10 10 N 1.33790 * 112.45135 * 0.38689 * 8 7 5 11 11 C 1.46507 * 124.17404 * 179.86772 * 10 8 7 12 12 C 1.53007 * 109.46452 * 269.69502 * 11 10 8 13 13 O 1.42902 * 109.47311 * 65.00114 * 12 11 10 14 14 C 1.42895 * 114.00370 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47139 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00496 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 C 1.34765 * 111.64704 * 359.59303 * 10 8 7 24 24 O 1.21237 * 127.15508 * 180.27174 * 23 10 8 25 25 H 1.09003 * 109.46902 * 300.00492 * 1 2 3 26 26 H 1.08998 * 109.47254 * 59.99906 * 1 2 3 27 27 H 1.08998 * 109.47664 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47400 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46941 * 300.00285 * 3 2 1 30 30 H 1.08998 * 109.46993 * 59.99766 * 3 2 1 31 31 H 1.09007 * 109.47111 * 300.00688 * 4 2 1 32 32 H 1.08998 * 109.46777 * 60.00032 * 4 2 1 33 33 H 1.08994 * 109.47420 * 180.02562 * 4 2 1 34 34 H 0.97003 * 126.69174 * 61.37816 * 7 5 2 35 35 H 1.08992 * 109.47082 * 149.69873 * 11 10 8 36 36 H 1.08998 * 109.47164 * 29.69006 * 11 10 8 37 37 H 1.09000 * 109.47177 * 304.99710 * 12 11 10 38 38 H 1.09001 * 109.46772 * 184.99766 * 12 11 10 39 39 H 1.09002 * 109.46880 * 59.99856 * 14 13 12 40 40 H 1.08998 * 109.47064 * 300.00681 * 14 13 12 41 41 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.7279 -0.1928 2.1500 7 7 3.5061 -0.8583 1.2102 8 6 3.7698 -2.1775 1.2194 9 8 4.8925 -2.6422 1.1977 10 7 2.6577 -2.9206 1.2513 11 6 2.6469 -4.3855 1.2651 12 6 2.6031 -4.9087 -0.1721 13 8 3.8087 -4.5458 -0.8481 14 6 3.8703 -4.9893 -2.2051 15 6 5.1765 -4.5534 -2.8172 16 1 5.8886 -3.9940 -2.2288 17 6 5.4624 -4.8688 -4.1286 18 7 4.5951 -5.5495 -4.8454 19 14 7.0818 -4.3291 -4.8873 20 1 8.2086 -4.9210 -4.1221 21 1 7.1790 -2.8479 -4.8452 22 1 7.1458 -4.7899 -6.2976 23 6 1.5488 -2.1551 1.2751 24 8 0.3978 -2.5343 1.3106 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6765 -1.7490 -1.2493 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7217 -1.2490 34 1 4.1551 -0.1377 1.1857 35 1 1.7689 -4.7373 1.8067 36 1 3.5481 -4.7509 1.7574 37 1 1.7498 -4.4726 -0.6916 38 1 2.5056 -5.9943 -0.1607 39 1 3.0433 -4.5553 -2.7671 40 1 3.7991 -6.0765 -2.2356 41 1 3.7542 -5.8301 -4.4514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566323391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -102.655213 kcal Electronic energy + Delta-G solvation = -24102.261254 eV Core-core repulsion = 20596.998007 eV Total energy + Delta-G solvation = -3505.263247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.48357 -38.54931 -37.67767 -36.81954 -35.49607 -33.94962 -32.85702 -29.77194 -27.67385 -27.39229 -26.95783 -26.38070 -23.27561 -22.85456 -22.44536 -20.25238 -19.38329 -17.89703 -17.16820 -16.82272 -16.51429 -15.82527 -15.49008 -15.30431 -14.70210 -14.65658 -14.29309 -14.20997 -13.73031 -13.62566 -13.34913 -13.16303 -12.58292 -12.41096 -12.23076 -11.92663 -11.81324 -11.69363 -11.57473 -11.33953 -11.16953 -10.98779 -10.71670 -10.49843 -10.43949 -10.07672 -9.93238 -9.49999 -9.33062 -8.87535 -8.60830 -8.23849 -6.43901 -4.11713 1.69310 2.32356 3.18137 3.28006 3.44675 3.47681 3.66515 3.95234 4.29168 4.42133 4.51133 4.66600 4.81217 4.95709 5.13397 5.18075 5.32303 5.33988 5.41860 5.50696 5.53032 5.57931 5.65613 5.76162 5.81784 5.82236 5.92036 5.93005 5.99439 6.12526 6.21222 6.34100 6.74007 6.88942 7.12350 7.22807 7.43680 7.90254 8.18989 8.36898 8.67578 8.82699 9.58391 10.96170 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.005289 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.278403 B = 5292.583128 C = 5735.637470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.146 4.146 5 C 0.103 3.897 6 H 0.121 0.879 7 N -0.728 5.728 8 C 0.704 3.296 9 O -0.515 6.515 10 N -0.566 5.566 11 C 0.124 3.876 12 C 0.041 3.959 13 O -0.372 6.372 14 C 0.188 3.812 15 C -0.591 4.591 16 H 0.061 0.939 17 C 0.017 3.983 18 N -0.912 5.912 19 Si 1.078 2.922 20 H -0.285 1.285 21 H -0.286 1.286 22 H -0.281 1.281 23 C 0.527 3.473 24 O -0.475 6.475 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.437 0.563 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.056 0.944 39 H -0.008 1.008 40 H -0.006 1.006 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 12.744 13.660 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.067 4.067 3 C -0.196 4.196 4 C -0.204 4.204 5 C -0.006 4.006 6 H 0.139 0.861 7 N -0.393 5.393 8 C 0.404 3.596 9 O -0.385 6.385 10 N -0.312 5.312 11 C 0.003 3.997 12 C -0.038 4.038 13 O -0.291 6.291 14 C 0.113 3.887 15 C -0.629 4.629 16 H 0.079 0.921 17 C -0.186 4.186 18 N -0.549 5.549 19 Si 0.905 3.095 20 H -0.212 1.212 21 H -0.213 1.213 22 H -0.207 1.207 23 C 0.315 3.685 24 O -0.346 6.346 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.281 0.719 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.009 0.991 40 H 0.012 0.988 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.520 12.193 12.362 18.922 hybrid contribution -0.986 0.120 1.215 1.569 sum -8.506 12.313 13.577 20.206 Atomic orbital electron populations 1.21987 0.92775 1.03898 1.02060 1.20747 0.96842 0.95844 0.93230 1.21852 1.01262 0.94042 1.02462 1.21917 1.02300 1.00081 0.96069 1.22132 0.81907 0.95014 1.01589 0.86116 1.45483 1.06947 1.06751 1.80138 1.15777 0.84355 0.81867 0.77578 1.91064 1.20566 1.74300 1.52556 1.46256 1.07952 1.09191 1.67777 1.21787 1.04713 0.75297 0.97934 1.22666 0.90343 0.98590 0.92188 1.88035 1.35100 1.78565 1.27391 1.20269 0.97682 0.93148 0.77579 1.21885 1.02784 1.39098 0.99131 0.92066 1.25914 1.04392 0.94688 0.93620 1.70807 1.09251 1.35539 1.39263 0.83421 0.73960 0.76138 0.75976 1.21158 1.21284 1.20659 1.20784 0.85005 0.88529 0.74222 1.90743 1.17586 1.79522 1.46716 0.92327 0.91898 0.90715 0.92302 0.91608 0.92263 0.92725 0.91711 0.91474 0.71898 0.88040 0.87891 0.94161 0.92596 0.99066 0.98789 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.13 37.16 0.30 -1.13 16 2 C -0.07 -0.66 0.65 -154.51 -0.10 -0.76 16 3 C -0.14 -1.05 8.38 37.16 0.31 -0.74 16 4 C -0.15 -2.00 7.96 37.16 0.30 -1.70 16 5 C 0.10 1.08 2.95 -68.21 -0.20 0.88 16 6 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 7 N -0.73 -8.63 5.06 -59.20 -0.30 -8.93 16 8 C 0.70 11.69 8.24 -88.01 -0.73 10.97 16 9 O -0.51 -10.88 17.27 5.34 0.09 -10.79 16 10 N -0.57 -8.79 2.57 -120.73 -0.31 -9.10 16 11 C 0.12 1.90 6.10 -4.03 -0.02 1.87 16 12 C 0.04 0.77 6.28 37.16 0.23 1.00 16 13 O -0.37 -9.26 9.78 -35.23 -0.34 -9.61 16 14 C 0.19 5.26 5.00 36.00 0.18 5.44 16 15 C -0.59 -18.13 9.43 -34.44 -0.32 -18.45 16 16 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -28.46 13.65 55.43 0.76 -27.71 16 19 Si 1.08 26.24 29.90 -169.99 -5.08 21.15 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.53 7.25 6.19 -10.56 -0.07 7.18 16 24 O -0.47 -7.13 15.63 5.59 0.09 -7.05 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.89 5.93 -51.93 -0.31 0.58 16 28 H 0.06 0.44 7.41 -51.93 -0.38 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.89 7.28 -51.92 -0.38 0.51 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.03 7.52 -51.93 -0.39 0.64 16 34 H 0.44 4.15 8.41 -40.82 -0.34 3.80 16 35 H 0.10 1.24 8.00 -51.93 -0.42 0.82 16 36 H 0.10 1.60 7.85 -51.93 -0.41 1.19 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H -0.01 -0.24 8.01 -51.93 -0.42 -0.65 16 40 H -0.01 -0.16 8.01 -51.93 -0.42 -0.57 16 41 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -36.45 338.54 -6.56 -43.00 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.34 Total: -1.05 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.22 Total: 4.96 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.15 Total: -45.74 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.16 Total: -27.44 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.08 Total: 21.15 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.45 -6.56 -43.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566323391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.651 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds