Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47505 * 2 1 4 4 C 1.53003 * 109.47151 * 239.99769 * 2 1 3 5 5 C 1.53002 * 109.47205 * 120.00128 * 2 1 3 6 6 H 1.09001 * 110.53306 * 297.17275 * 5 2 1 7 7 N 1.47307 * 110.73128 * 174.24472 * 5 2 1 8 8 C 1.34534 * 106.62207 * 241.18682 * 7 5 2 9 9 O 1.21528 * 123.77358 * 180.21017 * 8 7 5 10 10 N 1.33790 * 112.45135 * 0.38689 * 8 7 5 11 11 C 1.46507 * 124.17404 * 179.86772 * 10 8 7 12 12 C 1.53007 * 109.46452 * 269.69502 * 11 10 8 13 13 O 1.42902 * 109.47311 * 65.00114 * 12 11 10 14 14 C 1.42895 * 114.00370 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47139 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00496 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 C 1.34765 * 111.64704 * 359.59303 * 10 8 7 24 24 O 1.21237 * 127.15508 * 180.27174 * 23 10 8 25 25 H 1.09003 * 109.46902 * 300.00492 * 1 2 3 26 26 H 1.08998 * 109.47254 * 59.99906 * 1 2 3 27 27 H 1.08998 * 109.47664 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47400 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46941 * 300.00285 * 3 2 1 30 30 H 1.08998 * 109.46993 * 59.99766 * 3 2 1 31 31 H 1.09007 * 109.47111 * 300.00688 * 4 2 1 32 32 H 1.08998 * 109.46777 * 60.00032 * 4 2 1 33 33 H 1.08994 * 109.47420 * 180.02562 * 4 2 1 34 34 H 0.97003 * 126.69174 * 61.37816 * 7 5 2 35 35 H 1.08992 * 109.47082 * 149.69873 * 11 10 8 36 36 H 1.08998 * 109.47164 * 29.69006 * 11 10 8 37 37 H 1.09000 * 109.47177 * 304.99710 * 12 11 10 38 38 H 1.09001 * 109.46772 * 184.99766 * 12 11 10 39 39 H 1.09002 * 109.46880 * 59.99856 * 14 13 12 40 40 H 1.08998 * 109.47064 * 300.00681 * 14 13 12 41 41 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.7279 -0.1928 2.1500 7 7 3.5061 -0.8583 1.2102 8 6 3.7698 -2.1775 1.2194 9 8 4.8925 -2.6422 1.1977 10 7 2.6577 -2.9206 1.2513 11 6 2.6469 -4.3855 1.2651 12 6 2.6031 -4.9087 -0.1721 13 8 3.8087 -4.5458 -0.8481 14 6 3.8703 -4.9893 -2.2051 15 6 5.1765 -4.5534 -2.8172 16 1 5.8886 -3.9940 -2.2288 17 6 5.4624 -4.8688 -4.1286 18 7 4.5951 -5.5495 -4.8454 19 14 7.0818 -4.3291 -4.8873 20 1 8.2086 -4.9210 -4.1221 21 1 7.1790 -2.8479 -4.8452 22 1 7.1458 -4.7899 -6.2976 23 6 1.5488 -2.1551 1.2751 24 8 0.3978 -2.5343 1.3106 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6765 -1.7490 -1.2493 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7217 -1.2490 34 1 4.1551 -0.1377 1.1857 35 1 1.7689 -4.7373 1.8067 36 1 3.5481 -4.7509 1.7574 37 1 1.7498 -4.4726 -0.6916 38 1 2.5056 -5.9943 -0.1607 39 1 3.0433 -4.5553 -2.7671 40 1 3.7991 -6.0765 -2.2356 41 1 3.7542 -5.8301 -4.4514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566323391.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -129.504104 kcal Electronic energy + Delta-G solvation = -24103.425509 eV Core-core repulsion = 20596.998007 eV Total energy + Delta-G solvation = -3506.427502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.62342 -39.77158 -39.07164 -38.30685 -36.82295 -35.47871 -34.77314 -31.23637 -28.80584 -28.43926 -28.23461 -27.83401 -24.93649 -24.54866 -23.97122 -21.45089 -20.33012 -19.27480 -19.06192 -18.12625 -17.76057 -17.54717 -16.87250 -16.49391 -16.15563 -15.85801 -15.66263 -15.64275 -15.37038 -15.07083 -14.53241 -14.42391 -14.07493 -13.71043 -13.61162 -13.21849 -13.09441 -13.03267 -12.64789 -12.58984 -12.57496 -12.41793 -12.14144 -11.93856 -11.86383 -11.72607 -11.07523 -10.94246 -10.90910 -10.82482 -10.43276 -10.37575 -8.88087 -6.58290 0.56984 1.16869 1.47771 1.56752 1.78779 2.01216 2.20552 2.44745 2.91215 2.94225 2.98687 3.41113 3.65294 3.84314 3.90545 3.94835 4.12115 4.18850 4.25110 4.35581 4.37507 4.48312 4.58505 4.63284 4.70310 4.75722 4.83881 4.87371 4.98782 5.00344 5.08207 5.21365 5.34536 5.44994 5.61840 5.85776 5.86348 6.06659 6.28228 6.34171 6.58288 7.16184 7.21588 8.52846 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.005289 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.278403 B = 5292.583128 C = 5735.637470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.135 4.135 4 C -0.144 4.144 5 C 0.109 3.891 6 H 0.169 0.831 7 N -0.707 5.707 8 C 0.697 3.303 9 O -0.571 6.571 10 N -0.575 5.575 11 C 0.127 3.873 12 C 0.033 3.967 13 O -0.389 6.389 14 C 0.201 3.799 15 C -0.619 4.619 16 H 0.045 0.955 17 C -0.026 4.026 18 N -0.925 5.925 19 Si 1.125 2.875 20 H -0.269 1.269 21 H -0.268 1.268 22 H -0.271 1.271 23 C 0.522 3.478 24 O -0.487 6.487 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.018 0.982 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.449 0.551 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.072 0.928 39 H -0.024 1.024 40 H -0.016 1.016 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 15.014 14.663 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.059 4.059 3 C -0.192 4.192 4 C -0.202 4.202 5 C 0.001 3.999 6 H 0.186 0.814 7 N -0.372 5.372 8 C 0.398 3.602 9 O -0.445 6.445 10 N -0.321 5.321 11 C 0.006 3.994 12 C -0.045 4.045 13 O -0.308 6.308 14 C 0.125 3.875 15 C -0.656 4.656 16 H 0.063 0.937 17 C -0.223 4.223 18 N -0.561 5.561 19 Si 0.944 3.056 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.196 1.196 23 C 0.311 3.689 24 O -0.358 6.358 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.296 0.704 35 H 0.157 0.843 36 H 0.118 0.882 37 H 0.053 0.947 38 H 0.090 0.910 39 H -0.006 1.006 40 H 0.002 0.998 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.970 14.506 13.395 21.292 hybrid contribution -1.008 -0.606 0.933 1.501 sum -8.978 13.899 14.328 21.888 Atomic orbital electron populations 1.21958 0.91902 1.02669 1.03840 1.20750 0.97382 0.97010 0.90733 1.21852 1.01360 0.91816 1.04183 1.21904 1.00741 0.98677 0.98877 1.22430 0.80449 0.93167 1.03853 0.81390 1.45409 1.08135 1.05326 1.78354 1.16042 0.83775 0.83205 0.77208 1.91020 1.22570 1.75555 1.55385 1.46365 1.08482 1.09310 1.67905 1.21820 1.06326 0.75820 0.95453 1.22996 0.87858 0.99934 0.93682 1.87997 1.38166 1.78820 1.25809 1.19907 0.96178 0.92142 0.79244 1.22169 1.03672 1.39792 0.99969 0.93650 1.27567 1.07246 0.93511 0.94021 1.70932 1.09316 1.36463 1.39430 0.82869 0.70055 0.76972 0.75741 1.19387 1.19337 1.19590 1.21333 0.84402 0.89706 0.73435 1.90741 1.17875 1.80083 1.47135 0.89636 0.91092 0.93392 0.92227 0.91196 0.89316 0.96282 0.90964 0.93699 0.70419 0.84340 0.88182 0.94662 0.90950 1.00644 0.99838 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.13 71.98 0.59 -1.83 16 2 C -0.06 -1.03 0.65 -52.18 -0.03 -1.06 16 3 C -0.13 -1.54 8.38 71.98 0.60 -0.94 16 4 C -0.14 -3.96 7.96 71.98 0.57 -3.39 16 5 C 0.11 2.01 2.95 44.37 0.13 2.14 16 6 H 0.17 1.69 8.14 -2.39 -0.02 1.67 16 7 N -0.71 -15.79 5.06 -459.62 -2.32 -18.11 16 8 C 0.70 23.28 8.24 179.44 1.48 24.76 16 9 O -0.57 -24.89 17.27 -3.80 -0.07 -24.95 16 10 N -0.57 -17.78 2.57 -773.12 -1.99 -19.77 16 11 C 0.13 3.90 6.10 86.38 0.53 4.42 16 12 C 0.03 1.28 6.28 71.98 0.45 1.74 16 13 O -0.39 -20.17 9.78 -148.98 -1.46 -21.63 16 14 C 0.20 11.73 5.00 71.23 0.36 12.09 16 15 C -0.62 -39.10 9.43 25.60 0.24 -38.86 16 16 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 17 C -0.03 -1.57 5.46 84.66 0.46 -1.10 16 18 N -0.93 -58.56 13.65 21.45 0.29 -58.27 16 19 Si 1.12 52.40 29.90 68.60 2.05 54.45 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.52 13.74 6.19 87.94 0.54 14.28 16 24 O -0.49 -14.04 15.63 -2.90 -0.05 -14.09 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.07 5.93 -2.39 -0.01 1.06 16 28 H 0.06 0.70 7.41 -2.39 -0.02 0.68 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.02 0.63 7.28 -2.38 -0.02 0.61 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.40 7.52 -2.39 -0.02 1.38 16 34 H 0.45 7.74 8.41 -92.71 -0.78 6.96 16 35 H 0.14 3.18 8.00 -2.39 -0.02 3.17 16 36 H 0.10 3.15 7.85 -2.39 -0.02 3.13 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 39 H -0.02 -1.45 8.01 -2.39 -0.02 -1.47 16 40 H -0.02 -0.95 8.01 -2.39 -0.02 -0.97 16 41 H 0.25 16.29 7.22 -92.70 -0.67 15.62 16 Total: -1.00 -82.53 338.54 2.74 -79.79 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.35 Total: 10.33 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.92 Total: 12.25 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -4.02 Total: -96.15 kcal Atomic # 8 Polarization: -59.10 SS G_CDS: -1.57 Total: -60.67 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.05 Total: 54.45 kcal Total: -82.53 2.74 -79.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566323391.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.713 kcal (2) G-P(sol) polarization free energy of solvation -82.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds