Wall clock time and date at job start Tue Mar 31 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48505 * 109.47309 * 270.00033 * 3 2 1 5 5 H 1.48500 * 109.46999 * 30.00141 * 3 2 1 6 6 H 1.48500 * 109.46968 * 150.00097 * 3 2 1 7 7 C 1.37877 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99825 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00086 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.45846 * 175.00465 * 10 9 7 12 12 C 1.53191 * 109.31369 * 181.38883 * 11 10 9 13 13 N 1.46925 * 108.77151 * 305.36293 * 12 11 10 14 14 C 1.34781 * 120.63187 * 233.58177 * 13 12 11 15 15 O 1.21586 * 119.99633 * 5.22734 * 14 13 12 16 16 N 1.34767 * 119.99998 * 185.22227 * 14 13 12 17 17 C 1.46501 * 119.99933 * 175.01697 * 16 14 13 18 18 C 1.53003 * 109.47544 * 180.02562 * 17 16 14 19 19 C 1.50692 * 109.47518 * 180.02562 * 18 17 16 20 20 O 1.20835 * 119.99725 * 0.02562 * 19 18 17 21 21 O 1.34229 * 120.00355 * 180.02562 * 19 18 17 22 22 C 1.46932 * 118.74086 * 53.86339 * 13 12 11 23 23 C 1.53037 * 109.45956 * 295.07064 * 10 9 7 24 24 H 0.96997 * 119.99681 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46557 * 60.00253 * 9 7 2 26 26 H 1.08995 * 109.47111 * 300.00196 * 9 7 2 27 27 H 1.08995 * 109.45804 * 55.03086 * 10 9 7 28 28 H 1.08996 * 109.49815 * 61.43257 * 11 10 9 29 29 H 1.09005 * 109.51942 * 301.35414 * 11 10 9 30 30 H 1.08995 * 109.58701 * 185.57874 * 12 11 10 31 31 H 1.08998 * 109.70598 * 65.21590 * 12 11 10 32 32 H 0.96998 * 120.00443 * 355.02040 * 16 14 13 33 33 H 1.09004 * 109.47286 * 60.00125 * 17 16 14 34 34 H 1.08999 * 109.47213 * 300.00318 * 17 16 14 35 35 H 1.08999 * 109.47031 * 300.00315 * 18 17 16 36 36 H 1.09004 * 109.46820 * 59.99725 * 18 17 16 37 37 H 0.96697 * 116.99909 * 180.02562 * 21 19 18 38 38 H 1.08997 * 109.58552 * 65.92294 * 22 13 12 39 39 H 1.09000 * 109.58974 * 186.35109 * 22 13 12 40 40 H 1.08996 * 109.49998 * 298.56821 * 23 10 9 41 41 H 1.09008 * 109.49692 * 58.63446 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5467 -2.6381 -0.1285 12 6 6.0507 -4.0843 -0.1643 13 7 5.5425 -4.7915 1.0191 14 6 6.3857 -5.4426 1.8447 15 8 7.5865 -5.3699 1.6681 16 7 5.8978 -6.1742 2.8660 17 6 6.8056 -6.9694 3.6966 18 6 6.0026 -7.6989 4.7755 19 6 6.9364 -8.5163 5.6303 20 8 8.1227 -8.5151 5.4005 21 8 6.4504 -9.2457 6.6469 22 6 4.0969 -4.7807 1.2819 23 6 3.6155 -3.3220 1.3044 24 1 -0.4849 0.8400 -0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.5869 -3.1747 -0.8446 28 1 5.9830 -2.1217 0.7265 29 1 5.8366 -2.1289 -1.0477 30 1 7.1406 -4.0917 -0.1543 31 1 5.6902 -4.5769 -1.0672 32 1 4.9457 -6.1744 3.0510 33 1 7.5357 -6.3120 4.1688 34 1 7.3230 -7.6989 3.0736 35 1 5.4848 -6.9696 5.3985 36 1 5.2727 -8.3563 4.3029 37 1 7.0882 -9.7533 7.1672 38 1 3.5783 -5.3275 0.4944 39 1 3.8973 -5.2478 2.2463 40 1 4.0700 -2.7992 2.1459 41 1 2.5303 -3.2993 1.4052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568261892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:48 Heat of formation + Delta-G solvation = -132.129001 kcal Electronic energy + Delta-G solvation = -22324.188070 eV Core-core repulsion = 18817.646743 eV Total energy + Delta-G solvation = -3506.541326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75945 -40.22962 -37.67081 -36.65530 -35.38107 -34.08658 -32.31859 -31.45471 -30.44825 -28.50708 -25.45545 -24.18958 -22.95576 -21.68239 -21.45608 -20.09201 -19.31432 -18.52993 -17.94909 -17.00775 -16.77246 -16.71222 -15.91217 -15.56375 -14.55344 -14.40607 -14.28425 -14.14699 -13.77223 -13.53914 -13.27917 -13.20365 -12.89181 -12.36739 -12.28660 -12.08142 -12.01552 -11.87291 -11.46882 -11.16644 -11.06729 -10.93092 -10.67302 -10.34519 -10.13273 -9.79918 -9.71883 -9.49824 -9.25386 -9.08552 -8.55847 -8.32629 -6.07111 -4.04492 1.75626 2.27369 2.93857 3.24324 3.29104 3.37140 3.41026 3.90103 4.17541 4.43385 4.52902 4.79240 4.99388 5.04215 5.24439 5.26845 5.40301 5.41496 5.47987 5.60584 5.61886 5.66230 5.91221 6.03000 6.04745 6.23972 6.29420 6.31371 6.40229 6.55808 6.77842 6.84446 6.93990 6.99470 7.23687 7.42847 7.43135 7.77429 7.93777 8.50591 8.61535 8.97171 9.56374 11.06060 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.003006 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.458196 B = 9311.631474 C = 9872.669822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.071 4.071 11 C -0.133 4.133 12 C 0.130 3.870 13 N -0.623 5.623 14 C 0.709 3.291 15 O -0.594 6.594 16 N -0.752 5.752 17 C 0.150 3.850 18 C -0.128 4.128 19 C 0.485 3.515 20 O -0.509 6.509 21 O -0.517 6.517 22 C 0.110 3.890 23 C -0.120 4.120 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.413 0.587 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.798 -16.634 9.369 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.090 4.090 11 C -0.171 4.171 12 C 0.007 3.993 13 N -0.359 5.359 14 C 0.410 3.590 15 O -0.473 6.473 16 N -0.411 5.411 17 C 0.025 3.975 18 C -0.166 4.166 19 C 0.327 3.673 20 O -0.397 6.397 21 O -0.329 6.329 22 C -0.013 4.013 23 C -0.158 4.158 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.234 0.766 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.272 0.728 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.582 -16.249 8.931 21.348 hybrid contribution 0.125 0.649 0.503 0.831 sum 10.706 -15.599 9.433 21.141 Atomic orbital electron populations 1.69909 1.06276 1.26845 1.51342 1.25027 0.94694 0.99138 0.94666 0.86814 0.80385 0.83787 0.78490 1.20369 1.21517 1.19052 1.21134 0.89423 0.94290 1.50522 0.90860 1.19623 0.97138 0.91704 0.96259 1.20987 0.92323 0.98962 0.96717 1.22079 0.97810 0.95055 1.02194 1.21531 1.00018 0.92154 0.85551 1.47355 1.06886 1.54590 1.27118 1.15739 0.85074 0.78683 0.79454 1.90905 1.13339 1.68069 1.74946 1.45156 1.10942 1.51332 1.33714 1.20833 0.91312 0.94472 0.90892 1.21471 0.98379 0.99723 0.97019 1.23081 0.88120 0.77329 0.78781 1.90792 1.17983 1.61963 1.68951 1.84516 1.46396 1.58754 1.43262 1.21898 0.79853 0.99297 1.00281 1.21984 1.02590 0.92463 0.98743 0.92796 0.96688 0.97008 0.91724 0.92051 0.91106 0.89487 0.91861 0.76581 0.90511 0.90670 0.86669 0.86740 0.72783 0.91274 0.91412 0.92314 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -13.82 8.94 -34.44 -0.31 -14.13 16 8 H 0.07 2.08 7.30 -52.48 -0.38 1.69 16 9 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 10 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 11 C -0.13 -2.08 5.36 -26.61 -0.14 -2.23 16 12 C 0.13 1.86 6.44 -3.71 -0.02 1.84 16 13 N -0.62 -8.72 2.97 -178.23 -0.53 -9.25 16 14 C 0.71 10.50 8.30 -86.92 -0.72 9.78 16 15 O -0.59 -11.05 15.77 5.29 0.08 -10.96 16 16 N -0.75 -7.98 5.46 -65.22 -0.36 -8.34 16 17 C 0.15 1.45 4.97 -4.04 -0.02 1.43 16 18 C -0.13 -0.75 5.93 -27.89 -0.17 -0.92 16 19 C 0.49 3.69 8.33 36.00 0.30 3.99 16 20 O -0.51 -5.81 16.74 -18.76 -0.31 -6.13 16 21 O -0.52 -2.75 13.42 -39.25 -0.53 -3.28 16 22 C 0.11 1.36 6.42 -3.48 -0.02 1.34 16 23 C -0.12 -1.92 5.21 -26.39 -0.14 -2.06 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.31 6.99 -51.93 -0.36 0.95 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.40 3.15 5.96 -40.82 -0.24 2.91 16 33 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.41 0.62 9.10 45.56 0.41 1.03 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.64 5.64 -51.93 -0.29 0.35 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.59 6.91 -51.92 -0.36 1.23 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -35.46 333.83 -7.52 -42.98 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.38 Total: 0.58 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.63 Total: -1.00 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.11 Total: -43.92 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.76 Total: -20.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.46 -7.52 -42.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568261892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.148 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds